Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/36521c120b93d12c2a3d59264593d9/659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/64379ab7b68cc2bf11652d87733d60/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/2b66cbabbee89b82b79e505667ede7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/d16295d5d4748f4ea848cbebbe37a0/659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/2b66cbabbee89b82b79e505667ede7/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (5556002) splicing reads. 190136 splicing junctions. 159018 known splicing junctions. 31118 novel splicing junctions.
sampling 10% (11112004) splicing reads. 218969 splicing junctions. 169916 known splicing junctions. 49053 novel splicing junctions.
sampling 15% (16668006) splicing reads. 237082 splicing junctions. 175254 known splicing junctions. 61828 novel splicing junctions.
sampling 20% (22224008) splicing reads. 249703 splicing junctions. 178591 known splicing junctions. 71112 novel splicing junctions.
sampling 25% (27780010) splicing reads. 258925 splicing junctions. 180872 known splicing junctions. 78053 novel splicing junctions.
sampling 30% (33336012) splicing reads. 266105 splicing junctions. 182572 known splicing junctions. 83533 novel splicing junctions.
sampling 35% (38892015) splicing reads. 271921 splicing junctions. 183819 known splicing junctions. 88102 novel splicing junctions.
sampling 40% (44448017) splicing reads. 276516 splicing junctions. 184784 known splicing junctions. 91732 novel splicing junctions.
sampling 45% (50004019) splicing reads. 280456 splicing junctions. 185567 known splicing junctions. 94889 novel splicing junctions.
sampling 50% (55560021) splicing reads. 283514 splicing junctions. 186185 known splicing junctions. 97329 novel splicing junctions.
sampling 55% (61116023) splicing reads. 286150 splicing junctions. 186720 known splicing junctions. 99430 novel splicing junctions.
sampling 60% (66672025) splicing reads. 288338 splicing junctions. 187137 known splicing junctions. 101201 novel splicing junctions.
sampling 65% (72228027) splicing reads. 290229 splicing junctions. 187472 known splicing junctions. 102757 novel splicing junctions.
sampling 70% (77784030) splicing reads. 291774 splicing junctions. 187753 known splicing junctions. 104021 novel splicing junctions.
sampling 75% (83340032) splicing reads. 293053 splicing junctions. 188000 known splicing junctions. 105053 novel splicing junctions.
sampling 80% (88896034) splicing reads. 294066 splicing junctions. 188163 known splicing junctions. 105903 novel splicing junctions.
sampling 85% (94452036) splicing reads. 294917 splicing junctions. 188323 known splicing junctions. 106594 novel splicing junctions.
sampling 90% (100008038) splicing reads. 295547 splicing junctions. 188423 known splicing junctions. 107124 novel splicing junctions.
sampling 95% (105564040) splicing reads. 296008 splicing junctions. 188518 known splicing junctions. 107490 novel splicing junctions.
sampling 100% (111120043) splicing reads. 296282 splicing junctions. 188572 known splicing junctions. 107710 novel splicing junctions.
null device 
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