#id: 'kallisto_qc_metrics' #plot_type: 'generalstats' #pconfig: # fragment_length_mean: # namespace: 'Kallisto' # title: 'Fragment Length Mean' # description: 'Mean fragment length from kallisto fragment length distribution' # format: '{:,.1f}' # min: 0 # suffix: ' bp' # fragment_length_median: # namespace: 'Kallisto' # title: 'Fragment Length Median' # description: 'Median fragment length from kallisto fragment length distribution' # format: '{:,.1f}' # min: 0 # suffix: ' bp' # pct_mito_est_counts: # namespace: 'Expression QC' # title: 'pct Mito est. counts' # description: 'Percentage of estimated counts from mitochondrial genes; high values can indicate cell damage or stress.' # format: '{:,.2f}' # suffix: '%' # pct_ribo_est_counts: # namespace: 'Expression QC' # title: 'pct Ribo est. counts' # description: 'Percentage of estimated counts from ribosomal genes; useful for assessing RNA quality and technical variation.' # format: '{:,.2f}' # suffix: '%' # pct_hk_est_counts: # namespace: 'Expression QC' # title: 'pct Housekeeping est. counts' # description: 'Percentage of estimated counts from housekeeping genes.' # format: '{:,.2f}' # suffix: '%' # pct_male_est_counts: # namespace: 'Expression QC' # title: 'pct Male est. counts' # format: '{:,.2f}' # suffix: '%' # pct_mito_tpm: # namespace: 'Expression QC' # title: 'pct Mito TPM' # description: 'Percentage of TPM from mitochondrial genes; high values can indicate cell damage or stress.' # format: '{:,.2f}' # suffix: '%' # pct_ribo_tpm: # namespace: 'Expression QC' # title: 'pct Ribo TPM' # description: 'Percentage of TPM from ribosomal genes; useful for assessing RNA quality and technical variation.' # format: '{:,.2f}' # suffix: '%' # pct_hk_tpm: # namespace: 'Expression QC' # title: 'pct Housekeeping TPM' # description: 'Percentage of TPM from housekeeping genes.' # format: '{:,.2f}' # suffix: '%' # pct_male_tpm: # namespace: 'Expression QC' # title: 'pct Male TPM' # format: '{:,.2f}' # suffix: '%' # score_log2tpm1_mean_chry_signature: # namespace: 'Expression QC' # title: 'ChrY Signature Score' # description: 'Mean log2(TPM+1) score for chrY signature genes; used for sex verification.' # format: '{:,.2f}' Sample fragment_length_mean fragment_length_median pct_mito_est_counts pct_ribo_est_counts pct_hk_est_counts pct_male_est_counts pct_mito_tpm pct_ribo_tpm pct_hk_tpm pct_male_tpm score_log2tpm1_mean_chry_signature 'NTC_0001_0001_A23YTGFLT4_1' 39.4 31.0 0.0 0.0 0.213 0.0 0.0 0.0 0.476 0.0 0.0