File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/a17115a39c0ac9be5b7b292a36a9e0/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-05-27T22:38:29Z thread 331 Sample sheet being processed by common lib? Yes
2026-05-27T22:38:29Z thread 331 SampleSheet Settings: 
2026-05-27T22:38:29Z thread 331   FastqCompressionFormat = gzip
2026-05-27T22:38:29Z thread 331   NoLaneSplitting = FALSE
2026-05-27T22:38:29Z thread 331   OverrideCycles = Y151;I10;I10;Y151
2026-05-27T22:38:29Z thread 331   SoftwareVersion = 4.3.6
2026-05-27T22:38:29Z thread 331 
2026-05-27T22:38:29Z thread 331 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-05-27T22:38:29Z thread 331 shared-thread-linux-native-asio output is disabled
2026-05-27T22:38:29Z thread 331 bcl-convert Version 4.4.6
2026-05-27T22:38:29Z thread 331 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-27T22:38:29Z thread 331 Command Line: --tiles s_5 --output-directory output --bcl-input-directory 20260515_LH00995_0042_B23WHTKLT4 --sample-sheet bclconvert_samplesheet.csv 
2026-05-27T22:38:29Z thread 331 Conversion Begins.
2026-05-27T22:38:29Z thread 331 Input BCL Information:
2026-05-27T22:38:29Z thread 331     Read Structure: 2026-05-27T22:38:29Z thread 331 Y1512026-05-27T22:38:29Z thread 331 ;2026-05-27T22:38:29Z thread 331 I102026-05-27T22:38:29Z thread 331 ;2026-05-27T22:38:29Z thread 331 I102026-05-27T22:38:29Z thread 331 ;2026-05-27T22:38:29Z thread 331 Y1512026-05-27T22:38:29Z thread 331 
2026-05-27T22:38:29Z thread 331     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-05-27T22:38:29Z thread 331     BCL file format: cbcl
2026-05-27T22:38:29Z thread 331     Positions file format: slocs
2026-05-27T22:38:29Z thread 331     Filter file format: filter
2026-05-27T22:38:29Z thread 331 Conversion Information:
2026-05-27T22:38:29Z thread 331     Tile filtering: converting 784/6272 tiles
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 1: 96
2026-05-27T22:38:29Z thread 331     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 2: 96
2026-05-27T22:38:29Z thread 331     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 3: 96
2026-05-27T22:38:29Z thread 331     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 4: 96
2026-05-27T22:38:29Z thread 331     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 5: 96
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 6: 96
2026-05-27T22:38:29Z thread 331     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 7: 96
2026-05-27T22:38:29Z thread 331     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Sample Count for Lane 8: 96
2026-05-27T22:38:29Z thread 331     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T22:38:29Z thread 331     Expected number of sample FASTQ files to be created: 192
2026-05-27T22:38:29Z thread 331 # CPU hw threads available: 64
2026-05-27T22:38:29Z thread 331 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-27T22:38:29Z thread 331 SW compressors: 64
2026-05-27T22:38:29Z thread 331 SW decompressors: 32
2026-05-27T22:38:29Z thread 331 SW FASTQ compression level: 1
2026-05-27T23:20:42Z thread 331 Lane 5 Post-run Information:
2026-05-27T23:20:42Z thread 331     Total clusters: 3845143934
2026-05-27T23:20:42Z thread 331     Total Genomic Reads: 7690287868
2026-05-27T23:20:42Z thread 331     Total Genomic Input Gigabases 1161.23
2026-05-27T23:20:42Z thread 331     Minimum reads for a sample: 205168
2026-05-27T23:20:42Z thread 331     Maximum reads for a sample: 154487292
2026-05-27T23:20:42Z thread 331     Average reads per sample: 74896089.65
2026-05-27T23:20:42Z thread 331     Undetermined reads: 500263262
2026-05-27T23:20:45Z thread 331 Conversion Complete.