Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/650ee357c0c752a1103c0fab78a190/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/650ee357c0c752a1103c0fab78a190/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/b65c33eebcd6fc14532208b47d1793/aih-tih-sc-64fc89-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/eabca3128082cb4101d7da39ec6272/aih-tih-sc-64fc89-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
MLX--ATP6V0A1
starfusion
arriba
LATS2--PAN3
starfusion
arriba
PDE3B--SPON1
starfusion
arriba
PAN3--DCUN1D2
starfusion
arriba
AKT1--CEP170B
starfusion
arriba
AKT1--BRF1
starfusion
DZIP1--DLEU1
starfusion
arriba
CSNK1G2--BTBD2
starfusion
arriba
BAIAP2--SLC38A10
starfusion
arriba
DCUN1D2--DZIP1
starfusion
arriba
BSG--DAZAP1
starfusion
TLK2P1--AC110079.1
starfusion
arriba
AKT1--PACS2
starfusion
TLK2--AL669831.1
starfusion
CD81--OSBPL5
starfusion
MYO10--MARCHF11
starfusion
BAHCC1--BAIAP2
starfusion
PLEKHA4--TULP2
starfusion
arriba
TTYH3--MAD1L1
starfusion
C19orf25--SBNO2
starfusion
BAIAP2--BAHCC1
starfusion
MPHOSPH8--AL157944.1
starfusion
arriba
MAD1L1--TTYH3
starfusion
SLC19A1--FAM207A
starfusion
arriba
SLC19A1--COL18A1
starfusion
MAD1L1--ELFN1
starfusion
CSNK1G2--DAZAP1
starfusion
BSG--SBNO2
starfusion
BAHCC1--ASPSCR1
starfusion
ATP11A--RSBN1
starfusion
arriba
TBC1D22A--TAFA5
starfusion
RALGDS--BRD3
starfusion
arriba
STK32C--PWWP2B
starfusion
C19orf25--REXO1
starfusion
CRTC1--CERS1
starfusion
TTYH3--ELFN1
starfusion
TTYH3--C7orf50
starfusion
TAFA5--TBC1D22A
starfusion
SLC27A1--BTBD2
starfusion
AL359915.1--KPNA3
starfusion
ZDHHC8--RTN4R
starfusion
TESK2--SYCP1
starfusion
TBC1D16--BAIAP2
starfusion
PWWP2B--INPP5A
starfusion
NDUFA10--HDAC4
starfusion
MRPL23--CD81
starfusion
GNG7--GNA11
starfusion
GNG7--BTBD2
starfusion
DLGAP3--TMTC4
starfusion
arriba
DAZAP1--SBNO2
starfusion
CTBP1--MAEA
starfusion
COL18A1--FAM207BP
starfusion
BSG--CSNK1G2
starfusion
ANKMY1--HDAC4
starfusion
arriba
FAM53A--CTBP1
starfusion
IVNS1ABP--SWT1
arriba
BAIAP2--BAIAP2
arriba
BRF1--BRF1
arriba
STX16--NPEPL1
arriba
MYO10--AC092335.1
arriba
GTF2F2--AL354994.1
arriba
ACOT7--ACOT7
arriba
TCERG1L--TCERG1L
arriba
KPNA3--LGMNP1
arriba
KPNA3--STARP1
arriba
TVP23C--CDRT4
arriba
RSBN1--KL
arriba
RSBN1--STARD13
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
IGFL1P2--HIF3A
arriba
DCUN1D2--RAC1P8
arriba
DCUN1D2--AL353765.1
arriba
AC092807.3--DDAH1
arriba
UBAC2--LINC00358
arriba
UBAC2--LINC01075
arriba
KLRC4--KLRK1
arriba
RANBP10--PLA2G15
arriba
RSBN1--FAR1P1
arriba
RSBN1--KRT18P27
arriba

  0%|          | 0/81 [00:00<?, ?it/s]
Processing MLX--ATP6V0A1:   0%|          | 0/81 [00:00<?, ?it/s]
Processing MLX--ATP6V0A1:   1%|          | 1/81 [00:00<00:08,  9.25it/s]
Processing LATS2--PAN3:   1%|          | 1/81 [00:00<00:08,  9.25it/s]  
Processing LATS2--PAN3:   2%|▏         | 2/81 [00:00<00:08,  9.45it/s]
Processing PDE3B--SPON1:   2%|▏         | 2/81 [00:00<00:08,  9.45it/s]
Processing PDE3B--SPON1:   4%|▎         | 3/81 [00:00<00:08,  9.53it/s]
Processing PAN3--DCUN1D2:   4%|▎         | 3/81 [00:00<00:08,  9.53it/s]
Processing PAN3--DCUN1D2:   5%|▍         | 4/81 [00:00<00:08,  9.57it/s]
Processing AKT1--CEP170B:   5%|▍         | 4/81 [00:00<00:08,  9.57it/s]
Processing AKT1--CEP170B:   6%|▌         | 5/81 [00:00<00:07,  9.59it/s]
Processing AKT1--BRF1:   6%|▌         | 5/81 [00:00<00:07,  9.59it/s]   
Processing AKT1--BRF1:   7%|▋         | 6/81 [00:00<00:07,  9.61it/s]
Processing DZIP1--DLEU1:   7%|▋         | 6/81 [00:00<00:07,  9.61it/s]
Processing DZIP1--DLEU1:   9%|▊         | 7/81 [00:00<00:07,  9.62it/s]
Processing CSNK1G2--BTBD2:   9%|▊         | 7/81 [00:00<00:07,  9.62it/s]
Processing CSNK1G2--BTBD2:  10%|▉         | 8/81 [00:00<00:07,  9.63it/s]
Processing BAIAP2--SLC38A10:  10%|▉         | 8/81 [00:00<00:07,  9.63it/s]
Processing BAIAP2--SLC38A10:  11%|█         | 9/81 [00:00<00:07,  9.63it/s]
Processing DCUN1D2--DZIP1:  11%|█         | 9/81 [00:00<00:07,  9.63it/s]  
Processing DCUN1D2--DZIP1:  12%|█▏        | 10/81 [00:01<00:07,  9.63it/s]
Processing BSG--DAZAP1:  12%|█▏        | 10/81 [00:01<00:07,  9.63it/s]   
Processing BSG--DAZAP1:  14%|█▎        | 11/81 [00:01<00:07,  9.64it/s]
Processing TLK2P1--AC110079.1:  14%|█▎        | 11/81 [00:01<00:07,  9.64it/s]
Processing TLK2P1--AC110079.1:  15%|█▍        | 12/81 [00:01<00:07,  9.64it/s]
Processing AKT1--PACS2:  15%|█▍        | 12/81 [00:01<00:07,  9.64it/s]       
Processing AKT1--PACS2:  16%|█▌        | 13/81 [00:01<00:07,  9.64it/s]
Processing TLK2--AL669831.1:  16%|█▌        | 13/81 [00:01<00:07,  9.64it/s]
Processing TLK2--AL669831.1:  17%|█▋        | 14/81 [00:01<00:06,  9.65it/s]
Processing CD81--OSBPL5:  17%|█▋        | 14/81 [00:01<00:06,  9.65it/s]    
Processing CD81--OSBPL5:  19%|█▊        | 15/81 [00:01<00:06,  9.64it/s]
Processing MYO10--MARCHF11:  19%|█▊        | 15/81 [00:01<00:06,  9.64it/s]
Processing MYO10--MARCHF11:  20%|█▉        | 16/81 [00:01<00:06,  9.64it/s]
Processing BAHCC1--BAIAP2:  20%|█▉        | 16/81 [00:01<00:06,  9.64it/s] 
Processing BAHCC1--BAIAP2:  21%|██        | 17/81 [00:01<00:06,  9.65it/s]
Processing PLEKHA4--TULP2:  21%|██        | 17/81 [00:01<00:06,  9.65it/s]
Processing PLEKHA4--TULP2:  22%|██▏       | 18/81 [00:01<00:06,  9.64it/s]
Processing TTYH3--MAD1L1:  22%|██▏       | 18/81 [00:01<00:06,  9.64it/s] 
Processing TTYH3--MAD1L1:  23%|██▎       | 19/81 [00:01<00:06,  9.65it/s]
Processing C19orf25--SBNO2:  23%|██▎       | 19/81 [00:01<00:06,  9.65it/s]
Processing C19orf25--SBNO2:  25%|██▍       | 20/81 [00:02<00:06,  9.64it/s]
Processing BAIAP2--BAHCC1:  25%|██▍       | 20/81 [00:02<00:06,  9.64it/s] 
Processing BAIAP2--BAHCC1:  26%|██▌       | 21/81 [00:02<00:06,  9.64it/s]
Processing MPHOSPH8--AL157944.1:  26%|██▌       | 21/81 [00:02<00:06,  9.64it/s]
Processing MPHOSPH8--AL157944.1:  27%|██▋       | 22/81 [00:02<00:06,  9.64it/s]
Processing MAD1L1--TTYH3:  27%|██▋       | 22/81 [00:02<00:06,  9.64it/s]       
Processing MAD1L1--TTYH3:  28%|██▊       | 23/81 [00:02<00:06,  9.64it/s]
Processing SLC19A1--FAM207A:  28%|██▊       | 23/81 [00:02<00:06,  9.64it/s]
Processing SLC19A1--FAM207A:  30%|██▉       | 24/81 [00:02<00:05,  9.64it/s]
Processing SLC19A1--COL18A1:  30%|██▉       | 24/81 [00:02<00:05,  9.64it/s]
Processing SLC19A1--COL18A1:  31%|███       | 25/81 [00:02<00:05,  9.65it/s]
Processing MAD1L1--ELFN1:  31%|███       | 25/81 [00:02<00:05,  9.65it/s]   
Processing MAD1L1--ELFN1:  32%|███▏      | 26/81 [00:02<00:05,  9.64it/s]
Processing CSNK1G2--DAZAP1:  32%|███▏      | 26/81 [00:02<00:05,  9.64it/s]
Processing CSNK1G2--DAZAP1:  33%|███▎      | 27/81 [00:02<00:05,  9.65it/s]
Processing BSG--SBNO2:  33%|███▎      | 27/81 [00:02<00:05,  9.65it/s]     
Processing BSG--SBNO2:  35%|███▍      | 28/81 [00:02<00:05,  9.65it/s]
Processing BAHCC1--ASPSCR1:  35%|███▍      | 28/81 [00:02<00:05,  9.65it/s]
Processing BAHCC1--ASPSCR1:  36%|███▌      | 29/81 [00:03<00:05,  9.65it/s]
Processing ATP11A--RSBN1:  36%|███▌      | 29/81 [00:03<00:05,  9.65it/s]  
Processing ATP11A--RSBN1:  37%|███▋      | 30/81 [00:03<00:05,  9.64it/s]
Processing TBC1D22A--TAFA5:  37%|███▋      | 30/81 [00:03<00:05,  9.64it/s]
Processing TBC1D22A--TAFA5:  38%|███▊      | 31/81 [00:03<00:05,  9.64it/s]
Processing RALGDS--BRD3:  38%|███▊      | 31/81 [00:03<00:05,  9.64it/s]   
Processing RALGDS--BRD3:  40%|███▉      | 32/81 [00:03<00:05,  9.65it/s]
Processing STK32C--PWWP2B:  40%|███▉      | 32/81 [00:03<00:05,  9.65it/s]
Processing STK32C--PWWP2B:  41%|████      | 33/81 [00:03<00:04,  9.65it/s]
Processing C19orf25--REXO1:  41%|████      | 33/81 [00:03<00:04,  9.65it/s]
Processing C19orf25--REXO1:  42%|████▏     | 34/81 [00:03<00:04,  9.64it/s]
Processing CRTC1--CERS1:  42%|████▏     | 34/81 [00:03<00:04,  9.64it/s]   
Processing CRTC1--CERS1:  43%|████▎     | 35/81 [00:03<00:04,  9.65it/s]
Processing TTYH3--ELFN1:  43%|████▎     | 35/81 [00:03<00:04,  9.65it/s]
Processing TTYH3--ELFN1:  44%|████▍     | 36/81 [00:03<00:04,  9.65it/s]
Processing TTYH3--C7orf50:  44%|████▍     | 36/81 [00:03<00:04,  9.65it/s]
Processing TTYH3--C7orf50:  46%|████▌     | 37/81 [00:03<00:04,  9.65it/s]
Processing TAFA5--TBC1D22A:  46%|████▌     | 37/81 [00:03<00:04,  9.65it/s]
Processing TAFA5--TBC1D22A:  47%|████▋     | 38/81 [00:03<00:04,  9.65it/s]
Processing SLC27A1--BTBD2:  47%|████▋     | 38/81 [00:03<00:04,  9.65it/s] 
Processing SLC27A1--BTBD2:  48%|████▊     | 39/81 [00:04<00:04,  9.65it/s]
Processing AL359915.1--KPNA3:  48%|████▊     | 39/81 [00:04<00:04,  9.65it/s]
Processing AL359915.1--KPNA3:  49%|████▉     | 40/81 [00:04<00:04,  9.65it/s]
Processing ZDHHC8--RTN4R:  49%|████▉     | 40/81 [00:04<00:04,  9.65it/s]    
Processing ZDHHC8--RTN4R:  51%|█████     | 41/81 [00:04<00:04,  9.65it/s]
Processing TESK2--SYCP1:  51%|█████     | 41/81 [00:04<00:04,  9.65it/s] 
Processing TESK2--SYCP1:  52%|█████▏    | 42/81 [00:04<00:04,  9.65it/s]
Processing TBC1D16--BAIAP2:  52%|█████▏    | 42/81 [00:04<00:04,  9.65it/s]
Processing TBC1D16--BAIAP2:  53%|█████▎    | 43/81 [00:04<00:03,  9.65it/s]
Processing PWWP2B--INPP5A:  53%|█████▎    | 43/81 [00:04<00:03,  9.65it/s] 
Processing PWWP2B--INPP5A:  54%|█████▍    | 44/81 [00:04<00:03,  9.65it/s]
Processing NDUFA10--HDAC4:  54%|█████▍    | 44/81 [00:04<00:03,  9.65it/s]
Processing NDUFA10--HDAC4:  56%|█████▌    | 45/81 [00:04<00:03,  9.65it/s]
Processing MRPL23--CD81:  56%|█████▌    | 45/81 [00:04<00:03,  9.65it/s]  
Processing MRPL23--CD81:  57%|█████▋    | 46/81 [00:04<00:03,  9.65it/s]
Processing GNG7--GNA11:  57%|█████▋    | 46/81 [00:04<00:03,  9.65it/s] 
Processing GNG7--GNA11:  58%|█████▊    | 47/81 [00:04<00:03,  9.65it/s]
Processing GNG7--BTBD2:  58%|█████▊    | 47/81 [00:04<00:03,  9.65it/s]
Processing GNG7--BTBD2:  59%|█████▉    | 48/81 [00:04<00:03,  9.65it/s]
Processing DLGAP3--TMTC4:  59%|█████▉    | 48/81 [00:04<00:03,  9.65it/s]
Processing DLGAP3--TMTC4:  60%|██████    | 49/81 [00:05<00:03,  9.65it/s]
Processing DAZAP1--SBNO2:  60%|██████    | 49/81 [00:05<00:03,  9.65it/s]
Processing DAZAP1--SBNO2:  62%|██████▏   | 50/81 [00:05<00:03,  9.65it/s]
Processing CTBP1--MAEA:  62%|██████▏   | 50/81 [00:05<00:03,  9.65it/s]  
Processing CTBP1--MAEA:  63%|██████▎   | 51/81 [00:05<00:03,  9.65it/s]
Processing COL18A1--FAM207BP:  63%|██████▎   | 51/81 [00:05<00:03,  9.65it/s]
Processing COL18A1--FAM207BP:  64%|██████▍   | 52/81 [00:05<00:03,  9.65it/s]
Processing BSG--CSNK1G2:  64%|██████▍   | 52/81 [00:05<00:03,  9.65it/s]     
Processing BSG--CSNK1G2:  65%|██████▌   | 53/81 [00:05<00:02,  9.65it/s]
Processing ANKMY1--HDAC4:  65%|██████▌   | 53/81 [00:05<00:02,  9.65it/s]
Processing ANKMY1--HDAC4:  67%|██████▋   | 54/81 [00:05<00:02,  9.65it/s]
Processing FAM53A--CTBP1:  67%|██████▋   | 54/81 [00:05<00:02,  9.65it/s]
Processing FAM53A--CTBP1:  68%|██████▊   | 55/81 [00:05<00:02,  9.65it/s]
Processing IVNS1ABP--SWT1:  68%|██████▊   | 55/81 [00:05<00:02,  9.65it/s]
Processing IVNS1ABP--SWT1:  69%|██████▉   | 56/81 [00:05<00:02,  9.65it/s]
Processing BAIAP2--BAIAP2:  69%|██████▉   | 56/81 [00:05<00:02,  9.65it/s]
Processing BAIAP2--BAIAP2:  70%|███████   | 57/81 [00:05<00:02,  9.65it/s]
Processing BRF1--BRF1:  70%|███████   | 57/81 [00:05<00:02,  9.65it/s]    
Processing BRF1--BRF1:  72%|███████▏  | 58/81 [00:06<00:02,  9.62it/s]
Processing STX16--NPEPL1:  72%|███████▏  | 58/81 [00:06<00:02,  9.62it/s]
Processing STX16--NPEPL1:  73%|███████▎  | 59/81 [00:06<00:02,  9.63it/s]
Processing MYO10--AC092335.1:  73%|███████▎  | 59/81 [00:06<00:02,  9.63it/s]
Processing MYO10--AC092335.1:  74%|███████▍  | 60/81 [00:06<00:02,  9.64it/s]
Processing GTF2F2--AL354994.1:  74%|███████▍  | 60/81 [00:06<00:02,  9.64it/s]
Processing GTF2F2--AL354994.1:  75%|███████▌  | 61/81 [00:06<00:02,  9.64it/s]
Processing ACOT7--ACOT7:  75%|███████▌  | 61/81 [00:06<00:02,  9.64it/s]      
Processing ACOT7--ACOT7:  77%|███████▋  | 62/81 [00:06<00:01,  9.64it/s]
Processing TCERG1L--TCERG1L:  77%|███████▋  | 62/81 [00:06<00:01,  9.64it/s]
Processing TCERG1L--TCERG1L:  78%|███████▊  | 63/81 [00:06<00:01,  9.64it/s]
Processing KPNA3--LGMNP1:  78%|███████▊  | 63/81 [00:06<00:01,  9.64it/s]   
Processing KPNA3--LGMNP1:  79%|███████▉  | 64/81 [00:06<00:01,  9.64it/s]
Processing KPNA3--STARP1:  79%|███████▉  | 64/81 [00:06<00:01,  9.64it/s]
Processing KPNA3--STARP1:  80%|████████  | 65/81 [00:06<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  80%|████████  | 65/81 [00:06<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  81%|████████▏ | 66/81 [00:06<00:01,  9.65it/s]
Processing RSBN1--KL:  81%|████████▏ | 66/81 [00:06<00:01,  9.65it/s]    
Processing RSBN1--KL:  83%|████████▎ | 67/81 [00:06<00:01,  9.65it/s]
Processing RSBN1--STARD13:  83%|████████▎ | 67/81 [00:06<00:01,  9.65it/s]
Processing RSBN1--STARD13:  84%|████████▍ | 68/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC2:  84%|████████▍ | 68/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC2:  85%|████████▌ | 69/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  85%|████████▌ | 69/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  86%|████████▋ | 70/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHA13:  86%|████████▋ | 70/81 [00:07<00:01,  9.65it/s]
Processing PCDHA10--PCDHA13:  88%|████████▊ | 71/81 [00:07<00:01,  9.65it/s]
Processing IGFL1P2--HIF3A:  88%|████████▊ | 71/81 [00:07<00:01,  9.65it/s]  
Processing IGFL1P2--HIF3A:  89%|████████▉ | 72/81 [00:07<00:00,  9.65it/s]
Processing DCUN1D2--RAC1P8:  89%|████████▉ | 72/81 [00:07<00:00,  9.65it/s]
Processing DCUN1D2--RAC1P8:  90%|█████████ | 73/81 [00:07<00:00,  9.65it/s]
Processing DCUN1D2--AL353765.1:  90%|█████████ | 73/81 [00:07<00:00,  9.65it/s]
Processing DCUN1D2--AL353765.1:  91%|█████████▏| 74/81 [00:07<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  91%|█████████▏| 74/81 [00:07<00:00,  9.65it/s]  
Processing AC092807.3--DDAH1:  93%|█████████▎| 75/81 [00:07<00:00,  9.65it/s]
Processing UBAC2--LINC00358:  93%|█████████▎| 75/81 [00:07<00:00,  9.65it/s] 
Processing UBAC2--LINC00358:  94%|█████████▍| 76/81 [00:07<00:00,  9.65it/s]
Processing UBAC2--LINC01075:  94%|█████████▍| 76/81 [00:07<00:00,  9.65it/s]
Processing UBAC2--LINC01075:  95%|█████████▌| 77/81 [00:07<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  95%|█████████▌| 77/81 [00:07<00:00,  9.65it/s]    
Processing KLRC4--KLRK1:  96%|█████████▋| 78/81 [00:08<00:00,  9.65it/s]
Processing RANBP10--PLA2G15:  96%|█████████▋| 78/81 [00:08<00:00,  9.65it/s]
Processing RANBP10--PLA2G15:  98%|█████████▊| 79/81 [00:08<00:00,  9.65it/s]
Processing RSBN1--FAR1P1:  98%|█████████▊| 79/81 [00:08<00:00,  9.65it/s]   
Processing RSBN1--FAR1P1:  99%|█████████▉| 80/81 [00:08<00:00,  9.65it/s]
Processing RSBN1--KRT18P27:  99%|█████████▉| 80/81 [00:08<00:00,  9.65it/s]
Processing RSBN1--KRT18P27: 100%|██████████| 81/81 [00:08<00:00,  9.65it/s]
Processing RSBN1--KRT18P27: 100%|██████████| 81/81 [00:08<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory