.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:MULTIQC

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/c672892fd27fd5b8ea579cf11b6b8f/.command.log
Size: 356.5 KB
Task: NFCORE_RNAFUSION:RNAFUSION:MULTIQC
Attempt
Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/ad85d181a97f24a2a90e2195ce9c72/aih-tih-sc-8e3550-R1_A23YTGFLT4_1.read_distribution.txt
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==> STAGING COMPLETE (2402 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.CkOIzMyWsy
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 2437/2437  
|    custom_content | preseq_metrics: Found 96 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 96 General Statistics columns
|    custom_content | rna_contamination: Found 96 General Statistics columns
|    custom_content | seqtools_metrics: Found 96 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 96 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|          kallisto | Found 96 reports
|            picard | Found 96 MarkDuplicates reports
|            preseq | Found 96 reports
|             rseqc | Found 96 read_distribution reports
|             rseqc | Found 96 inner_distance reports
|             rseqc | Found 96 read_duplication reports
|             rseqc | Found 96 junction_annotation reports
|             rseqc | Found 96 junction_saturation reports
|             rseqc | Found 96 infer_experiment reports
|             rseqc | Found 96 bam_stat reports
|              star | Found 96 reports and 96 gene count files
|             fastp | Found 96 reports
|            fastqc | Found 384 reports
|            fastqc | Found 192 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete