File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/2e9a777ffcc1ba438ed387aaa38b7a/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:14:47
                             Started mapping on |	Jun 08 10:22:07
                                    Finished on |	Jun 08 11:30:44
       Mapping speed, Million of reads per hour |	245.91

                          Number of input reads |	281224084
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	269660171
                        Uniquely mapped reads % |	95.89%
                          Average mapped length |	239.20
                       Number of splices: Total |	282105977
            Number of splices: Annotated (sjdb) |	278170722
                       Number of splices: GT/AG |	278639250
                       Number of splices: GC/AG |	1930538
                       Number of splices: AT/AC |	224390
               Number of splices: Non-canonical |	1311799
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.19
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.64
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9015890
             % of reads mapped to multiple loci |	3.21%
        Number of reads mapped to too many loci |	301926
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1857360
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	388737
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%