File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/30cafa6cc011ae98082acb5daf27dd/.command.log
Size
12.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-01c779-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/d83733c56609e2a043b6edacd7df4d/aih-tih-sc-01c779-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/30cafa6cc011ae98082acb5daf27dd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/30cafa6cc011ae98082acb5daf27dd/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/dac5ffaf18b5f832562120594934fa/aih-tih-sc-01c779-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RANBP2--LIMS1
starfusion
arriba
VOPP1--FKBP9P1
starfusion
arriba
PCCA--CLYBL
starfusion
arriba
SIPA1L2--ANKRD29
starfusion
arriba
MARK2--CCDC82
starfusion
arriba
CYLD--NKD1
starfusion
arriba
ITPR2--TM7SF3
starfusion
arriba
MED21--AC023051.1
starfusion
arriba
EXPH5--TSPAN18
starfusion
arriba
EXT2--EXPH5
starfusion
arriba
UTRN--STX11
starfusion
arriba
STARD13--AL139383.1
starfusion
LAMTOR2--HDGF
starfusion
CIZ1--GOLGA2
starfusion
SNX14--SYNCRIP
starfusion
SFMBT1--TKT
starfusion
TLK2P1--AC110079.1
starfusion
USP50--TRPM7
starfusion
STX16--NPEPL1
starfusion
arriba
RBM39--LINC01393
starfusion
PAPOLA--AK7
starfusion
CARS1--OSBPL5
starfusion
CYB5B--MPP2
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TECPR1--BAIAP2L1
arriba
TECPR1--PPIAP82
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
TMEM241--NPC1
arriba
TMEM241--ANKRD29
arriba
TVP23C--CDRT4
arriba
COQ6--SCG2
arriba
COQ6--MLXP1
arriba
ABL2--CYCSP53
arriba
ABL2--PRRC2C
arriba
TSPAN18--MED28P5
arriba
TSPAN18--AP001836.1
arriba
KLRC4--KLRK1
arriba
CEP89--RPS3AP50
arriba
CEP89--AKR1B1P7
arriba
DHX9--LINC01720
arriba
PTPRK--GRID2
arriba
BAD--AC024405.1
arriba
BAD--OR4C50P
arriba
MRPS14--LINC01724
arriba
PGAP1--PGAP1
arriba
PGAP1--ANKRD44
arriba
PMS2P8--CCDC146
arriba
COG8--U3
arriba
COG8--LSM12
arriba

  0%|          | 0/60 [00:00<?, ?it/s]
Processing RANBP2--LIMS1:   0%|          | 0/60 [00:00<?, ?it/s]
Processing RANBP2--LIMS1:   2%|▏         | 1/60 [00:00<00:06,  9.26it/s]
Processing VOPP1--FKBP9P1:   2%|▏         | 1/60 [00:00<00:06,  9.26it/s]
Processing VOPP1--FKBP9P1:   3%|▎         | 2/60 [00:00<00:06,  9.49it/s]
Processing PCCA--CLYBL:   3%|▎         | 2/60 [00:00<00:06,  9.49it/s]   
Processing PCCA--CLYBL:   5%|▌         | 3/60 [00:00<00:05,  9.57it/s]
Processing SIPA1L2--ANKRD29:   5%|▌         | 3/60 [00:00<00:05,  9.57it/s]
Processing SIPA1L2--ANKRD29:   7%|▋         | 4/60 [00:00<00:05,  9.60it/s]
Processing MARK2--CCDC82:   7%|▋         | 4/60 [00:00<00:05,  9.60it/s]   
Processing MARK2--CCDC82:   8%|▊         | 5/60 [00:00<00:05,  9.62it/s]
Processing CYLD--NKD1:   8%|▊         | 5/60 [00:00<00:05,  9.62it/s]   
Processing CYLD--NKD1:  10%|█         | 6/60 [00:00<00:05,  9.63it/s]
Processing ITPR2--TM7SF3:  10%|█         | 6/60 [00:00<00:05,  9.63it/s]
Processing ITPR2--TM7SF3:  12%|█▏        | 7/60 [00:00<00:05,  9.64it/s]
Processing MED21--AC023051.1:  12%|█▏        | 7/60 [00:00<00:05,  9.64it/s]
Processing MED21--AC023051.1:  13%|█▎        | 8/60 [00:00<00:05,  9.64it/s]
Processing EXPH5--TSPAN18:  13%|█▎        | 8/60 [00:00<00:05,  9.64it/s]   
Processing EXPH5--TSPAN18:  15%|█▌        | 9/60 [00:00<00:05,  9.64it/s]
Processing EXT2--EXPH5:  15%|█▌        | 9/60 [00:00<00:05,  9.64it/s]   
Processing EXT2--EXPH5:  17%|█▋        | 10/60 [00:01<00:05,  9.65it/s]
Processing UTRN--STX11:  17%|█▋        | 10/60 [00:01<00:05,  9.65it/s]
Processing UTRN--STX11:  18%|█▊        | 11/60 [00:01<00:05,  9.65it/s]
Processing STARD13--AL139383.1:  18%|█▊        | 11/60 [00:01<00:05,  9.65it/s]
Processing STARD13--AL139383.1:  20%|██        | 12/60 [00:01<00:04,  9.65it/s]
Processing LAMTOR2--HDGF:  20%|██        | 12/60 [00:01<00:04,  9.65it/s]      
Processing LAMTOR2--HDGF:  22%|██▏       | 13/60 [00:01<00:04,  9.65it/s]
Processing CIZ1--GOLGA2:  22%|██▏       | 13/60 [00:01<00:04,  9.65it/s] 
Processing CIZ1--GOLGA2:  23%|██▎       | 14/60 [00:01<00:04,  9.65it/s]
Processing SNX14--SYNCRIP:  23%|██▎       | 14/60 [00:01<00:04,  9.65it/s]
Processing SNX14--SYNCRIP:  25%|██▌       | 15/60 [00:01<00:04,  9.65it/s]
Processing SFMBT1--TKT:  25%|██▌       | 15/60 [00:01<00:04,  9.65it/s]   
Processing SFMBT1--TKT:  27%|██▋       | 16/60 [00:01<00:04,  9.65it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 16/60 [00:01<00:04,  9.65it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 17/60 [00:01<00:04,  9.65it/s]
Processing USP50--TRPM7:  28%|██▊       | 17/60 [00:01<00:04,  9.65it/s]      
Processing USP50--TRPM7:  30%|███       | 18/60 [00:01<00:04,  9.65it/s]
Processing STX16--NPEPL1:  30%|███       | 18/60 [00:01<00:04,  9.65it/s]
Processing STX16--NPEPL1:  32%|███▏      | 19/60 [00:01<00:04,  9.65it/s]
Processing RBM39--LINC01393:  32%|███▏      | 19/60 [00:01<00:04,  9.65it/s]
Processing RBM39--LINC01393:  33%|███▎      | 20/60 [00:02<00:04,  9.65it/s]
Processing PAPOLA--AK7:  33%|███▎      | 20/60 [00:02<00:04,  9.65it/s]     
Processing PAPOLA--AK7:  35%|███▌      | 21/60 [00:02<00:04,  9.65it/s]
Processing CARS1--OSBPL5:  35%|███▌      | 21/60 [00:02<00:04,  9.65it/s]
Processing CARS1--OSBPL5:  37%|███▋      | 22/60 [00:02<00:03,  9.65it/s]
Processing CYB5B--MPP2:  37%|███▋      | 22/60 [00:02<00:03,  9.65it/s]  
Processing CYB5B--MPP2:  38%|███▊      | 23/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 23/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  40%|████      | 24/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  40%|████      | 24/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  42%|████▏     | 25/60 [00:02<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 25/60 [00:02<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGA10:  43%|████▎     | 26/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  43%|████▎     | 26/60 [00:02<00:03,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  45%|████▌     | 27/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  45%|████▌     | 27/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  47%|████▋     | 28/60 [00:02<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  47%|████▋     | 28/60 [00:02<00:03,  9.65it/s] 
Processing PCDHGB2--PCDHGC3:  48%|████▊     | 29/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  48%|████▊     | 29/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  50%|█████     | 30/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 30/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  52%|█████▏    | 31/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  52%|█████▏    | 31/60 [00:03<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  53%|█████▎    | 32/60 [00:03<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  53%|█████▎    | 32/60 [00:03<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  55%|█████▌    | 33/60 [00:03<00:02,  9.65it/s]
Processing TECPR1--BAIAP2L1:  55%|█████▌    | 33/60 [00:03<00:02,  9.65it/s]
Processing TECPR1--BAIAP2L1:  57%|█████▋    | 34/60 [00:03<00:02,  9.65it/s]
Processing TECPR1--PPIAP82:  57%|█████▋    | 34/60 [00:03<00:02,  9.65it/s] 
Processing TECPR1--PPIAP82:  58%|█████▊    | 35/60 [00:03<00:02,  9.65it/s]
Processing PCDHA4--PCDHA13:  58%|█████▊    | 35/60 [00:03<00:02,  9.65it/s]
Processing PCDHA4--PCDHA13:  60%|██████    | 36/60 [00:03<00:02,  9.66it/s]
Processing PCDHA4--PCDHAC1:  60%|██████    | 36/60 [00:03<00:02,  9.66it/s]
Processing PCDHA4--PCDHAC1:  62%|██████▏   | 37/60 [00:03<00:02,  9.65it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▏   | 37/60 [00:03<00:02,  9.65it/s]
Processing PCDHA4--PCDHAC2:  63%|██████▎   | 38/60 [00:03<00:02,  9.66it/s]
Processing TMEM241--NPC1:  63%|██████▎   | 38/60 [00:03<00:02,  9.66it/s]  
Processing TMEM241--NPC1:  65%|██████▌   | 39/60 [00:04<00:02,  9.66it/s]
Processing TMEM241--ANKRD29:  65%|██████▌   | 39/60 [00:04<00:02,  9.66it/s]
Processing TMEM241--ANKRD29:  67%|██████▋   | 40/60 [00:04<00:02,  9.65it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 40/60 [00:04<00:02,  9.65it/s]   
Processing TVP23C--CDRT4:  68%|██████▊   | 41/60 [00:04<00:01,  9.66it/s]
Processing COQ6--SCG2:  68%|██████▊   | 41/60 [00:04<00:01,  9.66it/s]   
Processing COQ6--SCG2:  70%|███████   | 42/60 [00:04<00:01,  9.66it/s]
Processing COQ6--MLXP1:  70%|███████   | 42/60 [00:04<00:01,  9.66it/s]
Processing COQ6--MLXP1:  72%|███████▏  | 43/60 [00:04<00:01,  9.66it/s]
Processing ABL2--CYCSP53:  72%|███████▏  | 43/60 [00:04<00:01,  9.66it/s]
Processing ABL2--CYCSP53:  73%|███████▎  | 44/60 [00:04<00:01,  9.65it/s]
Processing ABL2--PRRC2C:  73%|███████▎  | 44/60 [00:04<00:01,  9.65it/s] 
Processing ABL2--PRRC2C:  75%|███████▌  | 45/60 [00:04<00:01,  9.65it/s]
Processing TSPAN18--MED28P5:  75%|███████▌  | 45/60 [00:04<00:01,  9.65it/s]
Processing TSPAN18--MED28P5:  77%|███████▋  | 46/60 [00:04<00:01,  9.65it/s]
Processing TSPAN18--AP001836.1:  77%|███████▋  | 46/60 [00:04<00:01,  9.65it/s]
Processing TSPAN18--AP001836.1:  78%|███████▊  | 47/60 [00:04<00:01,  9.65it/s]
Processing KLRC4--KLRK1:  78%|███████▊  | 47/60 [00:04<00:01,  9.65it/s]       
Processing KLRC4--KLRK1:  80%|████████  | 48/60 [00:04<00:01,  9.65it/s]
Processing CEP89--RPS3AP50:  80%|████████  | 48/60 [00:04<00:01,  9.65it/s]
Processing CEP89--RPS3AP50:  82%|████████▏ | 49/60 [00:05<00:01,  9.65it/s]
Processing CEP89--AKR1B1P7:  82%|████████▏ | 49/60 [00:05<00:01,  9.65it/s]
Processing CEP89--AKR1B1P7:  83%|████████▎ | 50/60 [00:05<00:01,  9.65it/s]
Processing DHX9--LINC01720:  83%|████████▎ | 50/60 [00:05<00:01,  9.65it/s]
Processing DHX9--LINC01720:  85%|████████▌ | 51/60 [00:05<00:00,  9.65it/s]
Processing PTPRK--GRID2:  85%|████████▌ | 51/60 [00:05<00:00,  9.65it/s]   
Processing PTPRK--GRID2:  87%|████████▋ | 52/60 [00:05<00:00,  9.65it/s]
Processing BAD--AC024405.1:  87%|████████▋ | 52/60 [00:05<00:00,  9.65it/s]
Processing BAD--AC024405.1:  88%|████████▊ | 53/60 [00:05<00:00,  9.63it/s]
Processing BAD--OR4C50P:  88%|████████▊ | 53/60 [00:05<00:00,  9.63it/s]   
Processing BAD--OR4C50P:  90%|█████████ | 54/60 [00:05<00:00,  9.64it/s]
Processing MRPS14--LINC01724:  90%|█████████ | 54/60 [00:05<00:00,  9.64it/s]
Processing MRPS14--LINC01724:  92%|█████████▏| 55/60 [00:05<00:00,  9.64it/s]
Processing PGAP1--PGAP1:  92%|█████████▏| 55/60 [00:05<00:00,  9.64it/s]     
Processing PGAP1--PGAP1:  93%|█████████▎| 56/60 [00:05<00:00,  9.65it/s]
Processing PGAP1--ANKRD44:  93%|█████████▎| 56/60 [00:05<00:00,  9.65it/s]
Processing PGAP1--ANKRD44:  95%|█████████▌| 57/60 [00:05<00:00,  9.65it/s]
Processing PMS2P8--CCDC146:  95%|█████████▌| 57/60 [00:05<00:00,  9.65it/s]
Processing PMS2P8--CCDC146:  97%|█████████▋| 58/60 [00:06<00:00,  9.65it/s]
Processing COG8--U3:  97%|█████████▋| 58/60 [00:06<00:00,  9.65it/s]       
Processing COG8--U3:  98%|█████████▊| 59/60 [00:06<00:00,  9.65it/s]
Processing COG8--LSM12:  98%|█████████▊| 59/60 [00:06<00:00,  9.65it/s]
Processing COG8--LSM12: 100%|██████████| 60/60 [00:06<00:00,  9.65it/s]
Processing COG8--LSM12: 100%|██████████| 60/60 [00:06<00:00,  9.65it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory