Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/4421cb359ff1d1c55fa27b91711bdd/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/08527b438e601c7ea76a631e959f48/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/08527b438e601c7ea76a631e959f48/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/98e082f27cd2c645140863f7479a24/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 250652846
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	250652846
Known Splicing Events:	247859306
Partial Novel Splicing Events:	1364969
Novel Splicing Events:	1345428
Filtered Splicing Events:	83143

Total splicing  Junctions:	527539
Known Splicing Junctions:	272140
Partial Novel Splicing Junctions:	148743
Novel Splicing Junctions:	106656

===================================================================
Create BED file ...
Create Interact file ...