FastQCFastQC Report
Mon 8 Jun 2026
aih-tih-sc-d5fda9-R1_A23YTGFLT4_1_1.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenameaih-tih-sc-d5fda9-R1_A23YTGFLT4_1_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29323962
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTGACATCTATCTGGT1149830.39211277111871856TruSeq Adapter, Index 25 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTGACATCTATCTAGT590590.20140184331162345TruSeq Adapter, Index 25 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)