Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9ff7d993bff5316a0d1fde84300ac1/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/684209427c50ebbfda0f44aacb46a9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/684209427c50ebbfda0f44aacb46a9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a3d6247466bac9ff49aca312dfb9cd/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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