Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/4639db39df4089a895a91a4ae2468c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/4639db39df4089a895a91a4ae2468c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/ea9a6c31f9aae8dfb8872705a2d2c8/FFPE_V4_0002_RNA_0002_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/631d6f893462d36e00c1aa6e78df25/FFPE_V4_0002_RNA_0002_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory