FastQCFastQC Report
Mon 8 Jun 2026
aih-tih-sc-24ecfe-R1_A23YTGFLT4_1_1.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenameaih-tih-sc-24ecfe-R1_A23YTGFLT4_1_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34070927
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC57

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTCATCCAATCTGGG3713721.0899967588202104TruSeq Adapter, Index 11 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTCATCCAATCTAGG609620.17892674302639314TruSeq Adapter, Index 11 (97% over 37bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)