Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/e91e45954716242b1c070b429fcf94/659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/64379ab7b68cc2bf11652d87733d60/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/99fca57c988a8556c825cec7cf7d2a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/226b73e72c865dbbc9d24e127018f0/659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/99fca57c988a8556c825cec7cf7d2a/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (5225838) splicing reads. 195110 splicing junctions. 160067 known splicing junctions. 35043 novel splicing junctions.
sampling 10% (10451677) splicing reads. 227448 splicing junctions. 171801 known splicing junctions. 55647 novel splicing junctions.
sampling 15% (15677516) splicing reads. 248016 splicing junctions. 177913 known splicing junctions. 70103 novel splicing junctions.
sampling 20% (20903355) splicing reads. 262583 splicing junctions. 181634 known splicing junctions. 80949 novel splicing junctions.
sampling 25% (26129194) splicing reads. 273843 splicing junctions. 184253 known splicing junctions. 89590 novel splicing junctions.
sampling 30% (31355033) splicing reads. 282552 splicing junctions. 186079 known splicing junctions. 96473 novel splicing junctions.
sampling 35% (36580871) splicing reads. 289485 splicing junctions. 187520 known splicing junctions. 101965 novel splicing junctions.
sampling 40% (41806710) splicing reads. 295227 splicing junctions. 188680 known splicing junctions. 106547 novel splicing junctions.
sampling 45% (47032549) splicing reads. 299987 splicing junctions. 189580 known splicing junctions. 110407 novel splicing junctions.
sampling 50% (52258388) splicing reads. 303965 splicing junctions. 190314 known splicing junctions. 113651 novel splicing junctions.
sampling 55% (57484227) splicing reads. 307348 splicing junctions. 190966 known splicing junctions. 116382 novel splicing junctions.
sampling 60% (62710066) splicing reads. 310179 splicing junctions. 191440 known splicing junctions. 118739 novel splicing junctions.
sampling 65% (67935905) splicing reads. 312613 splicing junctions. 191835 known splicing junctions. 120778 novel splicing junctions.
sampling 70% (73161743) splicing reads. 314582 splicing junctions. 192154 known splicing junctions. 122428 novel splicing junctions.
sampling 75% (78387582) splicing reads. 316224 splicing junctions. 192416 known splicing junctions. 123808 novel splicing junctions.
sampling 80% (83613421) splicing reads. 317604 splicing junctions. 192660 known splicing junctions. 124944 novel splicing junctions.
sampling 85% (88839260) splicing reads. 318787 splicing junctions. 192873 known splicing junctions. 125914 novel splicing junctions.
sampling 90% (94065099) splicing reads. 319699 splicing junctions. 193010 known splicing junctions. 126689 novel splicing junctions.
sampling 95% (99290938) splicing reads. 320457 splicing junctions. 193117 known splicing junctions. 127340 novel splicing junctions.
sampling 100% (104516777) splicing reads. 320919 splicing junctions. 193209 known splicing junctions. 127710 novel splicing junctions.
null device 
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