File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0020/B23WHTKLT4/nfcore_rnafusion_100M__04da504a--20260527-151807/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0020_100M-04da504a
- Published
- May 27, 2026 7:02 PM
Content
View in new tab| sample_id | IS_CONTAMINATED | CONTAMINATION_PCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | Yes | 65.74 | 179.1 | 163.0 | 0.01 | 1.65 | 0.69 | 0.0 | 0.01 | 4.8 | 0.99 | 0.0 | 9999000000.0 | 376478085.0 | 197516332.0 | 0.004534 | 0.26692 | 144795271.0 | 0.951844 | 0.977258 | 0.041971 | 0.022742 | 137822516.0 | 69997047.0 | 6077223.0 | 1628909.0 | 309.996828 | 114.0 | 0.645432 | 0.518153 | 0.975572 | 0.0 | 316 | 911.3868800000001 | 0.268136 | 0.0 | 97.7562 | 91.30374691013941 | 96.5 | 95305015.0 | 19.334799999999998 | 0.974818 | 26719194926.0 | 197516332.0 | 0.548115 | 98.758166 | 36.7412195 | |||||||||
| NTC_0001_0001_B23WHTKLT4_1 | Skipped | N/A | 90.2 | 31.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.08 | 0.0 | 9999000000.0 | 48139.0 | 53950.0 | 0.57392 | 0.257683 | 40048.0 | 0.006417 | 0.030647 | 0.220435 | 0.969353 | 257.0 | 135.0 | 8828.0 | 4270.0 | 0.000296 | 0.0 | 0.0 | 0.0 | 0.894323 | 0.0 | 48 | 61.799453 | 0.604777 | 0.0941 | 21.7059 | 2.9582438643502336 | 9.97 | 2689.0 | 67.3407 | 0.891326 | 5110262.0 | 53950.0 | 0.664522 | 3.213321675239495 | 50.61240729313832 |
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