Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/00786a9469d2db7a12fa58ef5d7522/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/00786a9469d2db7a12fa58ef5d7522/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/b0a41b2ba8998bf3da304055ad4b11/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c5643fa7f81cd0ecf8198fa965c624/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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