Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/282d9efcab18a7b58ddfabea63afdd/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/21353e38b53d3c7f82e9c920c0efb6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/21353e38b53d3c7f82e9c920c0efb6/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/725082642da95ad61f040b60f0c363/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
GUCD1--UPB1
starfusion
arriba
RIMKLB--AC007450.1
starfusion
arriba
ERCC1--EXOC3L2
starfusion
NDUFA9--ACSM4
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
ELAPOR1--VAV3
starfusion
arriba
DDHD2--ADAM32
starfusion
arriba
PRSS27--TPSB2
starfusion
NAGA--DGCR2
starfusion
arriba
SVIL--KIAA1217
starfusion
arriba
TLK2P1--AC110079.1
starfusion
NAGA--DGCR11
starfusion
arriba
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
TMEM134--GAB4
starfusion
WAC--PLPP4
starfusion
SGSM1--MYCL-AS1
starfusion
arriba
TVP23C--CDRT4
arriba
LINC01953--IKZF2
arriba
AC079610.2--IKZF2
arriba
WAC--ZRANB1
arriba
RIMKLB--LINC01252
arriba
WAC--AL355298.1
arriba
WAC--RPL21P16
arriba
AC092807.3--DDAH1
arriba
ERC1--ADAM2
arriba
NEBL--LINC01153
arriba
NEBL--RN7SKP167
arriba
SGSM1--MYCL
arriba
0%| | 0/29 [00:00<?, ?it/s]
Processing GUCD1--UPB1: 0%| | 0/29 [00:00<?, ?it/s]
Processing GUCD1--UPB1: 3%|▎ | 1/29 [00:00<00:03, 9.24it/s]
Processing RIMKLB--AC007450.1: 3%|▎ | 1/29 [00:00<00:03, 9.24it/s]
Processing RIMKLB--AC007450.1: 7%|▋ | 2/29 [00:00<00:02, 9.47it/s]
Processing ERCC1--EXOC3L2: 7%|▋ | 2/29 [00:00<00:02, 9.47it/s]
Processing ERCC1--EXOC3L2: 10%|█ | 3/29 [00:00<00:02, 9.54it/s]
Processing NDUFA9--ACSM4: 10%|█ | 3/29 [00:00<00:02, 9.54it/s]
Processing NDUFA9--ACSM4: 14%|█▍ | 4/29 [00:00<00:02, 9.58it/s]
Processing FSIP1--AC013652.1: 14%|█▍ | 4/29 [00:00<00:02, 9.58it/s]
Processing FSIP1--AC013652.1: 17%|█▋ | 5/29 [00:00<00:02, 9.60it/s]
Processing ELAPOR1--VAV3: 17%|█▋ | 5/29 [00:00<00:02, 9.60it/s]
Processing ELAPOR1--VAV3: 21%|██ | 6/29 [00:00<00:02, 9.61it/s]
Processing DDHD2--ADAM32: 21%|██ | 6/29 [00:00<00:02, 9.61it/s]
Processing DDHD2--ADAM32: 24%|██▍ | 7/29 [00:00<00:02, 9.62it/s]
Processing PRSS27--TPSB2: 24%|██▍ | 7/29 [00:00<00:02, 9.62it/s]
Processing PRSS27--TPSB2: 28%|██▊ | 8/29 [00:00<00:02, 9.62it/s]
Processing NAGA--DGCR2: 28%|██▊ | 8/29 [00:00<00:02, 9.62it/s]
Processing NAGA--DGCR2: 31%|███ | 9/29 [00:00<00:02, 9.63it/s]
Processing SVIL--KIAA1217: 31%|███ | 9/29 [00:00<00:02, 9.63it/s]
Processing SVIL--KIAA1217: 34%|███▍ | 10/29 [00:01<00:01, 9.63it/s]
Processing TLK2P1--AC110079.1: 34%|███▍ | 10/29 [00:01<00:01, 9.63it/s]
Processing TLK2P1--AC110079.1: 38%|███▊ | 11/29 [00:01<00:01, 9.63it/s]
Processing NAGA--DGCR11: 38%|███▊ | 11/29 [00:01<00:01, 9.63it/s]
Processing NAGA--DGCR11: 41%|████▏ | 12/29 [00:01<00:01, 9.63it/s]
Processing TLK2--AC240565.1: 41%|████▏ | 12/29 [00:01<00:01, 9.63it/s]
Processing TLK2--AC240565.1: 45%|████▍ | 13/29 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 45%|████▍ | 13/29 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 48%|████▊ | 14/29 [00:01<00:01, 9.63it/s]
Processing TMEM134--GAB4: 48%|████▊ | 14/29 [00:01<00:01, 9.63it/s]
Processing TMEM134--GAB4: 52%|█████▏ | 15/29 [00:01<00:01, 9.64it/s]
Processing WAC--PLPP4: 52%|█████▏ | 15/29 [00:01<00:01, 9.64it/s]
Processing WAC--PLPP4: 55%|█████▌ | 16/29 [00:01<00:01, 9.64it/s]
Processing SGSM1--MYCL-AS1: 55%|█████▌ | 16/29 [00:01<00:01, 9.64it/s]
Processing SGSM1--MYCL-AS1: 59%|█████▊ | 17/29 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 59%|█████▊ | 17/29 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 62%|██████▏ | 18/29 [00:01<00:01, 9.64it/s]
Processing LINC01953--IKZF2: 62%|██████▏ | 18/29 [00:01<00:01, 9.64it/s]
Processing LINC01953--IKZF2: 66%|██████▌ | 19/29 [00:01<00:01, 9.64it/s]
Processing AC079610.2--IKZF2: 66%|██████▌ | 19/29 [00:01<00:01, 9.64it/s]
Processing AC079610.2--IKZF2: 69%|██████▉ | 20/29 [00:02<00:00, 9.64it/s]
Processing WAC--ZRANB1: 69%|██████▉ | 20/29 [00:02<00:00, 9.64it/s]
Processing WAC--ZRANB1: 72%|███████▏ | 21/29 [00:02<00:00, 9.64it/s]
Processing RIMKLB--LINC01252: 72%|███████▏ | 21/29 [00:02<00:00, 9.64it/s]
Processing RIMKLB--LINC01252: 76%|███████▌ | 22/29 [00:02<00:00, 9.64it/s]
Processing WAC--AL355298.1: 76%|███████▌ | 22/29 [00:02<00:00, 9.64it/s]
Processing WAC--AL355298.1: 79%|███████▉ | 23/29 [00:02<00:00, 9.64it/s]
Processing WAC--RPL21P16: 79%|███████▉ | 23/29 [00:02<00:00, 9.64it/s]
Processing WAC--RPL21P16: 83%|████████▎ | 24/29 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 83%|████████▎ | 24/29 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 86%|████████▌ | 25/29 [00:02<00:00, 9.64it/s]
Processing ERC1--ADAM2: 86%|████████▌ | 25/29 [00:02<00:00, 9.64it/s]
Processing ERC1--ADAM2: 90%|████████▉ | 26/29 [00:02<00:00, 9.64it/s]
Processing NEBL--LINC01153: 90%|████████▉ | 26/29 [00:02<00:00, 9.64it/s]
Processing NEBL--LINC01153: 93%|█████████▎| 27/29 [00:02<00:00, 9.64it/s]
Processing NEBL--RN7SKP167: 93%|█████████▎| 27/29 [00:02<00:00, 9.64it/s]
Processing NEBL--RN7SKP167: 97%|█████████▋| 28/29 [00:02<00:00, 9.64it/s]
Processing SGSM1--MYCL: 97%|█████████▋| 28/29 [00:02<00:00, 9.64it/s]
Processing SGSM1--MYCL: 100%|██████████| 29/29 [00:03<00:00, 9.64it/s]
Processing SGSM1--MYCL: 100%|██████████| 29/29 [00:03<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory