Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/348b0aaa8fb73b397853c382a3513e/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/5d837737931492769825d78b337a8d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/5d837737931492769825d78b337a8d/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
paired = 97434167
unpaired = 1470838
MERGED PAIRED END READS = 97434167
MATES PROCESSED = 196339172
TOTAL READS = 98905005
DISTINCT READS = 3.46563e+07
DISTINCT COUNTS = 569
MAX COUNT = 252411
COUNTS OF 1 = 1.23693e+07
MAX TERMS = 100
OBSERVED COUNTS (252412)
1 12369277
2 8066755
3 5337154
4 3369928
5 2061098
6 1244004
7 752936
8 460917
9 290492
10 187489
11 123917
12 84498
13 59829
14 42930
15 32474
16 24625
17 19090
18 15302
19 12582
20 10369
21 8828
22 7438
23 6506
24 5557
25 4710
26 4202
27 3794
28 3348
29 2952
30 2732
31 2435
32 2227
33 2057
34 1825
35 1659
36 1565
37 1454
38 1350
39 1168
40 1238
41 1071
42 969
43 931
44 877
45 809
46 737
47 700
48 698
49 660
50 615
51 570
52 517
53 496
54 473
55 435
56 454
57 417
58 380
59 347
60 317
61 344
62 346
63 335
64 289
65 275
66 269
67 247
68 260
69 255
70 211
71 219
72 195
73 200
74 200
75 193
76 176
77 192
78 169
79 168
80 140
81 139
82 137
83 144
84 147
85 141
86 136
87 111
88 114
89 122
90 109
91 101
92 89
93 105
94 97
95 105
96 89
97 115
98 70
99 72
100 79
101 93
102 82
103 80
104 83
105 55
106 60
107 54
108 62
109 51
110 65
111 54
112 49
113 61
114 63
115 71
116 48
117 58
118 59
119 49
120 49
121 50
122 53
123 37
124 47
125 47
126 42
127 43
128 33
129 38
130 45
131 36
132 42
133 40
134 42
135 37
136 46
137 30
138 39
139 28
140 47
141 32
142 29
143 32
144 33
145 19
146 32
147 23
148 27
149 28
150 27
151 19
152 21
153 25
154 16
155 30
156 25
157 18
158 31
159 14
160 23
161 23
162 23
163 20
164 29
165 16
166 21
167 16
168 21
169 21
170 23
171 17
172 15
173 23
174 14
175 14
176 16
177 10
178 13
179 15
180 13
181 8
182 14
183 23
184 14
185 14
186 17
187 14
188 15
189 14
190 13
191 17
192 15
193 13
194 11
195 3
196 9
197 11
198 7
199 15
200 14
201 6
202 6
203 11
204 11
205 12
206 8
207 10
208 13
209 11
210 8
211 9
212 8
213 4
214 12
215 9
216 10
217 12
218 10
219 7
220 14
221 7
222 6
223 8
224 4
225 10
226 5
227 9
228 4
229 9
230 6
231 5
232 5
233 7
234 6
235 7
236 9
237 7
238 5
239 7
240 3
241 5
242 5
243 9
244 9
245 5
246 5
247 6
248 4
249 6
250 4
251 6
252 5
253 4
254 5
255 4
256 5
257 1
258 10
259 4
260 6
261 1
262 10
263 9
264 5
265 5
266 4
267 4
268 4
269 1
270 8
271 6
272 2
273 3
274 7
275 5
276 4
277 6
278 3
279 4
280 4
281 6
282 3
283 7
284 7
285 2
286 3
287 5
288 3
289 6
290 4
291 4
292 1
293 6
294 2
295 4
296 2
297 3
298 1
299 1
300 5
301 3
302 4
303 3
304 5
305 2
307 1
308 3
309 7
310 1
311 4
312 4
313 2
314 3
315 1
316 1
317 3
318 2
319 2
320 3
321 2
322 3
323 4
324 2
325 2
326 1
329 1
330 1
332 2
333 1
334 4
335 2
336 1
338 2
339 4
340 5
342 4
343 1
344 3
346 2
347 1
348 2
349 5
350 1
351 2
352 2
353 3
354 1
355 1
356 2
357 1
361 1
362 1
363 2
364 3
365 4
366 2
367 1
368 4
369 2
370 3
371 1
372 4
374 1
375 4
376 2
378 3
379 3
381 2
382 3
383 1
384 2
385 1
388 1
390 1
391 1
394 2
396 3
398 2
400 1
401 1
402 1
403 2
404 1
405 2
407 1
410 1
411 1
412 1
413 1
414 1
415 1
417 1
418 1
419 1
422 4
423 1
424 1
425 2
426 2
428 1
429 1
430 1
432 2
433 2
435 3
436 2
437 3
438 1
439 1
442 1
443 1
444 1
445 2
446 1
447 4
448 2
451 1
452 2
454 1
457 3
459 1
461 1
462 1
463 1
466 2
467 1
469 2
470 1
472 1
473 1
477 2
478 1
481 2
482 1
483 1
485 1
490 1
491 1
493 1
494 1
495 1
496 1
497 1
500 1
501 2
504 1
505 2
506 3
507 2
512 1
513 1
517 2
518 1
521 1
523 2
528 1
530 2
531 2
533 1
535 1
536 1
538 1
540 1
542 1
543 1
546 1
549 1
550 1
553 2
554 2
556 1
557 1
558 1
560 1
564 1
565 1
566 1
568 1
572 1
577 1
580 1
586 1
588 1
590 2
594 1
597 2
599 2
600 2
609 1
610 2
619 1
622 1
623 1
629 1
640 2
643 1
644 1
648 1
649 1
654 2
656 1
658 1
670 1
680 1
688 2
692 1
694 1
695 1
711 3
716 1
733 1
739 1
742 2
770 1
779 1
782 1
786 1
796 1
797 1
799 1
801 1
802 1
809 1
811 1
813 1
815 1
831 1
838 1
844 1
867 1
873 1
881 1
909 1
914 1
916 1
926 1
945 1
947 1
973 1
992 1
1025 1
1037 1
1040 1
1085 1
1108 1
1115 1
1142 1
1227 1
1239 1
1242 1
1243 1
1325 1
1364 1
1372 1
1449 1
1459 1
1481 1
1567 1
1674 1
2012 1
2014 1
2366 1
3049 1
3109 1
3561 1
3732 1
4556 1
13846 1
252411 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._..__.._........._.._........._....._..__....._........._....._.......
.._....__....__....___.......__._............_.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]