File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/00c7590f25ca9020a519538d3e1c49/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:02:31
                             Started mapping on |	Jun 08 08:08:49
                                    Finished on |	Jun 08 08:17:19
       Mapping speed, Million of reads per hour |	373.13

                          Number of input reads |	52859459
                      Average input read length |	199
                                    UNIQUE READS:
                   Uniquely mapped reads number |	49374435
                        Uniquely mapped reads % |	93.41%
                          Average mapped length |	198.70
                       Number of splices: Total |	28527015
            Number of splices: Annotated (sjdb) |	27927633
                       Number of splices: GT/AG |	28053730
                       Number of splices: GC/AG |	212284
                       Number of splices: AT/AC |	18126
               Number of splices: Non-canonical |	242875
                      Mismatch rate per base, % |	0.45%
                         Deletion rate per base |	0.04%
                        Deletion average length |	1.95
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.64
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2392563
             % of reads mapped to multiple loci |	4.53%
        Number of reads mapped to too many loci |	494598
             % of reads mapped to too many loci |	0.94%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	455278
                 % of reads unmapped: too short |	0.86%
                Number of reads unmapped: other |	142585
                     % of reads unmapped: other |	0.27%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%