[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	250652846
Known Splicing Events:	247859306
Partial Novel Splicing Events:	1364969
Novel Splicing Events:	1345428
Filtered Splicing Events:	83143

Total splicing  Junctions:	527539
Known Splicing Junctions:	272140
Partial Novel Splicing Junctions:	148743
Novel Splicing Junctions:	106656

===================================================================
Create BED file ...
Create Interact file ...