File Info

Filename
aih-tih-sc-d5fda9-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/cc3d6434ccb65ccba6b880fcebae3d/aih-tih-sc-d5fda9-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:23:39
                             Started mapping on |	Jun 08 07:25:29
                                    Finished on |	Jun 08 07:31:30
       Mapping speed, Million of reads per hour |	287.05

                          Number of input reads |	28784902
                      Average input read length |	208
                                    UNIQUE READS:
                   Uniquely mapped reads number |	26797922
                        Uniquely mapped reads % |	93.10%
                          Average mapped length |	208.00
                       Number of splices: Total |	15518541
            Number of splices: Annotated (sjdb) |	15270262
                       Number of splices: GT/AG |	15342183
                       Number of splices: GC/AG |	113100
                       Number of splices: AT/AC |	10355
               Number of splices: Non-canonical |	52903
                      Mismatch rate per base, % |	0.58%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1217522
             % of reads mapped to multiple loci |	4.23%
        Number of reads mapped to too many loci |	86070
             % of reads mapped to too many loci |	0.30%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	90339
       % of reads unmapped: too many mismatches |	0.31%
            Number of reads unmapped: too short |	264675
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	48145
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	439075
                            % of chimeric reads |	1.53%