Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c444f39fd2c07f29835777fb996303/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/64379ab7b68cc2bf11652d87733d60/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/ee641a61b5df82136ff613d0f204c7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/ee641a61b5df82136ff613d0f204c7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/15eb0b55a4708866b369d8b941ee81/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (5799243) splicing reads. 191341 splicing junctions. 158313 known splicing junctions. 33028 novel splicing junctions.
sampling 10% (11598487) splicing reads. 224328 splicing junctions. 170417 known splicing junctions. 53911 novel splicing junctions.
sampling 15% (17397731) splicing reads. 246591 splicing junctions. 176894 known splicing junctions. 69697 novel splicing junctions.
sampling 20% (23196974) splicing reads. 263374 splicing junctions. 181191 known splicing junctions. 82183 novel splicing junctions.
sampling 25% (28996218) splicing reads. 276516 splicing junctions. 184247 known splicing junctions. 92269 novel splicing junctions.
sampling 30% (34795462) splicing reads. 287303 splicing junctions. 186576 known splicing junctions. 100727 novel splicing junctions.
sampling 35% (40594705) splicing reads. 296250 splicing junctions. 188360 known splicing junctions. 107890 novel splicing junctions.
sampling 40% (46393949) splicing reads. 303763 splicing junctions. 189755 known splicing junctions. 114008 novel splicing junctions.
sampling 45% (52193193) splicing reads. 310191 splicing junctions. 190950 known splicing junctions. 119241 novel splicing junctions.
sampling 50% (57992437) splicing reads. 315602 splicing junctions. 191947 known splicing junctions. 123655 novel splicing junctions.
sampling 55% (63791680) splicing reads. 320521 splicing junctions. 192804 known splicing junctions. 127717 novel splicing junctions.
sampling 60% (69590924) splicing reads. 324767 splicing junctions. 193482 known splicing junctions. 131285 novel splicing junctions.
sampling 65% (75390168) splicing reads. 328397 splicing junctions. 194040 known splicing junctions. 134357 novel splicing junctions.
sampling 70% (81189411) splicing reads. 331538 splicing junctions. 194554 known splicing junctions. 136984 novel splicing junctions.
sampling 75% (86988655) splicing reads. 334203 splicing junctions. 194969 known splicing junctions. 139234 novel splicing junctions.
sampling 80% (92787899) splicing reads. 336559 splicing junctions. 195353 known splicing junctions. 141206 novel splicing junctions.
sampling 85% (98587142) splicing reads. 338476 splicing junctions. 195666 known splicing junctions. 142810 novel splicing junctions.
sampling 90% (104386386) splicing reads. 340113 splicing junctions. 195926 known splicing junctions. 144187 novel splicing junctions.
sampling 95% (110185630) splicing reads. 341424 splicing junctions. 196129 known splicing junctions. 145295 novel splicing junctions.
sampling 100% (115984874) splicing reads. 342463 splicing junctions. 196299 known splicing junctions. 146164 novel splicing junctions.
null device 
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