Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/7a60a6032c34cfcdc195606c0abae8/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/a8f0635560f20b28556929779154c0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/a8f0635560f20b28556929779154c0/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:33:15.906 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:33:15 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:33:15 GMT 2026] Executing as ?@nf-3ca8f0635560f20b28556929779154c0-69e42-gwhtb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:33:15 MarkDuplicates Start of doWork freeMemory: 105827808; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:33:15 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:33:15 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,635
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 2046 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,517,383
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 3951 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,785,111
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 5361 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,362,688
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 7209 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,213,435
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 8442 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,746,871
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 9840 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:16,970,644
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 11372 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:19,419,659
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 12894 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,855,319
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 14357 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,795,978
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 15685 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:26,170,104
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 17064 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,101,804
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 18747 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:29,159,461
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 20002 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:31,908,907
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 21585 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,175
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 23873 as yet unmatched pairs. 742 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,392,221
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 24899 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:39,334,707
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 26447 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:41,007,369
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 27992 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,272
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 31231 as yet unmatched pairs. 1622 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:45,013,186
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 31355 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:46,869,352
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 32523 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:54,609,374
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 34354 as yet unmatched pairs. 420 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,917
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 35811 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:90,007,460
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 37034 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:108,383,431
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 38159 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:111,765,759
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 39738 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,437
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 41224 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,547
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 42561 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:146,077,621
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 43096 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:148,120,576
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 44164 as yet unmatched pairs. 358 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:149,479,068
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 44960 as yet unmatched pairs. 450 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,303
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 46030 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:149,943,981
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 47522 as yet unmatched pairs. 1107 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:150,508,237
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 47861 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:151,002,243
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 49897 as yet unmatched pairs. 626 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,316,384
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 51712 as yet unmatched pairs. 973 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:151,693,610
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 52424 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,587
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 53903 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,241
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 55471 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,214,379
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 56573 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:156,018,281
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 58183 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,247,508
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 59814 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:158,094,741
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 61337 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:160,240,036
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 63223 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,051,400
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 64437 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,283,698
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 65963 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:166,849,962
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 67960 as yet unmatched pairs. 969 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:169,541,201
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 68879 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:171,577,572
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 70047 as yet unmatched pairs. 494 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:179,112,319
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 70984 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:183,284,739
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 72550 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:186,361,622
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 74491 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,843
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 75270 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:205,845,292
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 76918 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:219,969,078
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 78090 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,750
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 80085 as yet unmatched pairs. 780 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:229,594,942
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 81341 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:244,409,587
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 82878 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr2:3,498,922
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 84540 as yet unmatched pairs. 84210 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:15,218,899
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 86020 as yet unmatched pairs. 85687 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,041
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 94034 as yet unmatched pairs. 93694 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:24,710,967
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 89231 as yet unmatched pairs. 88883 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:27,217,460
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 90186 as yet unmatched pairs. 89838 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:28,776,868
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 92910 as yet unmatched pairs. 92559 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 129624 as yet unmatched pairs. 87876 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,402
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 620804 as yet unmatched pairs. 37000 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,446
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 670440 as yet unmatched pairs. 32431 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:42,245,570
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 670679 as yet unmatched pairs. 31244 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:45,976,520
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 668740 as yet unmatched pairs. 29296 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,132
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 667443 as yet unmatched pairs. 27991 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:61,348,471
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 665820 as yet unmatched pairs. 26363 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:69,350,129
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 664463 as yet unmatched pairs. 25004 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:71,077,626
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 664043 as yet unmatched pairs. 24580 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,130
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 663071 as yet unmatched pairs. 23602 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:74,475,290
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 660198 as yet unmatched pairs. 20727 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:85,611,565
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 659042 as yet unmatched pairs. 19568 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,591
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 657522 as yet unmatched pairs. 18046 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,656
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 656504 as yet unmatched pairs. 17027 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:106,423,460
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 654293 as yet unmatched pairs. 14812 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:110,798,658
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 653826 as yet unmatched pairs. 14343 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,296
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 652598 as yet unmatched pairs. 13110 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:131,520,133
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 651122 as yet unmatched pairs. 11629 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:159,747,851
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 649842 as yet unmatched pairs. 10335 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:177,232,392
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 648760 as yet unmatched pairs. 9240 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:197,420,539
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 647138 as yet unmatched pairs. 7600 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:207,768,561
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 645991 as yet unmatched pairs. 6446 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,661
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 644756 as yet unmatched pairs. 5207 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:222,521,802
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 643004 as yet unmatched pairs. 3454 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:233,468,543
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 641865 as yet unmatched pairs. 2285 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:241,229,554
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 640714 as yet unmatched pairs. 1126 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr3:9,743,829
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 638861 as yet unmatched pairs. 40562 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr3:12,416,807
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 637410 as yet unmatched pairs. 39109 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:15,023,311
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 635871 as yet unmatched pairs. 37564 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:25,615,562
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 634985 as yet unmatched pairs. 36674 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:32,570,885
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 633076 as yet unmatched pairs. 34761 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr3:38,140,509
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 632140 as yet unmatched pairs. 33825 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:42,160,453
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 631624 as yet unmatched pairs. 33304 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:44,642,933
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 628672 as yet unmatched pairs. 30352 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr3:47,004,130
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 627349 as yet unmatched pairs. 29027 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:47,818,054
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 625695 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:48,501,217
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 625088 as yet unmatched pairs. 26757 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:49,015,044
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 622722 as yet unmatched pairs. 24389 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:49,804,324
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 620818 as yet unmatched pairs. 22482 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:51,937,678
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 619344 as yet unmatched pairs. 20998 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:52,706,156
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 617886 as yet unmatched pairs. 19532 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,621
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 616758 as yet unmatched pairs. 18400 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:98,593,067
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 615365 as yet unmatched pairs. 16999 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:113,885,907
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 614024 as yet unmatched pairs. 15657 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr3:123,618,652
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 612881 as yet unmatched pairs. 14512 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:127,605,122
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 611307 as yet unmatched pairs. 12931 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:129,437,071
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 609740 as yet unmatched pairs. 11361 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,229
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 608601 as yet unmatched pairs. 10217 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:150,546,093
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 606992 as yet unmatched pairs. 8597 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:169,483,691
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 605220 as yet unmatched pairs. 6808 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:183,064,598
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 604152 as yet unmatched pairs. 5729 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,984
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 602625 as yet unmatched pairs. 4202 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:188,760,240
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 601483 as yet unmatched pairs. 3055 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:195,864,138
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 601026 as yet unmatched pairs. 2585 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr4:444,313
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 598472 as yet unmatched pairs. 19582 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr4:1,728,489
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 597128 as yet unmatched pairs. 18237 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:2,693,612
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 595210 as yet unmatched pairs. 16291 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:6,716,712
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 593315 as yet unmatched pairs. 14395 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:13,600,159
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 592304 as yet unmatched pairs. 13377 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr4:39,218,080
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 590703 as yet unmatched pairs. 11769 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr4:54,263,830
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 589528 as yet unmatched pairs. 10589 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,475
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 588431 as yet unmatched pairs. 9485 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:82,428,152
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 587188 as yet unmatched pairs. 8233 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:87,134,474
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 586267 as yet unmatched pairs. 7309 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:106,324,991
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 584349 as yet unmatched pairs. 5387 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,678
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 582921 as yet unmatched pairs. 3952 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:150,256,087
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 581504 as yet unmatched pairs. 2528 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:174,262,950
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 580137 as yet unmatched pairs. 1158 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:453,788
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 578914 as yet unmatched pairs. 21602 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr5:10,407,127
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 577446 as yet unmatched pairs. 20120 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:32,048,576
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 575673 as yet unmatched pairs. 18345 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr5:43,535,622
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 574467 as yet unmatched pairs. 17137 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr5:67,166,421
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 573615 as yet unmatched pairs. 16281 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:78,015,500
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 572036 as yet unmatched pairs. 14700 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr5:96,767,452
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 570959 as yet unmatched pairs. 13612 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr5:128,392,069
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 569407 as yet unmatched pairs. 12041 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,285
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 567990 as yet unmatched pairs. 10611 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,864
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 566500 as yet unmatched pairs. 9060 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,559
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 565407 as yet unmatched pairs. 7966 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,403
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 563805 as yet unmatched pairs. 6363 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:157,743,954
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 562293 as yet unmatched pairs. 4850 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:175,492,246
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 561253 as yet unmatched pairs. 3805 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:178,712,647
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 559664 as yet unmatched pairs. 2214 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:179,865,281
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 558242 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr6:2,766,114
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 556362 as yet unmatched pairs. 33733 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:10,723,221
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 554423 as yet unmatched pairs. 31787 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr6:20,490,221
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 553050 as yet unmatched pairs. 30402 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr6:26,183,930
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 551106 as yet unmatched pairs. 28443 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr6:29,888,675
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 549699 as yet unmatched pairs. 27036 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,385
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 548635 as yet unmatched pairs. 25970 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,623,831
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 547632 as yet unmatched pairs. 24961 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,230
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 545717 as yet unmatched pairs. 23046 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,119,088
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 544821 as yet unmatched pairs. 22148 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,439
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 543507 as yet unmatched pairs. 20834 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:35,086,972
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 542803 as yet unmatched pairs. 20128 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr6:41,771,298
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 539995 as yet unmatched pairs. 17318 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr6:43,432,628
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 538629 as yet unmatched pairs. 15950 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:47,234,770
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 537490 as yet unmatched pairs. 14809 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr6:56,459,039
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 535817 as yet unmatched pairs. 13135 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr6:79,017,465
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 534650 as yet unmatched pairs. 11965 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr6:99,408,230
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 533196 as yet unmatched pairs. 10509 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:111,259,663
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 531881 as yet unmatched pairs. 9187 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:125,220,150
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 529959 as yet unmatched pairs. 7251 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,618
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 529020 as yet unmatched pairs. 6292 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,954
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 527664 as yet unmatched pairs. 4935 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:156,829,266
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 526058 as yet unmatched pairs. 3325 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,097
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 525502 as yet unmatched pairs. 2767 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:170,535,346
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 523033 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr7:2,647,477
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 521265 as yet unmatched pairs. 34918 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,394,487
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 519529 as yet unmatched pairs. 33177 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr7:6,652,486
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 518266 as yet unmatched pairs. 31912 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr7:23,507,460
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 516771 as yet unmatched pairs. 30407 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr7:39,013,547
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 515020 as yet unmatched pairs. 28655 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,798
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 514533 as yet unmatched pairs. 28158 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:55,165,286
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 511803 as yet unmatched pairs. 25424 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:72,868,862
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 510267 as yet unmatched pairs. 23883 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:73,508,362
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 510001 as yet unmatched pairs. 23616 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:75,108,988
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 508500 as yet unmatched pairs. 22113 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:76,057,466
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 507774 as yet unmatched pairs. 21378 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr7:76,990,270
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 506608 as yet unmatched pairs. 20205 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:92,062,400
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 505215 as yet unmatched pairs. 18811 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr7:98,961,329
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 503773 as yet unmatched pairs. 17367 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,156,910
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 502367 as yet unmatched pairs. 15960 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,574
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 500807 as yet unmatched pairs. 14394 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:102,433,648
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 499248 as yet unmatched pairs. 12834 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,978
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 499291 as yet unmatched pairs. 12876 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:116,783,435
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 497623 as yet unmatched pairs. 11205 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr7:128,769,066
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 496180 as yet unmatched pairs. 9762 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:137,251,251
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 497201 as yet unmatched pairs. 10775 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,242
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 494091 as yet unmatched pairs. 7664 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:141,074,447
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 492000 as yet unmatched pairs. 5573 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr7:144,362,973
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 491281 as yet unmatched pairs. 4852 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,618
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 489709 as yet unmatched pairs. 3274 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr7:152,182,047
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 487688 as yet unmatched pairs. 1248 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr8:8,702,749
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 486473 as yet unmatched pairs. 33170 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr8:18,872,322
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 484998 as yet unmatched pairs. 31694 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr8:23,368,271
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 483255 as yet unmatched pairs. 29949 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:32,742,668
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 481924 as yet unmatched pairs. 28615 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr8:38,105,606
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 480136 as yet unmatched pairs. 26824 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,348,063
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 479484 as yet unmatched pairs. 26170 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,597
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 479741 as yet unmatched pairs. 26424 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,144
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 476215 as yet unmatched pairs. 22897 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr8:48,043,107
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 474748 as yet unmatched pairs. 21425 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr8:67,257,756
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 473609 as yet unmatched pairs. 20282 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:85,397,300
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 472279 as yet unmatched pairs. 18952 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr8:99,875,561
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 470946 as yet unmatched pairs. 17616 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,420
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 473090 as yet unmatched pairs. 19758 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:119,791,386
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 468325 as yet unmatched pairs. 14986 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr8:135,548,828
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 466951 as yet unmatched pairs. 13611 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,559,822
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 465244 as yet unmatched pairs. 11903 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,808,778
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 463331 as yet unmatched pairs. 9980 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,718
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 462880 as yet unmatched pairs. 9529 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,487
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 461798 as yet unmatched pairs. 8443 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,117
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 465118 as yet unmatched pairs. 11763 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,828
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 461711 as yet unmatched pairs. 8356 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,154
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 460553 as yet unmatched pairs. 7198 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,563
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 457940 as yet unmatched pairs. 4577 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,274
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 456096 as yet unmatched pairs. 2733 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr8:144,524,470
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 453978 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:5,801,302
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 452520 as yet unmatched pairs. 26491 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr9:26,917,121
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 451080 as yet unmatched pairs. 25035 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,171
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 450153 as yet unmatched pairs. 24103 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:37,800,985
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 448397 as yet unmatched pairs. 22315 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:77,280,180
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 447151 as yet unmatched pairs. 21066 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:87,707,130
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 446388 as yet unmatched pairs. 20293 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr9:93,516,121
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 444393 as yet unmatched pairs. 18298 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr9:100,297,983
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 442735 as yet unmatched pairs. 16635 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr9:112,157,570
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 441584 as yet unmatched pairs. 15479 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr9:120,923,723
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 439917 as yet unmatched pairs. 13811 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,629
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 438523 as yet unmatched pairs. 12412 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr9:128,260,668
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 437129 as yet unmatched pairs. 11014 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr9:129,008,716
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 438562 as yet unmatched pairs. 12445 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,792
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 434682 as yet unmatched pairs. 8564 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr9:132,902,636
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 432642 as yet unmatched pairs. 6522 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr9:134,417,217
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 431579 as yet unmatched pairs. 5447 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr9:136,502,070
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 429243 as yet unmatched pairs. 3110 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr9:137,215,947
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 427403 as yet unmatched pairs. 1267 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr10:3,134,488
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 425739 as yet unmatched pairs. 21820 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:8,058,359
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 425848 as yet unmatched pairs. 21927 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr10:21,725,487
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 423138 as yet unmatched pairs. 19214 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr10:29,554,806
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 422055 as yet unmatched pairs. 18130 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr10:43,386,826
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 420935 as yet unmatched pairs. 17009 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr10:47,762,602
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 419716 as yet unmatched pairs. 15790 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr10:67,990,990
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 418620 as yet unmatched pairs. 14685 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr10:71,752,977
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 417362 as yet unmatched pairs. 13422 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr10:75,029,462
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 415755 as yet unmatched pairs. 11811 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr10:80,169,054
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 414458 as yet unmatched pairs. 10508 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr10:87,230,980
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 413002 as yet unmatched pairs. 9050 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 72s. Last read position: chr10:95,238,032
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 411948 as yet unmatched pairs. 7996 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr10:100,529,439
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 410401 as yet unmatched pairs. 6447 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr10:102,744,020
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 408703 as yet unmatched pairs. 4745 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr10:114,843,700
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 407328 as yet unmatched pairs. 3365 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr10:124,682,230
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 406003 as yet unmatched pairs. 2032 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr10:133,289,843
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 404415 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr11:614,865
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 402733 as yet unmatched pairs. 41763 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,835,416
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 401452 as yet unmatched pairs. 40471 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr11:6,601,533
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 399190 as yet unmatched pairs. 38200 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr11:10,802,295
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 398016 as yet unmatched pairs. 37019 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr11:27,472,692
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 396378 as yet unmatched pairs. 35377 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr11:46,381,734
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 395451 as yet unmatched pairs. 34447 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,310,320
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 394179 as yet unmatched pairs. 33175 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:59,182,329
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 392548 as yet unmatched pairs. 31544 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr11:61,416,109
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 390651 as yet unmatched pairs. 29639 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,750
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 390028 as yet unmatched pairs. 29016 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,888,582
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 388301 as yet unmatched pairs. 27287 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr11:64,317,294
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 386146 as yet unmatched pairs. 25131 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr11:65,111,383
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 384426 as yet unmatched pairs. 23408 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,080
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 382619 as yet unmatched pairs. 21596 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,780,074
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 380879 as yet unmatched pairs. 19853 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr11:66,616,822
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 379737 as yet unmatched pairs. 18710 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr11:67,395,941
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 377767 as yet unmatched pairs. 16739 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr11:68,416,371
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 375846 as yet unmatched pairs. 14818 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,936
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 375095 as yet unmatched pairs. 14061 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr11:73,296,565
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 373066 as yet unmatched pairs. 12031 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr11:77,084,931
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 371866 as yet unmatched pairs. 10830 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr11:92,844,279
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 370503 as yet unmatched pairs. 9467 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr11:102,527,559
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 368450 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr11:117,397,260
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 367029 as yet unmatched pairs. 5981 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr11:118,956,884
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 369110 as yet unmatched pairs. 8052 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,806
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 365712 as yet unmatched pairs. 4654 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr11:124,767,485
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 363103 as yet unmatched pairs. 2045 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr11:130,141,544
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 362125 as yet unmatched pairs. 1063 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr12:2,803,164
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 360527 as yet unmatched pairs. 33454 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr12:6,573,203
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 359155 as yet unmatched pairs. 32080 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr12:6,956,507
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 357596 as yet unmatched pairs. 30519 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,028
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 356706 as yet unmatched pairs. 29628 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr12:21,638,430
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 355077 as yet unmatched pairs. 27992 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr12:45,924,855
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 353774 as yet unmatched pairs. 26688 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr12:49,040,435
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 352552 as yet unmatched pairs. 25462 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr12:49,759,233
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 351443 as yet unmatched pairs. 24353 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr12:52,245,581
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 351155 as yet unmatched pairs. 24063 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr12:53,383,204
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 347957 as yet unmatched pairs. 20864 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr12:55,413,879
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 346756 as yet unmatched pairs. 19661 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr12:56,164,321
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 346172 as yet unmatched pairs. 19076 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,194
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 344368 as yet unmatched pairs. 17270 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,878
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 343231 as yet unmatched pairs. 16133 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr12:66,153,402
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 341736 as yet unmatched pairs. 14637 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr12:82,756,539
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 340420 as yet unmatched pairs. 13320 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr12:101,697,963
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 339120 as yet unmatched pairs. 12018 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr12:110,327,582
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 337789 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr12:112,941,632
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 336685 as yet unmatched pairs. 9570 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,167
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 334483 as yet unmatched pairs. 7367 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,827
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 333781 as yet unmatched pairs. 6660 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr12:122,702,286
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 331615 as yet unmatched pairs. 4487 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr12:124,993,992
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 330170 as yet unmatched pairs. 3037 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr12:132,582,059
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 328917 as yet unmatched pairs. 1782 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr13:20,059,445
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 327447 as yet unmatched pairs. 7886 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr13:33,053,899
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 325582 as yet unmatched pairs. 6019 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr13:54,408,886
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 324170 as yet unmatched pairs. 4602 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr13:98,143,393
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 322925 as yet unmatched pairs. 3352 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr13:109,783,822
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 321157 as yet unmatched pairs. 1583 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr13:113,823,382
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 319724 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr14:21,523,628
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 318423 as yet unmatched pairs. 16499 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr14:23,557,218
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 316903 as yet unmatched pairs. 14979 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,290
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 315474 as yet unmatched pairs. 13549 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,585,969
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 314025 as yet unmatched pairs. 12093 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr14:55,636,446
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 312681 as yet unmatched pairs. 10743 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr14:65,077,974
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 311410 as yet unmatched pairs. 9469 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr14:73,284,165
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 310095 as yet unmatched pairs. 8151 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr14:77,025,739
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 309196 as yet unmatched pairs. 7251 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr14:92,116,196
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 307346 as yet unmatched pairs. 5397 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr14:102,008,327
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 305725 as yet unmatched pairs. 3755 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr14:103,492,024
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 304140 as yet unmatched pairs. 2168 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,379,745
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 302506 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr15:29,716,701
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 301277 as yet unmatched pairs. 14780 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr15:40,036,989
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 300042 as yet unmatched pairs. 13540 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr15:41,835,087
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 299036 as yet unmatched pairs. 12533 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr15:43,809,771
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 297148 as yet unmatched pairs. 10644 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr15:57,063,805
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 296038 as yet unmatched pairs. 9530 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,123
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 294707 as yet unmatched pairs. 8199 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,156
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 293059 as yet unmatched pairs. 6547 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr15:75,048,283
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 291594 as yet unmatched pairs. 5081 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr15:78,922,086
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 290505 as yet unmatched pairs. 3991 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr15:85,194,870
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 288754 as yet unmatched pairs. 2235 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr15:90,948,664
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 287524 as yet unmatched pairs. 1004 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr16:502,959
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 286013 as yet unmatched pairs. 47763 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr16:1,592,180
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 284073 as yet unmatched pairs. 45821 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr16:2,135,510
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 282220 as yet unmatched pairs. 43968 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,570
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 281338 as yet unmatched pairs. 43085 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr16:4,341,387
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 279061 as yet unmatched pairs. 40808 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr16:8,902,107
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 278120 as yet unmatched pairs. 39867 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,779
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 277010 as yet unmatched pairs. 38755 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr16:14,921,313
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 275571 as yet unmatched pairs. 37313 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,342
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 274703 as yet unmatched pairs. 36444 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,323,172
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 273668 as yet unmatched pairs. 35409 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,230
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 272952 as yet unmatched pairs. 34692 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,401,603
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 272939 as yet unmatched pairs. 34678 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr16:19,537,076
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 271182 as yet unmatched pairs. 32921 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,030
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 270667 as yet unmatched pairs. 32406 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,967
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 269938 as yet unmatched pairs. 31675 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr16:22,485,948
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 269257 as yet unmatched pairs. 30993 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,284
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 269108 as yet unmatched pairs. 30844 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr16:23,687,549
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 267951 as yet unmatched pairs. 29686 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,403,529
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 266704 as yet unmatched pairs. 28437 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr16:28,843,736
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 265682 as yet unmatched pairs. 27415 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,002
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 265604 as yet unmatched pairs. 27337 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,541,603
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 264194 as yet unmatched pairs. 25927 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,348
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 264456 as yet unmatched pairs. 26189 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr16:29,861,275
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 261534 as yet unmatched pairs. 23266 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,233
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 259275 as yet unmatched pairs. 21006 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,624
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 257216 as yet unmatched pairs. 18947 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,040
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 256661 as yet unmatched pairs. 18392 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr16:31,076,383
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 254853 as yet unmatched pairs. 16581 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr16:47,155,645
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 253442 as yet unmatched pairs. 15170 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr16:57,154,463
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 252242 as yet unmatched pairs. 13967 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr16:66,742,570
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 250511 as yet unmatched pairs. 12236 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr16:67,930,933
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 248789 as yet unmatched pairs. 10514 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr16:69,447,184
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 247497 as yet unmatched pairs. 9220 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr16:70,664,667
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 246747 as yet unmatched pairs. 8470 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr16:72,798,427
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 244839 as yet unmatched pairs. 6561 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr16:75,656,492
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 243305 as yet unmatched pairs. 5025 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr16:85,710,150
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 241762 as yet unmatched pairs. 3480 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr16:89,290,740
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 240001 as yet unmatched pairs. 1713 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr17:710,583
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 238268 as yet unmatched pairs. 64677 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr17:1,683,569
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 236992 as yet unmatched pairs. 63395 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr17:3,885,578
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 235109 as yet unmatched pairs. 61510 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr17:5,000,283
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 233663 as yet unmatched pairs. 60064 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,601
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 232636 as yet unmatched pairs. 59026 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,659
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 231470 as yet unmatched pairs. 57860 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,898,530
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 229798 as yet unmatched pairs. 56187 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:15,704,263
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 227901 as yet unmatched pairs. 54289 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr17:17,816,608
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 226588 as yet unmatched pairs. 52974 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr17:27,311,559
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 225423 as yet unmatched pairs. 51809 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,018
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 223820 as yet unmatched pairs. 50206 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr17:30,481,244
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 222279 as yet unmatched pairs. 48664 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr17:35,422,484
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 220735 as yet unmatched pairs. 47111 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:36,496,340
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 219808 as yet unmatched pairs. 46184 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,333
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 218898 as yet unmatched pairs. 45274 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr17:38,673,900
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 217624 as yet unmatched pairs. 43998 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr17:39,662,282
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 216052 as yet unmatched pairs. 42426 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,341
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 219372 as yet unmatched pairs. 45746 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,337
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 219621 as yet unmatched pairs. 45995 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,576
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 216240 as yet unmatched pairs. 42614 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:40,096,381
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 209695 as yet unmatched pairs. 36066 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr17:40,880,756
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 208501 as yet unmatched pairs. 34870 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr17:41,878,134
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 206926 as yet unmatched pairs. 33294 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:42,775,451
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 205051 as yet unmatched pairs. 31419 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:44,320,050
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 203860 as yet unmatched pairs. 30228 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr17:45,396,270
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 202210 as yet unmatched pairs. 28569 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:47,601,660
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 200972 as yet unmatched pairs. 27331 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,141,345
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 199457 as yet unmatched pairs. 25816 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,462,492
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 197798 as yet unmatched pairs. 24154 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr17:56,978,184
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 196270 as yet unmatched pairs. 22626 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr17:59,681,355
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 195804 as yet unmatched pairs. 22152 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr17:62,031,514
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 193432 as yet unmatched pairs. 19780 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr17:64,504,274
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 191752 as yet unmatched pairs. 18100 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr17:68,523,745
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 191558 as yet unmatched pairs. 17906 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr17:75,233,081
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 188830 as yet unmatched pairs. 15172 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr17:75,750,249
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 187448 as yet unmatched pairs. 13790 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr17:76,008,385
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 186242 as yet unmatched pairs. 12584 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr17:76,270,329
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 184783 as yet unmatched pairs. 11125 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr17:78,870,898
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 182073 as yet unmatched pairs. 8410 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,340,276
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 180768 as yet unmatched pairs. 7102 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr17:81,512,253
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 179488 as yet unmatched pairs. 5822 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr17:81,909,311
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 177410 as yet unmatched pairs. 3744 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr17:82,088,530
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 175774 as yet unmatched pairs. 2108 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr18:214,653
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 173879 as yet unmatched pairs. 9756 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr18:8,706,326
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 172569 as yet unmatched pairs. 8439 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr18:20,984,410
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 170806 as yet unmatched pairs. 6675 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr18:36,124,677
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 169721 as yet unmatched pairs. 5589 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr18:49,929,512
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 168487 as yet unmatched pairs. 4354 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr18:58,335,473
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 166908 as yet unmatched pairs. 2775 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr18:74,513,577
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 164990 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr19:808,691
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 163653 as yet unmatched pairs. 69763 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,360,888
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 161488 as yet unmatched pairs. 67598 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,264
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 159850 as yet unmatched pairs. 65959 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr19:2,639,745
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 157478 as yet unmatched pairs. 63587 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr19:4,117,520
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 156188 as yet unmatched pairs. 62296 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr19:5,119,831
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 153977 as yet unmatched pairs. 60085 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr19:6,222,626
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 152166 as yet unmatched pairs. 58273 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr19:7,617,649
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 150593 as yet unmatched pairs. 56700 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr19:9,980,680
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 148696 as yet unmatched pairs. 54802 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,678,652
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 147755 as yet unmatched pairs. 53860 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr19:11,204,205
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 145827 as yet unmatched pairs. 51932 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr19:12,719,138
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 144585 as yet unmatched pairs. 50690 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:13,906,382
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 142899 as yet unmatched pairs. 49004 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr19:14,565,794
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 140926 as yet unmatched pairs. 47031 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,308
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 139776 as yet unmatched pairs. 45881 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr19:16,198,032
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 137683 as yet unmatched pairs. 43785 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr19:17,301,019
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 135640 as yet unmatched pairs. 41741 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,179
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 134195 as yet unmatched pairs. 40292 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr19:19,194,094
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 132356 as yet unmatched pairs. 38453 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr19:29,208,081
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 131132 as yet unmatched pairs. 37223 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr19:34,341,996
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 129273 as yet unmatched pairs. 35364 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,822
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 127662 as yet unmatched pairs. 33753 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,662
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 127512 as yet unmatched pairs. 33602 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr19:36,140,045
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 123026 as yet unmatched pairs. 29116 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr19:38,387,054
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 121768 as yet unmatched pairs. 27858 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr19:39,386,068
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 120498 as yet unmatched pairs. 26588 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr19:40,272,804
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 118696 as yet unmatched pairs. 24778 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,895,475
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 117237 as yet unmatched pairs. 23318 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,118
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 116380 as yet unmatched pairs. 22461 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr19:44,266,855
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 113884 as yet unmatched pairs. 19957 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr19:45,348,796
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 111973 as yet unmatched pairs. 18046 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr19:45,901,564
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 110225 as yet unmatched pairs. 16298 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr19:47,694,463
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 108574 as yet unmatched pairs. 14646 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr19:48,799,791
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 107935 as yet unmatched pairs. 14007 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr19:49,489,854
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 106424 as yet unmatched pairs. 12496 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,792,994
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 103806 as yet unmatched pairs. 9873 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr19:50,309,165
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 102148 as yet unmatched pairs. 8215 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr19:53,398,014
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 100263 as yet unmatched pairs. 6329 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr19:54,970,003
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 99396 as yet unmatched pairs. 5462 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,616,583
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 96966 as yet unmatched pairs. 3032 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr19:57,859,408
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 95829 as yet unmatched pairs. 1895 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr20:396,260
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 93815 as yet unmatched pairs. 21036 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr20:3,471,055
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 92264 as yet unmatched pairs. 19485 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,769
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 90686 as yet unmatched pairs. 17901 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr20:25,217,564
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 89359 as yet unmatched pairs. 16574 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr20:32,762,665
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 87674 as yet unmatched pairs. 14888 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr20:35,280,684
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 86151 as yet unmatched pairs. 13365 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,346
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 85022 as yet unmatched pairs. 12235 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,014
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 83040 as yet unmatched pairs. 10252 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,369
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 83604 as yet unmatched pairs. 10814 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr20:48,745,069
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 80177 as yet unmatched pairs. 7387 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,473
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 78914 as yet unmatched pairs. 6124 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr20:62,139,895
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 77538 as yet unmatched pairs. 4747 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,121
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 76115 as yet unmatched pairs. 3323 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr20:63,708,779
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 73763 as yet unmatched pairs. 970 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,351
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 72502 as yet unmatched pairs. 16034 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,749
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 71310 as yet unmatched pairs. 14842 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,905
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 70528 as yet unmatched pairs. 14057 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,219
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 70469 as yet unmatched pairs. 13998 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 69805 as yet unmatched pairs. 13332 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,932
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 69076 as yet unmatched pairs. 12600 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,014
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 67793 as yet unmatched pairs. 11317 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr21:14,966,961
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 66544 as yet unmatched pairs. 10065 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr21:32,762,122
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 65144 as yet unmatched pairs. 8665 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr21:34,792,524
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 63336 as yet unmatched pairs. 6857 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr21:41,245,967
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 61662 as yet unmatched pairs. 5183 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr21:42,733,413
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 59984 as yet unmatched pairs. 3505 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,726
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 59081 as yet unmatched pairs. 2602 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr21:46,391,308
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 56961 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr22:19,963,624
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 55613 as yet unmatched pairs. 19264 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr22:21,970,325
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 53747 as yet unmatched pairs. 17397 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr22:25,039,889
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 52053 as yet unmatched pairs. 15702 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,622
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 52273 as yet unmatched pairs. 15922 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr22:31,125,842
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 49039 as yet unmatched pairs. 12688 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,309
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 47860 as yet unmatched pairs. 11509 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr22:37,724,775
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 46178 as yet unmatched pairs. 9827 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr22:38,699,911
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 44411 as yet unmatched pairs. 8056 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr22:40,857,113
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 42984 as yet unmatched pairs. 6629 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,151
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 41766 as yet unmatched pairs. 5411 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr22:45,550,510
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 40873 as yet unmatched pairs. 4518 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 126s. Last read position: chr22:50,278,616
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 38911 as yet unmatched pairs. 2555 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr22:50,731,054
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 36508 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chrX:8,466,267
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 34872 as yet unmatched pairs. 16323 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,006
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 33968 as yet unmatched pairs. 15407 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chrX:43,711,917
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 32526 as yet unmatched pairs. 13964 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chrX:48,698,939
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 31002 as yet unmatched pairs. 12440 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chrX:52,192,102
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 29586 as yet unmatched pairs. 11024 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chrX:53,580,985
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 28511 as yet unmatched pairs. 9949 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chrX:69,616,619
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 26840 as yet unmatched pairs. 8277 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chrX:74,592,741
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 25436 as yet unmatched pairs. 6873 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,207
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 24279 as yet unmatched pairs. 5716 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chrX:119,930,106
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 22885 as yet unmatched pairs. 4322 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chrX:147,921,969
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 21874 as yet unmatched pairs. 3310 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chrX:153,956,719
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 20617 as yet unmatched pairs. 2050 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chrX:155,051,702
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 18716 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,151
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 18301 as yet unmatched pairs. 4273 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,551
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 14236 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,121
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 14239 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,460
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 14151 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,737
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 13960 as yet unmatched pairs. 13936 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,041
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 4123 as yet unmatched pairs. 4099 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: KI270733.1:168,888
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 726 as yet unmatched pairs. 702 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,099
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 112 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,721
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 30 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 531130917 records. 0 pairs never matched.
INFO 2026-06-08 08:51:31 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137624; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:51:31 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:51:35 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:51:35 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,964
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,362
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,734
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1429
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,914
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1712
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,563
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 2119
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,420
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,999
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,273
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,065
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,944
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,999
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,518
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,795
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1485
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,972
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,095
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,852
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1651
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,779
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,339
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,710
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,694
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,730
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,020
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,375
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,422
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,023
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,314
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1607
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,395
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1510
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,453
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1572
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,343
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1923
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,011
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,096
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,345
INFO 2026-06-08 08:52:51 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 08:52:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,005
INFO 2026-06-08 08:52:52 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:52:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,330
INFO 2026-06-08 08:52:52 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:52:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:53:42 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:53:44 MarkDuplicates After generateDuplicateIndexes freeMemory: 203985608; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:53:44 MarkDuplicates Marking 298062371 records as duplicates.
INFO 2026-06-08 08:53:44 MarkDuplicates Found 11829829 optical duplicate clusters.
INFO 2026-06-08 08:53:44 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:54:00 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:23,795,978
INFO 2026-06-08 08:54:18 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 17s. Last read position: chr1:45,013,186
INFO 2026-06-08 08:54:34 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:148,120,576
INFO 2026-06-08 08:54:50 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 15s. Last read position: chr1:155,214,379
INFO 2026-06-08 08:55:07 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 17s. Last read position: chr1:179,112,319
INFO 2026-06-08 08:55:26 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 18s. Last read position: chr2:15,218,899
INFO 2026-06-08 08:55:44 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 18s. Last read position: chr2:54,649,132
INFO 2026-06-08 08:56:02 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 17s. Last read position: chr2:110,798,658
INFO 2026-06-08 08:56:19 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 16s. Last read position: chr2:241,229,554
INFO 2026-06-08 08:56:35 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 16s. Last read position: chr3:47,818,054
INFO 2026-06-08 08:56:52 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 16s. Last read position: chr3:127,605,122
INFO 2026-06-08 08:57:08 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 16s. Last read position: chr4:1,728,489
INFO 2026-06-08 08:57:25 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 16s. Last read position: chr4:128,287,678
INFO 2026-06-08 08:57:41 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 16s. Last read position: chr5:128,392,069
INFO 2026-06-08 08:57:57 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr6:10,723,221
INFO 2026-06-08 08:58:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:31s. Time for last 10,000,000: 18s. Last read position: chr6:41,771,298
INFO 2026-06-08 08:58:35 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 19s. Last read position: chr6:156,829,266
INFO 2026-06-08 08:58:53 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 18s. Last read position: chr7:72,868,862
INFO 2026-06-08 08:59:12 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:28s. Time for last 10,000,000: 19s. Last read position: chr7:102,659,978
INFO 2026-06-08 08:59:32 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:48s. Time for last 10,000,000: 19s. Last read position: chr8:18,872,322
INFO 2026-06-08 08:59:53 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 20s. Last read position: chr8:99,875,561
INFO 2026-06-08 09:00:14 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:30s. Time for last 10,000,000: 21s. Last read position: chr8:143,867,154
INFO 2026-06-08 09:00:36 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 21s. Last read position: chr9:93,516,121
INFO 2026-06-08 09:00:57 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 20s. Last read position: chr9:136,502,070
INFO 2026-06-08 09:01:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 19s. Last read position: chr10:75,029,462
INFO 2026-06-08 09:01:36 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 19s. Last read position: chr11:1,835,416
INFO 2026-06-08 09:01:54 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 18s. Last read position: chr11:64,317,294
INFO 2026-06-08 09:02:14 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 19s. Last read position: chr11:92,844,279
INFO 2026-06-08 09:02:34 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 19s. Last read position: chr12:10,723,028
INFO 2026-06-08 09:02:54 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:10s. Time for last 10,000,000: 19s. Last read position: chr12:57,254,878
INFO 2026-06-08 09:03:13 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 18s. Last read position: chr12:132,582,059
INFO 2026-06-08 09:03:32 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 19s. Last read position: chr14:49,585,969
INFO 2026-06-08 09:03:51 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 19s. Last read position: chr15:40,036,989
INFO 2026-06-08 09:04:09 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 17s. Last read position: chr16:502,959
INFO 2026-06-08 09:04:28 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 18s. Last read position: chr16:18,318,230
INFO 2026-06-08 09:04:45 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 17s. Last read position: chr16:29,384,002
INFO 2026-06-08 09:05:02 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:18s. Time for last 10,000,000: 16s. Last read position: chr16:66,742,570
INFO 2026-06-08 09:05:18 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 16s. Last read position: chr17:3,885,578
INFO 2026-06-08 09:05:36 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:51s. Time for last 10,000,000: 17s. Last read position: chr17:35,422,484
INFO 2026-06-08 09:05:53 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 16s. Last read position: chr17:41,878,134
INFO 2026-06-08 09:06:10 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 17s. Last read position: chr17:64,504,274
INFO 2026-06-08 09:06:28 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 18s. Last read position: chr17:82,088,530
INFO 2026-06-08 09:06:47 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 19s. Last read position: chr19:1,881,264
INFO 2026-06-08 09:07:06 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 18s. Last read position: chr19:13,906,382
INFO 2026-06-08 09:07:24 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 18s. Last read position: chr19:35,720,662
INFO 2026-06-08 09:07:42 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 17s. Last read position: chr19:47,694,463
INFO 2026-06-08 09:08:00 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 17s. Last read position: chr20:3,471,055
INFO 2026-06-08 09:08:18 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 18s. Last read position: chr20:62,139,895
INFO 2026-06-08 09:08:34 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 15s. Last read position: chr21:14,966,961
INFO 2026-06-08 09:08:51 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:07s. Time for last 10,000,000: 17s. Last read position: chr22:29,299,622
INFO 2026-06-08 09:09:08 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 17s. Last read position: chrX:8,466,267
INFO 2026-06-08 09:09:24 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:40s. Time for last 10,000,000: 16s. Last read position: chrX:147,921,969
INFO 2026-06-08 09:09:39 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 15s. Last read position: KI270733.1:176,099
INFO 2026-06-08 09:09:48 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:09:48 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:09:48 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:09:48 MarkDuplicates Before output close freeMemory: 203943776; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:09:48 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:09:48 MarkDuplicates After output close freeMemory: 104189360; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:09:48 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 36.55 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory