File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/66710956abd9efae52e23a83b11a69/.command.log
Size
7.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-13d441-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/66710956abd9efae52e23a83b11a69/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/66710956abd9efae52e23a83b11a69/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/59ebd8a851333e565e32008ebbbe6b/aih-tih-sc-13d441-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/e9039edfcd814b028d336fa438a7ae/aih-tih-sc-13d441-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/32 [00:00<?, ?it/s]TLK2P1--AC110079.1
starfusion
RBBP4--FAM13C
starfusion
AC015712.1--FAM13C
starfusion
BMS1P7--AGAP13P
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGB7
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
KLRC4--KLRK1
arriba
CRYZL2P--SEC16B
arriba

Processing TLK2P1--AC110079.1:   0%|          | 0/32 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   3%|▎         | 1/32 [00:00<00:03,  9.23it/s]
Processing RBBP4--FAM13C:   3%|▎         | 1/32 [00:00<00:03,  9.23it/s]     
Processing RBBP4--FAM13C:   6%|▋         | 2/32 [00:00<00:03,  9.47it/s]
Processing AC015712.1--FAM13C:   6%|▋         | 2/32 [00:00<00:03,  9.47it/s]
Processing AC015712.1--FAM13C:   9%|▉         | 3/32 [00:00<00:03,  9.55it/s]
Processing BMS1P7--AGAP13P:   9%|▉         | 3/32 [00:00<00:03,  9.55it/s]   
Processing BMS1P7--AGAP13P:  12%|█▎        | 4/32 [00:00<00:02,  9.59it/s]
Processing TLK2--AC240565.1:  12%|█▎        | 4/32 [00:00<00:02,  9.59it/s]
Processing TLK2--AC240565.1:  16%|█▌        | 5/32 [00:00<00:02,  9.60it/s]
Processing STX16--NPEPL1:  16%|█▌        | 5/32 [00:00<00:02,  9.60it/s]   
Processing STX16--NPEPL1:  19%|█▉        | 6/32 [00:00<00:02,  9.62it/s]
Processing TVP23C--CDRT4:  19%|█▉        | 6/32 [00:00<00:02,  9.62it/s]
Processing TVP23C--CDRT4:  22%|██▏       | 7/32 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  22%|██▏       | 7/32 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  25%|██▌       | 8/32 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  25%|██▌       | 8/32 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  28%|██▊       | 9/32 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  28%|██▊       | 9/32 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  31%|███▏      | 10/32 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  31%|███▏      | 10/32 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  34%|███▍      | 11/32 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  34%|███▍      | 11/32 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  38%|███▊      | 12/32 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 12/32 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  41%|████      | 13/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  41%|████      | 13/32 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  44%|████▍     | 14/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  44%|████▍     | 14/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  47%|████▋     | 15/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  47%|████▋     | 15/32 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGC3:  50%|█████     | 16/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  50%|█████     | 16/32 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  53%|█████▎    | 17/32 [00:01<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  53%|█████▎    | 17/32 [00:01<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  56%|█████▋    | 18/32 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  56%|█████▋    | 18/32 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  59%|█████▉    | 19/32 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  59%|█████▉    | 19/32 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  62%|██████▎   | 20/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  62%|██████▎   | 20/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  66%|██████▌   | 21/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  66%|██████▌   | 21/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  69%|██████▉   | 22/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  69%|██████▉   | 22/32 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  72%|███████▏  | 23/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  72%|███████▏  | 23/32 [00:02<00:00,  9.64it/s] 
Processing PCDHGA5--PCDHGA9:  75%|███████▌  | 24/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  75%|███████▌  | 24/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  78%|███████▊  | 25/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGC3:  78%|███████▊  | 25/32 [00:02<00:00,  9.64it/s] 
Processing PCDHGA5--PCDHGC3:  81%|████████▏ | 26/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  81%|████████▏ | 26/32 [00:02<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  84%|████████▍ | 27/32 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  84%|████████▍ | 27/32 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  88%|████████▊ | 28/32 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  88%|████████▊ | 28/32 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  91%|█████████ | 29/32 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHA13:  91%|█████████ | 29/32 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHA13:  94%|█████████▍| 30/32 [00:03<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  94%|█████████▍| 30/32 [00:03<00:00,  9.64it/s]    
Processing KLRC4--KLRK1:  97%|█████████▋| 31/32 [00:03<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  97%|█████████▋| 31/32 [00:03<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 32/32 [00:03<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 32/32 [00:03<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory