Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/98e082f27cd2c645140863f7479a24/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b5f3fa08bef1b89b95df09ee0506ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b5f3fa08bef1b89b95df09ee0506ea/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 520000000 records
paired = 258562114
unpaired = 3619350
MERGED PAIRED END READS = 258562114
MATES PROCESSED = 520743578
TOTAL READS     = 262181464
DISTINCT READS  = 1.27454e+08
DISTINCT COUNTS = 837
MAX COUNT       = 623263
COUNTS OF 1     = 7.05834e+07
MAX TERMS       = 100
OBSERVED COUNTS (623264)
1	70583397
2	29646563
3	13072388
4	6074824
5	3029929
6	1633821
7	954804
8	597829
9	398908
10	278769
11	203574
12	153462
13	118691
14	93303
15	75472
16	62376
17	51150
18	43600
19	37052
20	31681
21	27227
22	23780
23	20762
24	18179
25	16441
26	14524
27	12781
28	11729
29	10559
30	9528
31	8529
32	7901
33	7154
34	6605
35	5930
36	5640
37	5088
38	4853
39	4481
40	4247
41	3736
42	3561
43	3312
44	3217
45	2934
46	2854
47	2714
48	2430
49	2375
50	2199
51	2073
52	1926
53	1827
54	1739
55	1690
56	1553
57	1504
58	1549
59	1368
60	1324
61	1235
62	1151
63	1104
64	1125
65	1046
66	960
67	950
68	918
69	923
70	856
71	811
72	737
73	731
74	730
75	679
76	648
77	611
78	586
79	562
80	577
81	532
82	574
83	521
84	552
85	488
86	469
87	447
88	474
89	414
90	373
91	379
92	380
93	349
94	360
95	337
96	331
97	321
98	283
99	350
100	310
101	298
102	288
103	290
104	255
105	267
106	259
107	220
108	230
109	227
110	214
111	208
112	194
113	204
114	214
115	185
116	206
117	241
118	197
119	171
120	200
121	173
122	164
123	172
124	165
125	145
126	163
127	139
128	154
129	145
130	154
131	136
132	129
133	130
134	146
135	135
136	130
137	117
138	122
139	99
140	126
141	104
142	101
143	120
144	105
145	98
146	97
147	100
148	87
149	102
150	88
151	83
152	86
153	101
154	98
155	81
156	77
157	74
158	88
159	79
160	74
161	96
162	75
163	72
164	68
165	74
166	88
167	69
168	62
169	43
170	83
171	49
172	54
173	68
174	72
175	54
176	57
177	49
178	72
179	56
180	62
181	38
182	60
183	48
184	42
185	53
186	46
187	62
188	66
189	44
190	61
191	56
192	54
193	40
194	51
195	37
196	52
197	39
198	38
199	43
200	30
201	37
202	31
203	41
204	35
205	36
206	32
207	42
208	38
209	36
210	41
211	26
212	26
213	32
214	30
215	29
216	32
217	32
218	33
219	23
220	42
221	20
222	28
223	25
224	27
225	22
226	22
227	24
228	27
229	37
230	23
231	36
232	28
233	32
234	20
235	26
236	22
237	22
238	22
239	25
240	22
241	21
242	24
243	25
244	21
245	28
246	16
247	20
248	25
249	21
250	25
251	28
252	23
253	18
254	24
255	21
256	17
257	25
258	14
259	15
260	22
261	17
262	21
263	22
264	12
265	16
266	18
267	19
268	10
269	14
270	18
271	15
272	13
273	16
274	16
275	14
276	15
277	14
278	18
279	20
280	12
281	19
282	14
283	15
284	15
285	7
286	17
287	15
288	17
289	16
290	12
291	9
292	13
293	14
294	11
295	10
296	14
297	12
298	18
299	17
300	16
301	14
302	11
303	11
304	13
305	9
306	13
307	13
308	6
309	9
310	9
311	13
312	12
313	12
314	11
315	10
316	8
317	8
318	11
319	7
320	8
321	18
322	12
323	11
324	7
325	6
326	9
327	16
328	10
329	6
330	4
331	9
332	18
333	11
334	12
335	9
336	4
337	10
338	10
339	7
340	6
341	11
342	4
343	5
344	6
345	8
346	10
347	5
348	5
349	7
350	5
351	7
352	6
353	9
354	9
355	7
356	9
357	10
358	7
359	5
360	3
361	6
362	7
363	7
364	2
365	10
366	7
367	6
368	11
369	6
370	6
371	5
372	6
373	6
374	6
375	7
376	4
377	9
378	5
379	8
380	11
381	10
382	7
383	6
384	4
385	4
386	8
387	8
388	5
389	5
390	4
391	1
392	6
393	7
394	7
395	2
396	8
397	4
398	4
399	2
400	6
401	2
402	10
403	7
404	3
405	2
406	4
407	7
408	4
409	2
410	7
411	11
412	9
413	8
414	4
415	2
416	5
417	4
418	5
419	5
420	5
421	3
422	2
423	2
424	4
425	4
426	3
427	6
428	2
429	5
430	6
431	3
432	5
433	1
434	4
435	2
437	4
438	3
439	6
440	3
441	5
442	5
443	4
444	1
445	4
446	1
447	2
448	3
449	4
450	2
451	5
453	4
454	1
455	2
457	1
458	2
459	1
460	2
461	4
462	1
464	3
465	2
466	1
467	1
469	4
470	2
471	3
472	2
473	2
474	1
475	1
476	5
477	2
478	4
479	3
480	3
481	4
482	2
483	4
484	1
485	1
486	4
488	8
489	2
490	2
491	1
492	4
493	2
494	3
496	2
497	2
498	2
499	4
500	3
502	3
503	4
504	6
505	2
506	1
508	2
509	1
510	4
511	1
512	2
513	1
514	2
515	1
516	3
517	3
518	2
519	1
520	5
521	3
522	6
523	4
524	1
526	2
527	1
528	3
529	2
530	5
531	2
532	4
533	1
534	4
535	1
536	1
537	5
538	5
539	3
540	1
542	3
543	5
544	1
545	1
547	2
548	2
549	4
550	2
551	1
554	4
555	3
556	5
557	2
558	4
559	2
560	4
561	1
562	3
563	1
564	4
566	1
568	3
569	1
570	4
571	3
572	1
573	5
574	2
575	1
576	2
577	3
578	1
579	1
580	1
582	3
584	5
585	1
586	1
587	1
588	1
589	3
590	2
591	1
592	2
593	3
597	2
598	1
600	2
602	1
603	1
605	1
608	1
609	3
610	3
613	3
614	3
615	1
616	2
617	1
618	1
619	2
620	1
621	2
622	1
623	1
625	2
627	1
628	1
631	2
635	4
636	1
639	1
640	2
641	2
643	1
644	1
645	1
651	3
653	1
655	2
656	1
657	2
658	1
659	1
660	2
664	1
665	1
666	1
667	3
668	2
670	1
671	2
672	1
673	1
675	2
677	2
678	1
680	1
681	1
685	3
686	2
689	3
690	2
691	2
694	1
695	2
696	2
698	4
699	1
700	1
703	1
704	3
707	2
708	1
711	2
720	2
722	2
727	1
728	1
731	1
733	3
737	1
738	1
739	1
740	1
741	1
742	2
744	1
747	3
748	2
750	2
752	1
753	1
755	1
758	1
761	1
763	1
765	1
768	2
775	1
777	1
779	2
780	1
783	1
784	2
786	1
788	1
789	2
790	1
791	1
792	2
794	1
797	1
799	1
800	4
805	2
806	1
808	1
809	1
812	1
815	2
817	2
818	2
820	3
821	1
824	1
828	1
829	1
830	1
838	2
840	1
841	1
842	1
844	1
847	1
849	1
856	1
864	1
866	1
868	1
869	1
876	2
880	1
887	1
890	1
895	2
898	1
899	2
900	1
906	1
910	1
918	3
926	1
927	1
929	1
935	1
943	1
945	1
946	2
948	1
949	2
950	1
951	1
968	1
978	1
987	1
1002	1
1009	1
1011	1
1013	1
1016	2
1017	1
1018	2
1020	1
1021	1
1023	1
1024	1
1027	2
1031	1
1043	1
1044	1
1055	1
1065	1
1073	1
1079	1
1083	1
1086	1
1098	1
1100	1
1101	1
1107	1
1124	1
1153	1
1156	1
1163	1
1176	1
1184	3
1186	1
1192	1
1225	1
1227	1
1228	1
1260	1
1280	1
1295	1
1296	1
1298	2
1303	1
1313	1
1317	1
1322	1
1343	1
1349	1
1377	1
1388	1
1397	1
1415	1
1417	1
1421	1
1437	1
1446	1
1455	1
1474	1
1476	1
1493	1
1523	1
1546	1
1556	1
1571	1
1574	1
1577	1
1646	2
1673	1
1675	1
1688	1
1689	1
1701	1
1707	1
1709	1
1737	1
1782	1
1788	1
1830	1
1858	1
1906	1
1935	1
1942	1
1954	1
1966	1
1974	1
2007	1
2172	1
2187	1
2197	1
2267	1
2378	1
2443	1
2756	1
2914	1
2949	1
3052	1
3126	1
4602	1
8151	1
12673	1
41751	1
623263	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........._.......__...._...__..._._.__.__....__._..._.._._._........_..
..._.._._......_........____....____.._...._........__..._.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]