Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/60e38325dfdbd583ab4d49e8847b06/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/e91e45954716242b1c070b429fcf94/659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/60e38325dfdbd583ab4d49e8847b06/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
paired = 97398150
unpaired = 1540796
MERGED PAIRED END READS = 97398150
MATES PROCESSED = 196337096
TOTAL READS = 98938946
DISTINCT READS = 3.37301e+07
DISTINCT COUNTS = 408
MAX COUNT = 254324
COUNTS OF 1 = 1.18436e+07
MAX TERMS = 100
OBSERVED COUNTS (254325)
1 11843594
2 7550936
3 5077745
4 3320252
5 2114577
6 1329317
7 832955
8 527070
9 336625
10 221116
11 147679
12 101644
13 70522
14 51368
15 37532
16 28095
17 21610
18 16820
19 13368
20 10828
21 8758
22 7259
23 6197
24 5450
25 4536
26 3843
27 3389
28 3024
29 2703
30 2276
31 2118
32 1896
33 1640
34 1532
35 1338
36 1211
37 1175
38 1037
39 942
40 910
41 814
42 741
43 699
44 628
45 581
46 549
47 493
48 482
49 460
50 401
51 371
52 379
53 323
54 365
55 331
56 314
57 300
58 263
59 236
60 236
61 227
62 186
63 220
64 181
65 177
66 157
67 152
68 153
69 161
70 162
71 125
72 122
73 125
74 129
75 124
76 117
77 96
78 119
79 85
80 100
81 99
82 91
83 85
84 98
85 83
86 70
87 81
88 73
89 65
90 50
91 56
92 52
93 62
94 52
95 45
96 57
97 56
98 48
99 41
100 48
101 52
102 37
103 42
104 24
105 35
106 36
107 41
108 34
109 31
110 35
111 36
112 20
113 36
114 22
115 37
116 23
117 33
118 17
119 20
120 20
121 25
122 29
123 23
124 22
125 20
126 20
127 22
128 18
129 17
130 21
131 19
132 18
133 16
134 9
135 17
136 16
137 18
138 20
139 19
140 11
141 21
142 15
143 12
144 12
145 16
146 19
147 19
148 18
149 12
150 19
151 13
152 12
153 14
154 11
155 18
156 9
157 8
158 10
159 6
160 8
161 3
162 9
163 5
164 8
165 6
166 8
167 7
168 12
169 8
170 8
171 7
172 9
173 6
174 10
175 7
176 10
177 9
178 10
179 8
180 3
181 5
182 9
183 4
184 8
185 2
186 6
187 5
188 4
189 10
190 4
191 8
192 11
193 6
194 9
195 3
196 1
197 7
198 6
199 6
200 5
201 7
202 4
203 6
204 6
205 8
206 8
207 3
208 6
209 7
210 4
211 3
212 3
213 4
214 1
215 8
216 4
217 2
218 5
219 3
220 4
221 3
222 5
223 4
224 6
225 4
226 4
227 1
228 4
229 4
231 1
232 4
233 4
234 7
235 4
236 4
237 1
238 2
239 1
240 2
241 3
242 3
243 3
244 4
245 1
246 4
247 2
248 1
249 1
250 3
251 5
252 4
253 4
254 1
255 1
256 4
257 1
258 3
260 1
261 4
263 4
264 4
265 5
266 1
267 1
268 2
269 4
270 4
271 3
272 5
274 2
275 3
276 2
277 1
279 1
280 3
281 1
282 4
284 3
285 2
287 2
290 4
291 1
292 1
293 3
294 3
296 1
297 2
299 2
300 3
302 3
303 1
305 1
306 2
307 2
308 2
309 1
310 2
311 2
313 1
315 1
316 1
318 1
319 2
320 1
323 1
324 1
325 2
326 1
328 1
330 1
332 1
333 3
337 1
338 1
340 2
341 1
347 2
348 1
349 2
350 3
351 1
355 1
356 2
362 1
363 1
365 1
366 1
367 1
370 3
371 2
372 4
373 2
374 1
385 1
386 1
388 1
389 1
390 1
394 1
396 1
404 2
405 1
413 1
417 1
418 1
420 1
424 1
425 1
426 1
427 1
430 2
437 1
444 1
445 1
446 1
447 2
453 1
456 1
457 1
462 1
464 1
471 1
478 2
482 1
486 1
489 1
490 1
496 1
506 1
508 1
509 1
511 2
539 1
544 1
564 2
572 1
577 1
590 1
593 1
594 1
597 1
600 1
603 1
625 1
645 1
649 1
652 1
653 1
673 1
674 1
677 1
684 1
855 1
906 1
920 1
1037 1
1064 1
1075 1
1106 1
1179 1
1217 1
1298 1
1378 1
3036 1
3293 1
4145 1
14786 1
254324 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......._..._..._......_...._......................................._..._
........._...__..._........._...........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]