File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/69fee63b856cb4e0389ff8b22adc03/.command.log
Size
5.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-64cd51-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/69fee63b856cb4e0389ff8b22adc03/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/69fee63b856cb4e0389ff8b22adc03/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/63eba168e4afabf13a56d9789872c3/aih-tih-sc-64cd51-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/0e529533228f3863aefe01622b26ab/aih-tih-sc-64cd51-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NUP214--LAMC3
starfusion
arriba
PTPN12--GNAI1
starfusion
arriba
PSME4--ACYP2
starfusion
arriba
SMARCA5--CACNA1C
starfusion
arriba
TRMT2A--PRODH
starfusion
arriba
SSR1--AL031123.1
starfusion
CAAP1--LRRC19
starfusion
arriba
ACTBP6--ACTB
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
FRAS1--TBCK
starfusion
arriba
CDV3--MT-RNR2
starfusion
SCLT1--LINC02173
starfusion
arriba
GALNT17--AUTS2
starfusion
arriba
ARID1A--ARID1A
arriba
TVP23C--CDRT4
arriba
ZMIZ1--DLG5-AS1
arriba
ZMIZ1--H2AZP5
arriba
AC015911.9--SLFN12L
arriba
CCDC169--SOHLH2
arriba
B3GNTL1--AC139099.2
arriba
AC019197.1--KCNH7
arriba
AC019197.1--RPL7P61
arriba
CEMIP2--TMC1
arriba

  0%|          | 0/24 [00:00<?, ?it/s]
Processing NUP214--LAMC3:   0%|          | 0/24 [00:00<?, ?it/s]
Processing NUP214--LAMC3:   4%|▍         | 1/24 [00:00<00:02,  8.68it/s]
Processing PTPN12--GNAI1:   4%|▍         | 1/24 [00:00<00:02,  8.68it/s]
Processing PTPN12--GNAI1:   8%|▊         | 2/24 [00:00<00:02,  9.10it/s]
Processing PSME4--ACYP2:   8%|▊         | 2/24 [00:00<00:02,  9.10it/s] 
Processing PSME4--ACYP2:  12%|█▎        | 3/24 [00:00<00:02,  9.25it/s]
Processing SMARCA5--CACNA1C:  12%|█▎        | 3/24 [00:00<00:02,  9.25it/s]
Processing SMARCA5--CACNA1C:  17%|█▋        | 4/24 [00:00<00:02,  9.31it/s]
Processing TRMT2A--PRODH:  17%|█▋        | 4/24 [00:00<00:02,  9.31it/s]   
Processing TRMT2A--PRODH:  21%|██        | 5/24 [00:00<00:02,  9.35it/s]
Processing SSR1--AL031123.1:  21%|██        | 5/24 [00:00<00:02,  9.35it/s]
Processing SSR1--AL031123.1:  25%|██▌       | 6/24 [00:00<00:01,  9.38it/s]
Processing CAAP1--LRRC19:  25%|██▌       | 6/24 [00:00<00:01,  9.38it/s]   
Processing CAAP1--LRRC19:  29%|██▉       | 7/24 [00:00<00:01,  9.40it/s]
Processing ACTBP6--ACTB:  29%|██▉       | 7/24 [00:00<00:01,  9.40it/s] 
Processing ACTBP6--ACTB:  33%|███▎      | 8/24 [00:00<00:01,  9.41it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 8/24 [00:00<00:01,  9.41it/s]
Processing TLK2P1--AC110079.1:  38%|███▊      | 9/24 [00:00<00:01,  9.42it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 9/24 [00:00<00:01,  9.42it/s]  
Processing TLK2--AC240565.1:  42%|████▏     | 10/24 [00:01<00:01,  9.42it/s]
Processing FRAS1--TBCK:  42%|████▏     | 10/24 [00:01<00:01,  9.42it/s]     
Processing FRAS1--TBCK:  46%|████▌     | 11/24 [00:01<00:01,  9.42it/s]
Processing CDV3--MT-RNR2:  46%|████▌     | 11/24 [00:01<00:01,  9.42it/s]
Processing CDV3--MT-RNR2:  50%|█████     | 12/24 [00:01<00:01,  9.42it/s]
Processing SCLT1--LINC02173:  50%|█████     | 12/24 [00:01<00:01,  9.42it/s]
Processing SCLT1--LINC02173:  54%|█████▍    | 13/24 [00:01<00:01,  9.42it/s]
Processing GALNT17--AUTS2:  54%|█████▍    | 13/24 [00:01<00:01,  9.42it/s]  
Processing GALNT17--AUTS2:  58%|█████▊    | 14/24 [00:01<00:01,  9.42it/s]
Processing ARID1A--ARID1A:  58%|█████▊    | 14/24 [00:01<00:01,  9.42it/s]
Processing ARID1A--ARID1A:  62%|██████▎   | 15/24 [00:01<00:00,  9.42it/s]
Processing TVP23C--CDRT4:  62%|██████▎   | 15/24 [00:01<00:00,  9.42it/s] 
Processing TVP23C--CDRT4:  67%|██████▋   | 16/24 [00:01<00:00,  9.42it/s]
Processing ZMIZ1--DLG5-AS1:  67%|██████▋   | 16/24 [00:01<00:00,  9.42it/s]
Processing ZMIZ1--DLG5-AS1:  71%|███████   | 17/24 [00:01<00:00,  9.42it/s]
Processing ZMIZ1--H2AZP5:  71%|███████   | 17/24 [00:01<00:00,  9.42it/s]  
Processing ZMIZ1--H2AZP5:  75%|███████▌  | 18/24 [00:01<00:00,  9.42it/s]
Processing AC015911.9--SLFN12L:  75%|███████▌  | 18/24 [00:01<00:00,  9.42it/s]
Processing AC015911.9--SLFN12L:  79%|███████▉  | 19/24 [00:02<00:00,  9.42it/s]
Processing CCDC169--SOHLH2:  79%|███████▉  | 19/24 [00:02<00:00,  9.42it/s]    
Processing CCDC169--SOHLH2:  83%|████████▎ | 20/24 [00:02<00:00,  9.42it/s]
Processing B3GNTL1--AC139099.2:  83%|████████▎ | 20/24 [00:02<00:00,  9.42it/s]
Processing B3GNTL1--AC139099.2:  88%|████████▊ | 21/24 [00:02<00:00,  9.42it/s]
Processing AC019197.1--KCNH7:  88%|████████▊ | 21/24 [00:02<00:00,  9.42it/s]  
Processing AC019197.1--KCNH7:  92%|█████████▏| 22/24 [00:02<00:00,  9.41it/s]
Processing AC019197.1--RPL7P61:  92%|█████████▏| 22/24 [00:02<00:00,  9.41it/s]
Processing AC019197.1--RPL7P61:  96%|█████████▌| 23/24 [00:02<00:00,  9.42it/s]
Processing CEMIP2--TMC1:  96%|█████████▌| 23/24 [00:02<00:00,  9.42it/s]       
Processing CEMIP2--TMC1: 100%|██████████| 24/24 [00:02<00:00,  9.42it/s]
Processing CEMIP2--TMC1: 100%|██████████| 24/24 [00:02<00:00,  9.39it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory