File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/9bf3c6b76cb1c764d71fae0b65a41a/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 4 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 161
  Pass (FILTER=PASS): 22 (13.7%)
  Fail (FILTER=FAIL): 139 (86.3%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 4
  All 4 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 28
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(low<high): 5
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
  total_reads_below_min(7.0<8.0): 3
  total_reads_below_min(3.0<8.0): 3
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 3

Breakdown by confidence:
  high: 22 pass, 10 fail (total: 32)
  low: 0 pass, 48 fail (total: 48)
  medium: 0 pass, 81 fail (total: 81)
Arriba filter: 161 rows -> 22 PASS; wrote 659_buD-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_buD-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_buD-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt