Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/3b3775fc8a12b1ffba332ace8ef191/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/3b4cdee71b4ec14f723f3ba31cc84e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/3b4cdee71b4ec14f723f3ba31cc84e/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
paired = 97552358
unpaired = 1529951
MERGED PAIRED END READS = 97552358
MATES PROCESSED = 196634667
TOTAL READS = 99082309
DISTINCT READS = 4.69537e+07
DISTINCT COUNTS = 432
MAX COUNT = 288134
COUNTS OF 1 = 2.31243e+07
MAX TERMS = 100
OBSERVED COUNTS (288135)
1 23124288
2 11717537
3 5902579
4 2923811
5 1460811
6 750537
7 399803
8 224199
9 131747
10 81795
11 53735
12 36171
13 26245
14 19460
15 14896
16 11442
17 9339
18 7640
19 6313
20 5218
21 4453
22 3821
23 3249
24 2961
25 2513
26 2116
27 2007
28 1724
29 1590
30 1419
31 1334
32 1122
33 1099
34 932
35 889
36 788
37 731
38 662
39 648
40 619
41 527
42 471
43 475
44 441
45 425
46 420
47 343
48 347
49 303
50 298
51 272
52 239
53 266
54 245
55 210
56 223
57 199
58 193
59 178
60 178
61 172
62 153
63 163
64 172
65 140
66 125
67 122
68 127
69 126
70 129
71 94
72 91
73 85
74 84
75 80
76 68
77 77
78 69
79 74
80 73
81 72
82 60
83 51
84 75
85 64
86 61
87 49
88 66
89 51
90 46
91 50
92 53
93 50
94 42
95 35
96 41
97 39
98 39
99 40
100 28
101 41
102 38
103 36
104 34
105 29
106 44
107 26
108 36
109 31
110 28
111 32
112 25
113 24
114 19
115 13
116 24
117 30
118 23
119 26
120 23
121 24
122 21
123 25
124 23
125 24
126 12
127 22
128 14
129 13
130 18
131 14
132 17
133 19
134 15
135 15
136 15
137 14
138 12
139 19
140 17
141 16
142 9
143 17
144 9
145 9
146 16
147 10
148 10
149 11
150 20
151 13
152 17
153 16
154 17
155 15
156 13
157 10
158 14
159 6
160 9
161 9
162 15
163 9
164 10
165 9
166 6
167 11
168 9
169 8
170 6
171 8
172 6
173 8
174 6
175 5
176 9
177 7
178 14
179 5
180 6
181 7
182 5
183 10
184 8
185 6
186 5
187 6
188 3
189 3
190 4
191 5
192 6
193 4
194 6
195 6
196 5
197 7
198 7
199 8
200 7
201 7
202 1
203 8
204 2
205 4
206 3
208 5
209 9
210 9
211 5
212 6
213 9
214 2
215 3
216 3
217 1
218 6
219 10
220 5
221 5
222 5
223 4
224 5
225 1
226 4
227 5
229 1
230 2
231 1
232 7
233 2
234 3
235 1
236 2
237 2
238 1
239 1
240 6
241 5
242 5
243 2
244 3
245 2
246 5
247 1
248 1
249 3
250 1
251 1
252 1
253 3
254 1
256 2
257 1
258 1
260 2
261 2
263 3
264 5
265 3
266 1
268 2
269 3
270 4
271 3
272 1
273 3
274 1
275 1
276 1
277 2
278 1
279 1
280 1
281 4
282 2
283 1
285 3
286 3
287 3
288 1
289 2
290 1
291 1
292 3
293 1
295 2
296 3
297 1
298 2
299 1
300 5
301 1
302 2
303 1
305 2
306 2
307 2
308 1
309 2
310 2
311 2
312 1
314 2
315 2
318 1
320 3
321 2
322 2
325 2
326 1
327 1
329 2
333 1
334 2
336 1
337 1
338 1
339 2
340 1
341 3
343 1
346 1
347 1
348 1
349 1
351 2
352 1
353 1
354 1
355 2
356 1
357 1
358 1
359 2
360 2
362 1
363 1
366 1
367 1
368 1
371 1
372 1
373 1
374 2
378 1
380 1
381 1
385 1
386 1
391 2
392 1
394 1
398 1
399 2
400 1
401 1
409 1
419 1
426 1
430 1
431 1
435 1
438 1
439 2
452 2
454 1
456 1
460 1
463 1
464 2
466 1
473 1
477 1
486 1
487 2
488 1
489 1
492 1
501 1
515 1
522 1
523 1
524 1
534 1
536 1
538 1
539 1
540 1
544 1
546 1
550 2
552 2
572 1
575 1
583 2
584 1
586 1
593 2
597 1
598 1
601 1
612 1
626 2
640 1
644 1
652 1
664 1
668 1
710 1
723 1
726 1
727 1
734 1
750 1
762 1
792 1
834 1
865 1
867 1
922 1
1028 1
1035 1
1073 1
1142 2
1413 1
1657 1
4252 1
4386 1
4433 1
18172 1
288134 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._....................._...._...................................._...
..._.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]