File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/eb06dae2d7f59334b8a0a1c597da99/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 309
  Pass (FILTER=PASS): 56 (18.1%)
  Fail (FILTER=FAIL): 253 (81.9%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 5
  All 5 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 36
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 36
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 29
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 24
  confidence_below_min(medium<high): 23
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 12
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 12
  total_reads_below_min(6.0<8.0): 7
  confidence_below_min(low<high): 7
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
  total_reads_below_min(3.0<8.0): 6
  total_reads_below_min(5.0<8.0): 6
  total_reads_below_min(7.0<8.0): 6
  total_reads_below_min(4.0<8.0): 6

Breakdown by confidence:
  high: 56 pass, 32 fail (total: 88)
  low: 0 pass, 79 fail (total: 79)
  medium: 0 pass, 142 fail (total: 142)
Arriba filter: 309 rows -> 56 PASS; wrote tih_rna_sample_00161_B23WHTKLT4_2.arriba.fusions.filtered.tsv and tih_rna_sample_00161_B23WHTKLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00161_B23WHTKLT4_2.arriba.fusions.filter_summary.txt