Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/b373f1759155471fd5151c70431c72/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/64379ab7b68cc2bf11652d87733d60/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/31474e03b94e721871be90bab47923/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/31474e03b94e721871be90bab47923/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/0edd20402bf857483355320fdf3b05/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (5860063) splicing reads. 201783 splicing junctions. 165033 known splicing junctions. 36750 novel splicing junctions.
sampling 10% (11720127) splicing reads. 238432 splicing junctions. 177710 known splicing junctions. 60722 novel splicing junctions.
sampling 15% (17580191) splicing reads. 263207 splicing junctions. 184352 known splicing junctions. 78855 novel splicing junctions.
sampling 20% (23440254) splicing reads. 282211 splicing junctions. 188897 known splicing junctions. 93314 novel splicing junctions.
sampling 25% (29300318) splicing reads. 297301 splicing junctions. 192090 known splicing junctions. 105211 novel splicing junctions.
sampling 30% (35160382) splicing reads. 309799 splicing junctions. 194546 known splicing junctions. 115253 novel splicing junctions.
sampling 35% (41020445) splicing reads. 320324 splicing junctions. 196449 known splicing junctions. 123875 novel splicing junctions.
sampling 40% (46880509) splicing reads. 329078 splicing junctions. 197962 known splicing junctions. 131116 novel splicing junctions.
sampling 45% (52740573) splicing reads. 336500 splicing junctions. 199190 known splicing junctions. 137310 novel splicing junctions.
sampling 50% (58600637) splicing reads. 343010 splicing junctions. 200279 known splicing junctions. 142731 novel splicing junctions.
sampling 55% (64460700) splicing reads. 348900 splicing junctions. 201144 known splicing junctions. 147756 novel splicing junctions.
sampling 60% (70320764) splicing reads. 353790 splicing junctions. 201882 known splicing junctions. 151908 novel splicing junctions.
sampling 65% (76180828) splicing reads. 358085 splicing junctions. 202557 known splicing junctions. 155528 novel splicing junctions.
sampling 70% (82040891) splicing reads. 361879 splicing junctions. 203099 known splicing junctions. 158780 novel splicing junctions.
sampling 75% (87900955) splicing reads. 365085 splicing junctions. 203585 known splicing junctions. 161500 novel splicing junctions.
sampling 80% (93761019) splicing reads. 367906 splicing junctions. 203988 known splicing junctions. 163918 novel splicing junctions.
sampling 85% (99621082) splicing reads. 370119 splicing junctions. 204299 known splicing junctions. 165820 novel splicing junctions.
sampling 90% (105481146) splicing reads. 371943 splicing junctions. 204557 known splicing junctions. 167386 novel splicing junctions.
sampling 95% (111341210) splicing reads. 373398 splicing junctions. 204766 known splicing junctions. 168632 novel splicing junctions.
sampling 100% (117201274) splicing reads. 374610 splicing junctions. 204933 known splicing junctions. 169677 novel splicing junctions.
null device 
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