File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/caf517606ad041d0ef98fee86a301c/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:22:02
                             Started mapping on |	Jun 08 10:28:30
                                    Finished on |	Jun 08 12:34:08
       Mapping speed, Million of reads per hour |	138.78

                          Number of input reads |	290592443
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	276461612
                        Uniquely mapped reads % |	95.14%
                          Average mapped length |	217.88
                       Number of splices: Total |	221351832
            Number of splices: Annotated (sjdb) |	217230705
                       Number of splices: GT/AG |	218337822
                       Number of splices: GC/AG |	1555473
                       Number of splices: AT/AC |	142909
               Number of splices: Non-canonical |	1315628
                      Mismatch rate per base, % |	0.39%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.13
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10507498
             % of reads mapped to multiple loci |	3.62%
        Number of reads mapped to too many loci |	651174
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2115588
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	856571
                     % of reads unmapped: other |	0.29%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%