File Info
- Filename
- aih-tih-sc-3377ac-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/21353e38b53d3c7f82e9c920c0efb6/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.fusions.csv
- Size
- 7.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3377ac-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| GUCD1--UPB1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:24547908#chr22:24520387,reading-frame: out-of-frame,type: inversion,split_reads1: 119,split_reads2: 120,discordant_mates: 0,coverage1: 1392,coverage2: 703,confidence: high | position: chr22:24547908:-#chr22:24520387:+,junction_reads: 246,spanning_reads: 0,ffmp: 0.8289 | |
| RIMKLB--AC007450.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:8714041#chr12:11541526,reading-frame: out-of-frame,type: inversion,split_reads1: 121,split_reads2: 24,discordant_mates: 0,coverage1: 1745,coverage2: 34,confidence: high | position: chr12:8714041:+#chr12:11541526:-,junction_reads: 151,spanning_reads: 0,ffmp: 0.5088 | |
| ERCC1--EXOC3L2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:45416821:-#chr19:45228266:-,junction_reads: 41,spanning_reads: 1,ffmp: 0.1416 | ||
| NDUFA9--ACSM4 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:4654922#chr12:7323234,reading-frame: in-frame,type: deletion,split_reads1: 9,split_reads2: 27,discordant_mates: 1,coverage1: 2051,coverage2: 154,confidence: high | position: chr12:4654922:+#chr12:7323234:+,junction_reads: 38,spanning_reads: 2,ffmp: 0.1347 | |
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 32,split_reads2: 5,discordant_mates: 0,coverage1: 2492,coverage2: 11,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 37,spanning_reads: 0,ffmp: 0.1247 | |
| ELAPOR1--VAV3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:109173579#chr1:107779492,reading-frame: out-of-frame,type: inversion,split_reads1: 23,split_reads2: 12,discordant_mates: 1,coverage1: 1488,coverage2: 616,confidence: high | position: chr1:109173579:+#chr1:107779492:-,junction_reads: 35,spanning_reads: 1,ffmp: 0.1193 | |
| DDHD2--ADAM32 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:38260147#chr8:39221610,reading-frame: stop-codon,type: deletion,split_reads1: 13,split_reads2: 13,discordant_mates: 0,coverage1: 1056,coverage2: 650,confidence: high | position: chr8:38260147:+#chr8:39221610:+,junction_reads: 27,spanning_reads: 0,ffmp: 0.091 | |
| PRSS27--TPSB2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr16:2713529:-#chr16:1228814:-,junction_reads: 20,spanning_reads: 0,ffmp: 0.0545 | |
| NAGA--DGCR2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:42060924#chr22:19041959,reading-frame: out-of-frame,type: deletion,split_reads1: 3,split_reads2: 15,discordant_mates: 0,coverage1: 589,coverage2: 1101,confidence: high | position: chr22:42060924:-#chr22:19041959:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.0607 | |
| SVIL--KIAA1217 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr10:29657969#chr10:24380869,reading-frame: .,type: inversion,split_reads1: 4,split_reads2: 13,discordant_mates: 0,coverage1: 22,coverage2: 1374,confidence: high | position: chr10:29657969:-#chr10:24380869:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.0573 |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0459 | ||
| NAGA--DGCR11 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:42060924#chr22:19046686,reading-frame: out-of-frame,type: deletion,split_reads1: 12,split_reads2: 2,discordant_mates: 0,coverage1: 589,coverage2: 3,confidence: high | position: chr22:42060924:-#chr22:19046686:-,junction_reads: 14,spanning_reads: 0,ffmp: 0.0472 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0103 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 64,split_reads2: 68,discordant_mates: 0,coverage1: 1555,coverage2: 607,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | |
| TMEM134--GAB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:67464803:-#chr22:16970193:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | ||
| WAC--PLPP4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:28535757:+#chr10:120503818:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | ||
| SGSM1--MYCL-AS1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:24806484#chr1:39897743,reading-frame: out-of-frame,type: translocation,split_reads1: 2,split_reads2: 6,discordant_mates: 0,coverage1: 160,coverage2: 159,confidence: high | position: chr22:24806484:+#chr1:39897743:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 44,split_reads2: 34,discordant_mates: 0,coverage1: 930,coverage2: 419,confidence: high | |
| LINC01953--IKZF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213214518#chr2:213148644,reading-frame: .,type: deletion/read-through,split_reads1: 15,split_reads2: 63,discordant_mates: 0,coverage1: 225,coverage2: 3085,confidence: high | ||
| AC079610.2--IKZF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:213214518#chr2:213148644,reading-frame: .,type: deletion/read-through,split_reads1: 15,split_reads2: 63,discordant_mates: 0,coverage1: 225,coverage2: 3085,confidence: high | ||
| WAC--ZRANB1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:28535757#chr10:124962287,reading-frame: out-of-frame,type: deletion,split_reads1: 31,split_reads2: 1,discordant_mates: 1,coverage1: 2731,coverage2: 7,confidence: high | ||
| RIMKLB--LINC01252 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:8714041#chr12:11585159,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 12,split_reads2: 5,discordant_mates: 0,coverage1: 1745,coverage2: 10,confidence: high | ||
| WAC--AL355298.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:28535757#chr10:120288390,reading-frame: out-of-frame,type: deletion,split_reads1: 11,split_reads2: 5,discordant_mates: 0,coverage1: 2731,coverage2: 8,confidence: high | ||
| WAC--RPL21P16 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:28535757#chr10:120288390,reading-frame: out-of-frame,type: deletion,split_reads1: 11,split_reads2: 5,discordant_mates: 0,coverage1: 2731,coverage2: 8,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 4,split_reads2: 8,discordant_mates: 0,coverage1: 22,coverage2: 322,confidence: high | ||
| ERC1--ADAM2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:1444750#chr8:39838147,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 1374,coverage2: 20,confidence: high | ||
| NEBL--LINC01153 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:21172383#chr10:121329250,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 1695,coverage2: 1,confidence: high | ||
| NEBL--RN7SKP167 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:21172383#chr10:121329250,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 1695,coverage2: 1,confidence: high | ||
| SGSM1--MYCL | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:24806484#chr1:39897743,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 2,split_reads2: 6,discordant_mates: 0,coverage1: 160,coverage2: 159,confidence: high |
30 rows