Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/bde265ecf30fc43d0923a3168d9fdc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/bde265ecf30fc43d0923a3168d9fdc/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/9b933576f7cd8001583e0a275403a5/aih-tih-sc-c400f1-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/1e09d254d75c19d21d57c31e5e54e4/aih-tih-sc-c400f1-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
STK3--VPS13B
starfusion
arriba
RASA1--AC018754.1
starfusion
arriba
CUL4A--SETDB2
starfusion
arriba
LRRC69--CSMD3
starfusion
arriba
RNF19A--RGS22
starfusion
arriba
SETDB2--GPC6
starfusion
arriba
PRSS27--TPSB2
starfusion
EPSTI1--OBI1-AS1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
NLRP2--ADAMTS13
starfusion
TLK2--AC240565.1
starfusion
CLYBL--NALCN
starfusion
arriba
GUSB--NAIP
starfusion
KRTAP5-9--KRTAP5-7
arriba
KRTAP5-9--KRTAP5-8
arriba
RAB20--ADPRHL1
arriba
DSG2--MTCL1
arriba
TVP23C--CDRT4
arriba
KDM2A--KRTAP5-8
arriba
KDM2A--KRTAP5-9
arriba
STX16--NPEPL1
arriba
CDK8--ENOX1
arriba
DOCK9--AL356515.1
arriba
DOCK9--LINC00330
arriba
NUDCD1--TMEM74
arriba
NUDCD1--AC104248.1
arriba
VPS13B--OXR1
arriba
CHERP--CYP4F8
arriba
CHERP--CYP4F3
arriba

  0%|          | 0/29 [00:00<?, ?it/s]
Processing STK3--VPS13B:   0%|          | 0/29 [00:00<?, ?it/s]
Processing STK3--VPS13B:   3%|▎         | 1/29 [00:00<00:03,  9.23it/s]
Processing RASA1--AC018754.1:   3%|▎         | 1/29 [00:00<00:03,  9.23it/s]
Processing RASA1--AC018754.1:   7%|▋         | 2/29 [00:00<00:02,  9.47it/s]
Processing CUL4A--SETDB2:   7%|▋         | 2/29 [00:00<00:02,  9.47it/s]    
Processing CUL4A--SETDB2:  10%|█         | 3/29 [00:00<00:02,  9.54it/s]
Processing LRRC69--CSMD3:  10%|█         | 3/29 [00:00<00:02,  9.54it/s]
Processing LRRC69--CSMD3:  14%|█▍        | 4/29 [00:00<00:02,  9.58it/s]
Processing RNF19A--RGS22:  14%|█▍        | 4/29 [00:00<00:02,  9.58it/s]
Processing RNF19A--RGS22:  17%|█▋        | 5/29 [00:00<00:02,  9.60it/s]
Processing SETDB2--GPC6:  17%|█▋        | 5/29 [00:00<00:02,  9.60it/s] 
Processing SETDB2--GPC6:  21%|██        | 6/29 [00:00<00:02,  9.62it/s]
Processing PRSS27--TPSB2:  21%|██        | 6/29 [00:00<00:02,  9.62it/s]
Processing PRSS27--TPSB2:  24%|██▍       | 7/29 [00:00<00:02,  9.63it/s]
Processing EPSTI1--OBI1-AS1:  24%|██▍       | 7/29 [00:00<00:02,  9.63it/s]
Processing EPSTI1--OBI1-AS1:  28%|██▊       | 8/29 [00:00<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 8/29 [00:00<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  31%|███       | 9/29 [00:00<00:02,  9.63it/s]
Processing NLRP2--ADAMTS13:  31%|███       | 9/29 [00:00<00:02,  9.63it/s]   
Processing NLRP2--ADAMTS13:  34%|███▍      | 10/29 [00:01<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  34%|███▍      | 10/29 [00:01<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 11/29 [00:01<00:01,  9.63it/s]
Processing CLYBL--NALCN:  38%|███▊      | 11/29 [00:01<00:01,  9.63it/s]    
Processing CLYBL--NALCN:  41%|████▏     | 12/29 [00:01<00:01,  9.64it/s]
Processing GUSB--NAIP:  41%|████▏     | 12/29 [00:01<00:01,  9.64it/s]  
Processing GUSB--NAIP:  45%|████▍     | 13/29 [00:01<00:01,  9.63it/s]
Processing KRTAP5-9--KRTAP5-7:  45%|████▍     | 13/29 [00:01<00:01,  9.63it/s]
Processing KRTAP5-9--KRTAP5-7:  48%|████▊     | 14/29 [00:01<00:01,  9.63it/s]
Processing KRTAP5-9--KRTAP5-8:  48%|████▊     | 14/29 [00:01<00:01,  9.63it/s]
Processing KRTAP5-9--KRTAP5-8:  52%|█████▏    | 15/29 [00:01<00:01,  9.64it/s]
Processing RAB20--ADPRHL1:  52%|█████▏    | 15/29 [00:01<00:01,  9.64it/s]    
Processing RAB20--ADPRHL1:  55%|█████▌    | 16/29 [00:01<00:01,  9.64it/s]
Processing DSG2--MTCL1:  55%|█████▌    | 16/29 [00:01<00:01,  9.64it/s]   
Processing DSG2--MTCL1:  59%|█████▊    | 17/29 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  59%|█████▊    | 17/29 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  62%|██████▏   | 18/29 [00:01<00:01,  9.64it/s]
Processing KDM2A--KRTAP5-8:  62%|██████▏   | 18/29 [00:01<00:01,  9.64it/s]
Processing KDM2A--KRTAP5-8:  66%|██████▌   | 19/29 [00:01<00:01,  9.64it/s]
Processing KDM2A--KRTAP5-9:  66%|██████▌   | 19/29 [00:01<00:01,  9.64it/s]
Processing KDM2A--KRTAP5-9:  69%|██████▉   | 20/29 [00:02<00:00,  9.64it/s]
Processing STX16--NPEPL1:  69%|██████▉   | 20/29 [00:02<00:00,  9.64it/s]  
Processing STX16--NPEPL1:  72%|███████▏  | 21/29 [00:02<00:00,  9.64it/s]
Processing CDK8--ENOX1:  72%|███████▏  | 21/29 [00:02<00:00,  9.64it/s]  
Processing CDK8--ENOX1:  76%|███████▌  | 22/29 [00:02<00:00,  9.64it/s]
Processing DOCK9--AL356515.1:  76%|███████▌  | 22/29 [00:02<00:00,  9.64it/s]
Processing DOCK9--AL356515.1:  79%|███████▉  | 23/29 [00:02<00:00,  9.65it/s]
Processing DOCK9--LINC00330:  79%|███████▉  | 23/29 [00:02<00:00,  9.65it/s] 
Processing DOCK9--LINC00330:  83%|████████▎ | 24/29 [00:02<00:00,  9.64it/s]
Processing NUDCD1--TMEM74:  83%|████████▎ | 24/29 [00:02<00:00,  9.64it/s]  
Processing NUDCD1--TMEM74:  86%|████████▌ | 25/29 [00:02<00:00,  9.65it/s]
Processing NUDCD1--AC104248.1:  86%|████████▌ | 25/29 [00:02<00:00,  9.65it/s]
Processing NUDCD1--AC104248.1:  90%|████████▉ | 26/29 [00:02<00:00,  9.65it/s]
Processing VPS13B--OXR1:  90%|████████▉ | 26/29 [00:02<00:00,  9.65it/s]      
Processing VPS13B--OXR1:  93%|█████████▎| 27/29 [00:02<00:00,  9.64it/s]
Processing CHERP--CYP4F8:  93%|█████████▎| 27/29 [00:02<00:00,  9.64it/s]
Processing CHERP--CYP4F8:  97%|█████████▋| 28/29 [00:02<00:00,  9.64it/s]
Processing CHERP--CYP4F3:  97%|█████████▋| 28/29 [00:02<00:00,  9.64it/s]
Processing CHERP--CYP4F3: 100%|██████████| 29/29 [00:03<00:00,  9.65it/s]
Processing CHERP--CYP4F3: 100%|██████████| 29/29 [00:03<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory