File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/d9c2e0d3fef01ac41697364231277d/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 357
  Pass (FILTER=PASS): 67 (18.8%)
  Fail (FILTER=FAIL): 290 (81.2%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 49
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 39
  confidence_below_min(medium<high): 32
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 27
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 24
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 12
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 12
  total_reads_below_min(5.0<8.0): 9
  confidence_below_min(low<high): 9
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 7
  total_reads_below_min(3.0<8.0): 7
  total_reads_below_min(7.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6

Breakdown by confidence:
  high: 67 pass, 27 fail (total: 94)
  low: 0 pass, 142 fail (total: 142)
  medium: 0 pass, 121 fail (total: 121)
Arriba filter: 357 rows -> 67 PASS; wrote tih_rna_sample_00479_B23WHTKLT4_2.arriba.fusions.filtered.tsv and tih_rna_sample_00479_B23WHTKLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00479_B23WHTKLT4_2.arriba.fusions.filter_summary.txt