Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/ea7e1bfd07612c80b138d796182949/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/aa01862f9d34d23525d80b75097ca4/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/aa01862f9d34d23525d80b75097ca4/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-01eb49-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 09:23:28.312 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 09:23:28 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-01eb49-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 09:23:28 GMT 2026] Executing as ?@nf-8faa01862f9d34d23525d80b75097ca4-3711d-5wg5t on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 09:23:28 MarkDuplicates Start of doWork freeMemory: 105830144; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 09:23:28 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 09:23:28 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 09:23:32 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,244,410 INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 2471 as yet unmatched pairs. 96 records in RAM. INFO 2026-06-08 09:23:34 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,754,195 INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 5657 as yet unmatched pairs. 824 records in RAM. INFO 2026-06-08 09:23:36 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,496,520 INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 7404 as yet unmatched pairs. 179 records in RAM. INFO 2026-06-08 09:23:37 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:9,871,186 INFO 2026-06-08 09:23:37 MarkDuplicates Tracking 11270 as yet unmatched pairs. 2139 records in RAM. INFO 2026-06-08 09:23:40 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:12,244,389 INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 11639 as yet unmatched pairs. 549 records in RAM. INFO 2026-06-08 09:23:42 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,131,746 INFO 2026-06-08 09:23:42 MarkDuplicates Tracking 13304 as yet unmatched pairs. 427 records in RAM. INFO 2026-06-08 09:23:44 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:19,144,809 INFO 2026-06-08 09:23:44 MarkDuplicates Tracking 15591 as yet unmatched pairs. 770 records in RAM. INFO 2026-06-08 09:23:45 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:21,823,365 INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 18285 as yet unmatched pairs. 1655 records in RAM. INFO 2026-06-08 09:23:48 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,722 INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 20326 as yet unmatched pairs. 1706 records in RAM. INFO 2026-06-08 09:23:49 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,794,530 INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 21144 as yet unmatched pairs. 661 records in RAM. INFO 2026-06-08 09:23:51 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:26,554,624 INFO 2026-06-08 09:23:51 MarkDuplicates Tracking 22772 as yet unmatched pairs. 536 records in RAM. INFO 2026-06-08 09:23:53 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,766 INFO 2026-06-08 09:23:53 MarkDuplicates Tracking 36436 as yet unmatched pairs. 12677 records in RAM. INFO 2026-06-08 09:23:56 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:27,841,141 INFO 2026-06-08 09:23:56 MarkDuplicates Tracking 26193 as yet unmatched pairs. 330 records in RAM. INFO 2026-06-08 09:24:00 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 3s. Last read position: chr1:31,694,143 INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 28415 as yet unmatched pairs. 750 records in RAM. INFO 2026-06-08 09:24:01 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:34,757,888 INFO 2026-06-08 09:24:01 MarkDuplicates Tracking 29989 as yet unmatched pairs. 500 records in RAM. INFO 2026-06-08 09:24:04 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:36,320,236 INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 31747 as yet unmatched pairs. 304 records in RAM. INFO 2026-06-08 09:24:06 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:39,424,069 INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 33663 as yet unmatched pairs. 460 records in RAM. INFO 2026-06-08 09:24:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:42,693,499 INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 35421 as yet unmatched pairs. 605 records in RAM. INFO 2026-06-08 09:24:10 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:43,975,010 INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 37427 as yet unmatched pairs. 612 records in RAM. INFO 2026-06-08 09:24:12 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,635,961 INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 38833 as yet unmatched pairs. 301 records in RAM. INFO 2026-06-08 09:24:14 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:54,758,723 INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 40398 as yet unmatched pairs. 142 records in RAM. INFO 2026-06-08 09:24:16 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:66,365,723 INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 42685 as yet unmatched pairs. 477 records in RAM. INFO 2026-06-08 09:24:18 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,025 INFO 2026-06-08 09:24:18 MarkDuplicates Tracking 45419 as yet unmatched pairs. 1678 records in RAM. INFO 2026-06-08 09:24:20 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:89,381,944 INFO 2026-06-08 09:24:20 MarkDuplicates Tracking 46345 as yet unmatched pairs. 1169 records in RAM. INFO 2026-06-08 09:24:22 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:108,199,962 INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 47698 as yet unmatched pairs. 1055 records in RAM. INFO 2026-06-08 09:24:24 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:110,342,055 INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 49379 as yet unmatched pairs. 901 records in RAM. INFO 2026-06-08 09:24:26 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:114,511,072 INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 50240 as yet unmatched pairs. 109 records in RAM. INFO 2026-06-08 09:24:28 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,692 INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 53799 as yet unmatched pairs. 2065 records in RAM. INFO 2026-06-08 09:24:30 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:120,453,413 INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 53531 as yet unmatched pairs. 230 records in RAM. INFO 2026-06-08 09:24:32 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:146,128,252 INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 54824 as yet unmatched pairs. 549 records in RAM. INFO 2026-06-08 09:24:33 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:148,981,297 INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 55784 as yet unmatched pairs. 744 records in RAM. INFO 2026-06-08 09:24:35 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:150,159,201 INFO 2026-06-08 09:24:35 MarkDuplicates Tracking 56834 as yet unmatched pairs. 811 records in RAM. INFO 2026-06-08 09:24:37 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,806,705 INFO 2026-06-08 09:24:37 MarkDuplicates Tracking 58570 as yet unmatched pairs. 730 records in RAM. INFO 2026-06-08 09:24:39 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:152,155,388 INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 65522 as yet unmatched pairs. 6149 records in RAM. INFO 2026-06-08 09:24:41 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:152,305,105 INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 65849 as yet unmatched pairs. 5409 records in RAM. INFO 2026-06-08 09:24:42 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:152,311,401 INFO 2026-06-08 09:24:42 MarkDuplicates Tracking 63206 as yet unmatched pairs. 1719 records in RAM. INFO 2026-06-08 09:24:44 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:152,410,162 INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 72811 as yet unmatched pairs. 10084 records in RAM. INFO 2026-06-08 09:24:45 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:152,566,134 INFO 2026-06-08 09:24:45 MarkDuplicates Tracking 65224 as yet unmatched pairs. 825 records in RAM. INFO 2026-06-08 09:24:47 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:152,759,871 INFO 2026-06-08 09:24:47 MarkDuplicates Tracking 73319 as yet unmatched pairs. 7611 records in RAM. INFO 2026-06-08 09:24:49 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:152,911,089 INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 71024 as yet unmatched pairs. 3282 records in RAM. INFO 2026-06-08 09:24:50 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:153,003,177 INFO 2026-06-08 09:24:50 MarkDuplicates Tracking 139881 as yet unmatched pairs. 71074 records in RAM. INFO 2026-06-08 09:24:52 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:153,032,363 INFO 2026-06-08 09:24:52 MarkDuplicates Tracking 97070 as yet unmatched pairs. 26826 records in RAM. INFO 2026-06-08 09:24:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:153,040,244 INFO 2026-06-08 09:24:54 MarkDuplicates Tracking 75455 as yet unmatched pairs. 4062 records in RAM. INFO 2026-06-08 09:24:55 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:153,056,611 INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 112205 as yet unmatched pairs. 40156 records in RAM. INFO 2026-06-08 09:24:56 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:153,070,703 INFO 2026-06-08 09:24:56 MarkDuplicates Tracking 88326 as yet unmatched pairs. 15729 records in RAM. INFO 2026-06-08 09:24:58 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:153,093,555 INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 124875 as yet unmatched pairs. 51392 records in RAM. INFO 2026-06-08 09:25:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:153,093,709 INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 75125 as yet unmatched pairs. 391 records in RAM. INFO 2026-06-08 09:25:03 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:153,360,651 INFO 2026-06-08 09:25:03 MarkDuplicates Tracking 95911 as yet unmatched pairs. 19913 records in RAM. INFO 2026-06-08 09:25:06 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:153,420,153 INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 79062 as yet unmatched pairs. 1652 records in RAM. INFO 2026-06-08 09:25:07 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:153,457,880 INFO 2026-06-08 09:25:07 MarkDuplicates Tracking 138684 as yet unmatched pairs. 60148 records in RAM. INFO 2026-06-08 09:25:09 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:153,659,467 INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 80077 as yet unmatched pairs. 235 records in RAM. INFO 2026-06-08 09:25:11 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:154,257,126 INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 81912 as yet unmatched pairs. 517 records in RAM. INFO 2026-06-08 09:25:13 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:155,056,432 INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 84645 as yet unmatched pairs. 1444 records in RAM. INFO 2026-06-08 09:25:16 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:155,957,761 INFO 2026-06-08 09:25:16 MarkDuplicates Tracking 85346 as yet unmatched pairs. 521 records in RAM. INFO 2026-06-08 09:25:18 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,905 INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 102803 as yet unmatched pairs. 15378 records in RAM. INFO 2026-06-08 09:25:20 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:156,591,778 INFO 2026-06-08 09:25:20 MarkDuplicates Tracking 89704 as yet unmatched pairs. 265 records in RAM. INFO 2026-06-08 09:25:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:159,858,739 INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 91983 as yet unmatched pairs. 760 records in RAM. INFO 2026-06-08 09:25:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:161,165,394 INFO 2026-06-08 09:25:24 MarkDuplicates Tracking 93146 as yet unmatched pairs. 203 records in RAM. INFO 2026-06-08 09:25:25 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:167,396,332 INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 94617 as yet unmatched pairs. 178 records in RAM. INFO 2026-06-08 09:25:27 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:171,587,689 INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 96780 as yet unmatched pairs. 692 records in RAM. INFO 2026-06-08 09:25:29 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:180,196,460 INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 100324 as yet unmatched pairs. 2571 records in RAM. INFO 2026-06-08 09:25:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:184,054,786 INFO 2026-06-08 09:25:31 MarkDuplicates Tracking 99991 as yet unmatched pairs. 404 records in RAM. INFO 2026-06-08 09:25:33 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:196,725,160 INFO 2026-06-08 09:25:33 MarkDuplicates Tracking 101394 as yet unmatched pairs. 428 records in RAM. INFO 2026-06-08 09:25:34 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:201,317,645 INFO 2026-06-08 09:25:34 MarkDuplicates Tracking 107534 as yet unmatched pairs. 4947 records in RAM. INFO 2026-06-08 09:25:36 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:201,957,283 INFO 2026-06-08 09:25:36 MarkDuplicates Tracking 104770 as yet unmatched pairs. 308 records in RAM. INFO 2026-06-08 09:25:38 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:203,799,219 INFO 2026-06-08 09:25:38 MarkDuplicates Tracking 106800 as yet unmatched pairs. 645 records in RAM. INFO 2026-06-08 09:25:40 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:207,022,955 INFO 2026-06-08 09:25:40 MarkDuplicates Tracking 108916 as yet unmatched pairs. 1119 records in RAM. INFO 2026-06-08 09:25:41 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:212,035,349 INFO 2026-06-08 09:25:41 MarkDuplicates Tracking 109772 as yet unmatched pairs. 195 records in RAM. INFO 2026-06-08 09:25:43 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:224,411,497 INFO 2026-06-08 09:25:43 MarkDuplicates Tracking 111719 as yet unmatched pairs. 559 records in RAM. INFO 2026-06-08 09:25:44 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr1:228,166,116 INFO 2026-06-08 09:25:44 MarkDuplicates Tracking 112983 as yet unmatched pairs. 109 records in RAM. INFO 2026-06-08 09:25:47 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr1:232,514,389 INFO 2026-06-08 09:25:47 MarkDuplicates Tracking 115515 as yet unmatched pairs. 400 records in RAM. INFO 2026-06-08 09:25:49 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr1:243,552,902 INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 117621 as yet unmatched pairs. 624 records in RAM. INFO 2026-06-08 09:25:51 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:3,576,534 INFO 2026-06-08 09:25:51 MarkDuplicates Tracking 119798 as yet unmatched pairs. 116876 records in RAM. INFO 2026-06-08 09:25:53 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:14,634,588 INFO 2026-06-08 09:25:53 MarkDuplicates Tracking 121888 as yet unmatched pairs. 118911 records in RAM. INFO 2026-06-08 09:25:55 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:20,224,911 INFO 2026-06-08 09:25:55 MarkDuplicates Tracking 125213 as yet unmatched pairs. 122194 records in RAM. INFO 2026-06-08 09:25:56 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:26,776,446 INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 124527 as yet unmatched pairs. 121448 records in RAM. INFO 2026-06-08 09:25:58 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,866 INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 135877 as yet unmatched pairs. 132740 records in RAM. INFO 2026-06-08 09:26:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,255 INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 176624 as yet unmatched pairs. 120209 records in RAM. INFO 2026-06-08 09:26:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 459003 as yet unmatched pairs. 98881 records in RAM. INFO 2026-06-08 09:26:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:26:04 MarkDuplicates Tracking 887090 as yet unmatched pairs. 66588 records in RAM. INFO 2026-06-08 09:26:05 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,411 INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 919042 as yet unmatched pairs. 64440 records in RAM. INFO 2026-06-08 09:26:07 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:39,278,434 INFO 2026-06-08 09:26:07 MarkDuplicates Tracking 953635 as yet unmatched pairs. 60688 records in RAM. INFO 2026-06-08 09:26:08 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:46,759,912 INFO 2026-06-08 09:26:08 MarkDuplicates Tracking 951956 as yet unmatched pairs. 58963 records in RAM. INFO 2026-06-08 09:26:10 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:55,317,788 INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 950356 as yet unmatched pairs. 57321 records in RAM. INFO 2026-06-08 09:26:12 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:65,088,383 INFO 2026-06-08 09:26:12 MarkDuplicates Tracking 949559 as yet unmatched pairs. 56467 records in RAM. INFO 2026-06-08 09:26:13 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:71,076,648 INFO 2026-06-08 09:26:13 MarkDuplicates Tracking 948807 as yet unmatched pairs. 55680 records in RAM. INFO 2026-06-08 09:26:16 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:74,462,938 INFO 2026-06-08 09:26:16 MarkDuplicates Tracking 945759 as yet unmatched pairs. 52600 records in RAM. INFO 2026-06-08 09:26:18 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:86,505,792 INFO 2026-06-08 09:26:18 MarkDuplicates Tracking 944637 as yet unmatched pairs. 51452 records in RAM. INFO 2026-06-08 09:26:20 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:96,552,122 INFO 2026-06-08 09:26:20 MarkDuplicates Tracking 942383 as yet unmatched pairs. 49147 records in RAM. INFO 2026-06-08 09:26:22 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:102,176,446 INFO 2026-06-08 09:26:22 MarkDuplicates Tracking 940873 as yet unmatched pairs. 47560 records in RAM. INFO 2026-06-08 09:26:24 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:109,804,055 INFO 2026-06-08 09:26:24 MarkDuplicates Tracking 939051 as yet unmatched pairs. 45713 records in RAM. INFO 2026-06-08 09:26:26 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:113,127,731 INFO 2026-06-08 09:26:26 MarkDuplicates Tracking 943546 as yet unmatched pairs. 50167 records in RAM. INFO 2026-06-08 09:26:28 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,282 INFO 2026-06-08 09:26:28 MarkDuplicates Tracking 937568 as yet unmatched pairs. 44159 records in RAM. INFO 2026-06-08 09:26:29 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:131,263,822 INFO 2026-06-08 09:26:29 MarkDuplicates Tracking 934834 as yet unmatched pairs. 41349 records in RAM. INFO 2026-06-08 09:26:31 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:151,538,241 INFO 2026-06-08 09:26:31 MarkDuplicates Tracking 934668 as yet unmatched pairs. 41105 records in RAM. INFO 2026-06-08 09:26:33 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:151,650,583 INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 933251 as yet unmatched pairs. 39674 records in RAM. INFO 2026-06-08 09:26:34 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:160,196,345 INFO 2026-06-08 09:26:34 MarkDuplicates Tracking 931776 as yet unmatched pairs. 38150 records in RAM. INFO 2026-06-08 09:26:36 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:172,489,618 INFO 2026-06-08 09:26:36 MarkDuplicates Tracking 930715 as yet unmatched pairs. 37043 records in RAM. INFO 2026-06-08 09:26:38 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:178,531,747 INFO 2026-06-08 09:26:38 MarkDuplicates Tracking 931068 as yet unmatched pairs. 37347 records in RAM. INFO 2026-06-08 09:26:40 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:178,552,040 INFO 2026-06-08 09:26:40 MarkDuplicates Tracking 927554 as yet unmatched pairs. 33825 records in RAM. INFO 2026-06-08 09:26:41 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:178,572,859 INFO 2026-06-08 09:26:41 MarkDuplicates Tracking 928239 as yet unmatched pairs. 34496 records in RAM. INFO 2026-06-08 09:26:43 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:178,592,453 INFO 2026-06-08 09:26:43 MarkDuplicates Tracking 926388 as yet unmatched pairs. 32614 records in RAM. INFO 2026-06-08 09:26:45 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:178,618,810 INFO 2026-06-08 09:26:45 MarkDuplicates Tracking 923814 as yet unmatched pairs. 30024 records in RAM. INFO 2026-06-08 09:26:46 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:178,657,756 INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 928027 as yet unmatched pairs. 34211 records in RAM. INFO 2026-06-08 09:26:48 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:178,712,370 INFO 2026-06-08 09:26:48 MarkDuplicates Tracking 922237 as yet unmatched pairs. 28404 records in RAM. INFO 2026-06-08 09:26:50 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:178,735,880 INFO 2026-06-08 09:26:50 MarkDuplicates Tracking 921329 as yet unmatched pairs. 27474 records in RAM. INFO 2026-06-08 09:26:54 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 3s. Last read position: chr2:178,802,310 INFO 2026-06-08 09:26:54 MarkDuplicates Tracking 922879 as yet unmatched pairs. 28995 records in RAM. INFO 2026-06-08 09:26:57 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 3s. Last read position: chr2:188,994,576 INFO 2026-06-08 09:26:57 MarkDuplicates Tracking 919480 as yet unmatched pairs. 25558 records in RAM. INFO 2026-06-08 09:26:59 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:189,561,968 INFO 2026-06-08 09:26:59 MarkDuplicates Tracking 914921 as yet unmatched pairs. 20952 records in RAM. INFO 2026-06-08 09:27:01 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:197,393,001 INFO 2026-06-08 09:27:01 MarkDuplicates Tracking 913625 as yet unmatched pairs. 19616 records in RAM. INFO 2026-06-08 09:27:02 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:203,190,710 INFO 2026-06-08 09:27:02 MarkDuplicates Tracking 911381 as yet unmatched pairs. 17331 records in RAM. INFO 2026-06-08 09:27:04 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,613 INFO 2026-06-08 09:27:04 MarkDuplicates Tracking 919241 as yet unmatched pairs. 25156 records in RAM. INFO 2026-06-08 09:27:06 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,821 INFO 2026-06-08 09:27:06 MarkDuplicates Tracking 920873 as yet unmatched pairs. 26769 records in RAM. INFO 2026-06-08 09:27:07 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,118 INFO 2026-06-08 09:27:07 MarkDuplicates Tracking 916682 as yet unmatched pairs. 22555 records in RAM. INFO 2026-06-08 09:27:09 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:216,117,758 INFO 2026-06-08 09:27:09 MarkDuplicates Tracking 906375 as yet unmatched pairs. 12229 records in RAM. INFO 2026-06-08 09:27:11 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:218,738,031 INFO 2026-06-08 09:27:11 MarkDuplicates Tracking 904113 as yet unmatched pairs. 9923 records in RAM. INFO 2026-06-08 09:27:13 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:219,541,863 INFO 2026-06-08 09:27:13 MarkDuplicates Tracking 903041 as yet unmatched pairs. 8827 records in RAM. INFO 2026-06-08 09:27:15 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:230,878,231 INFO 2026-06-08 09:27:15 MarkDuplicates Tracking 900640 as yet unmatched pairs. 6360 records in RAM. INFO 2026-06-08 09:27:16 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:237,336,377 INFO 2026-06-08 09:27:16 MarkDuplicates Tracking 899338 as yet unmatched pairs. 5017 records in RAM. INFO 2026-06-08 09:27:18 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,377,207 INFO 2026-06-08 09:27:18 MarkDuplicates Tracking 901244 as yet unmatched pairs. 6894 records in RAM. INFO 2026-06-08 09:27:20 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:241,229,481 INFO 2026-06-08 09:27:20 MarkDuplicates Tracking 895520 as yet unmatched pairs. 1117 records in RAM. INFO 2026-06-08 09:27:22 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:9,787,199 INFO 2026-06-08 09:27:22 MarkDuplicates Tracking 893731 as yet unmatched pairs. 41937 records in RAM. INFO 2026-06-08 09:27:24 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:13,570,340 INFO 2026-06-08 09:27:24 MarkDuplicates Tracking 893722 as yet unmatched pairs. 41897 records in RAM. INFO 2026-06-08 09:27:25 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:25,615,543 INFO 2026-06-08 09:27:25 MarkDuplicates Tracking 890338 as yet unmatched pairs. 38414 records in RAM. INFO 2026-06-08 09:27:27 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:37,980,708 INFO 2026-06-08 09:27:27 MarkDuplicates Tracking 888690 as yet unmatched pairs. 36725 records in RAM. INFO 2026-06-08 09:27:29 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:42,638,499 INFO 2026-06-08 09:27:29 MarkDuplicates Tracking 886948 as yet unmatched pairs. 34956 records in RAM. INFO 2026-06-08 09:27:31 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,193 INFO 2026-06-08 09:27:31 MarkDuplicates Tracking 885382 as yet unmatched pairs. 33338 records in RAM. INFO 2026-06-08 09:27:33 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:48,466,902 INFO 2026-06-08 09:27:33 MarkDuplicates Tracking 883856 as yet unmatched pairs. 31764 records in RAM. INFO 2026-06-08 09:27:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:48,604,341 INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 881521 as yet unmatched pairs. 29387 records in RAM. INFO 2026-06-08 09:27:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:49,426,288 INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 879416 as yet unmatched pairs. 27251 records in RAM. INFO 2026-06-08 09:27:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:51,394,019 INFO 2026-06-08 09:27:40 MarkDuplicates Tracking 877706 as yet unmatched pairs. 25507 records in RAM. INFO 2026-06-08 09:27:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:52,522,112 INFO 2026-06-08 09:27:42 MarkDuplicates Tracking 877264 as yet unmatched pairs. 25012 records in RAM. INFO 2026-06-08 09:27:44 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:58,148,823 INFO 2026-06-08 09:27:44 MarkDuplicates Tracking 875307 as yet unmatched pairs. 22997 records in RAM. INFO 2026-06-08 09:27:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:85,638,906 INFO 2026-06-08 09:27:45 MarkDuplicates Tracking 872856 as yet unmatched pairs. 20466 records in RAM. INFO 2026-06-08 09:27:47 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:101,852,098 INFO 2026-06-08 09:27:47 MarkDuplicates Tracking 872825 as yet unmatched pairs. 20395 records in RAM. INFO 2026-06-08 09:27:49 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:119,863,484 INFO 2026-06-08 09:27:49 MarkDuplicates Tracking 870326 as yet unmatched pairs. 17847 records in RAM. INFO 2026-06-08 09:27:51 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,014 INFO 2026-06-08 09:27:51 MarkDuplicates Tracking 870743 as yet unmatched pairs. 18225 records in RAM. INFO 2026-06-08 09:27:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:127,620,838 INFO 2026-06-08 09:27:52 MarkDuplicates Tracking 866837 as yet unmatched pairs. 14248 records in RAM. INFO 2026-06-08 09:27:54 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:129,606,318 INFO 2026-06-08 09:27:54 MarkDuplicates Tracking 865892 as yet unmatched pairs. 13262 records in RAM. INFO 2026-06-08 09:27:56 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,217 INFO 2026-06-08 09:27:56 MarkDuplicates Tracking 863837 as yet unmatched pairs. 11153 records in RAM. INFO 2026-06-08 09:27:58 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:149,657,146 INFO 2026-06-08 09:27:58 MarkDuplicates Tracking 865465 as yet unmatched pairs. 12746 records in RAM. INFO 2026-06-08 09:27:59 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:160,535,854 INFO 2026-06-08 09:27:59 MarkDuplicates Tracking 860288 as yet unmatched pairs. 7496 records in RAM. INFO 2026-06-08 09:28:01 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:183,033,998 INFO 2026-06-08 09:28:01 MarkDuplicates Tracking 858603 as yet unmatched pairs. 5765 records in RAM. INFO 2026-06-08 09:28:03 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:184,326,905 INFO 2026-06-08 09:28:03 MarkDuplicates Tracking 857752 as yet unmatched pairs. 4872 records in RAM. INFO 2026-06-08 09:28:05 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:189,867,834 INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 858087 as yet unmatched pairs. 5145 records in RAM. INFO 2026-06-08 09:28:07 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:196,502,943 INFO 2026-06-08 09:28:07 MarkDuplicates Tracking 854251 as yet unmatched pairs. 1233 records in RAM. INFO 2026-06-08 09:28:09 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:1,236,711 INFO 2026-06-08 09:28:09 MarkDuplicates Tracking 854248 as yet unmatched pairs. 26684 records in RAM. INFO 2026-06-08 09:28:12 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr4:2,693,767 INFO 2026-06-08 09:28:12 MarkDuplicates Tracking 850282 as yet unmatched pairs. 22684 records in RAM. INFO 2026-06-08 09:28:13 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:6,378,521 INFO 2026-06-08 09:28:13 MarkDuplicates Tracking 849268 as yet unmatched pairs. 21637 records in RAM. INFO 2026-06-08 09:28:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:15,003,006 INFO 2026-06-08 09:28:15 MarkDuplicates Tracking 846129 as yet unmatched pairs. 18442 records in RAM. INFO 2026-06-08 09:28:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:37,837,597 INFO 2026-06-08 09:28:17 MarkDuplicates Tracking 845516 as yet unmatched pairs. 17786 records in RAM. INFO 2026-06-08 09:28:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:48,542,084 INFO 2026-06-08 09:28:19 MarkDuplicates Tracking 843319 as yet unmatched pairs. 15548 records in RAM. INFO 2026-06-08 09:28:20 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:57,109,892 INFO 2026-06-08 09:28:20 MarkDuplicates Tracking 846454 as yet unmatched pairs. 18649 records in RAM. INFO 2026-06-08 09:28:22 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:74,365,237 INFO 2026-06-08 09:28:22 MarkDuplicates Tracking 841869 as yet unmatched pairs. 14020 records in RAM. INFO 2026-06-08 09:28:24 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:82,705,399 INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 838281 as yet unmatched pairs. 10404 records in RAM. INFO 2026-06-08 09:28:26 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:88,479,372 INFO 2026-06-08 09:28:26 MarkDuplicates Tracking 836799 as yet unmatched pairs. 8873 records in RAM. INFO 2026-06-08 09:28:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:107,989,868 INFO 2026-06-08 09:28:27 MarkDuplicates Tracking 835271 as yet unmatched pairs. 7300 records in RAM. INFO 2026-06-08 09:28:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:122,301,307 INFO 2026-06-08 09:28:29 MarkDuplicates Tracking 833763 as yet unmatched pairs. 5755 records in RAM. INFO 2026-06-08 09:28:31 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:146,293,950 INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 832230 as yet unmatched pairs. 4180 records in RAM. INFO 2026-06-08 09:28:33 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:159,353,805 INFO 2026-06-08 09:28:33 MarkDuplicates Tracking 830746 as yet unmatched pairs. 2640 records in RAM. INFO 2026-06-08 09:28:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:184,632,322 INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 829267 as yet unmatched pairs. 1116 records in RAM. INFO 2026-06-08 09:28:36 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:1,576,259 INFO 2026-06-08 09:28:36 MarkDuplicates Tracking 827440 as yet unmatched pairs. 41223 records in RAM. INFO 2026-06-08 09:28:38 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,576 INFO 2026-06-08 09:28:38 MarkDuplicates Tracking 827096 as yet unmatched pairs. 40839 records in RAM. INFO 2026-06-08 09:28:40 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:37,020,412 INFO 2026-06-08 09:28:40 MarkDuplicates Tracking 824085 as yet unmatched pairs. 37770 records in RAM. INFO 2026-06-08 09:28:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:55,400,399 INFO 2026-06-08 09:28:42 MarkDuplicates Tracking 822609 as yet unmatched pairs. 36246 records in RAM. INFO 2026-06-08 09:28:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:69,234,956 INFO 2026-06-08 09:28:44 MarkDuplicates Tracking 821162 as yet unmatched pairs. 34758 records in RAM. INFO 2026-06-08 09:28:46 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:75,360,036 INFO 2026-06-08 09:28:46 MarkDuplicates Tracking 820392 as yet unmatched pairs. 33953 records in RAM. INFO 2026-06-08 09:28:48 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,110 INFO 2026-06-08 09:28:48 MarkDuplicates Tracking 819319 as yet unmatched pairs. 32842 records in RAM. INFO 2026-06-08 09:28:50 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:96,781,710 INFO 2026-06-08 09:28:50 MarkDuplicates Tracking 817006 as yet unmatched pairs. 30492 records in RAM. INFO 2026-06-08 09:28:52 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:119,477,416 INFO 2026-06-08 09:28:52 MarkDuplicates Tracking 815890 as yet unmatched pairs. 29321 records in RAM. INFO 2026-06-08 09:28:54 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:133,980,881 INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 814199 as yet unmatched pairs. 27590 records in RAM. INFO 2026-06-08 09:28:55 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:135,578,838 INFO 2026-06-08 09:28:55 MarkDuplicates Tracking 816540 as yet unmatched pairs. 29897 records in RAM. INFO 2026-06-08 09:28:57 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:138,947,260 INFO 2026-06-08 09:28:57 MarkDuplicates Tracking 810334 as yet unmatched pairs. 23669 records in RAM. INFO 2026-06-08 09:28:59 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:141,389,654 INFO 2026-06-08 09:28:59 MarkDuplicates Tracking 808609 as yet unmatched pairs. 21876 records in RAM. INFO 2026-06-08 09:29:01 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:143,400,786 INFO 2026-06-08 09:29:01 MarkDuplicates Tracking 806978 as yet unmatched pairs. 20207 records in RAM. INFO 2026-06-08 09:29:02 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:149,345,534 INFO 2026-06-08 09:29:02 MarkDuplicates Tracking 806076 as yet unmatched pairs. 19273 records in RAM. INFO 2026-06-08 09:29:04 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:150,297,779 INFO 2026-06-08 09:29:04 MarkDuplicates Tracking 804070 as yet unmatched pairs. 17229 records in RAM. INFO 2026-06-08 09:29:07 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 3s. Last read position: chr5:150,403,284 INFO 2026-06-08 09:29:07 MarkDuplicates Tracking 838588 as yet unmatched pairs. 51724 records in RAM. INFO 2026-06-08 09:29:10 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,902 INFO 2026-06-08 09:29:10 MarkDuplicates Tracking 855376 as yet unmatched pairs. 68480 records in RAM. INFO 2026-06-08 09:29:11 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:150,698,498 INFO 2026-06-08 09:29:11 MarkDuplicates Tracking 798561 as yet unmatched pairs. 11635 records in RAM. INFO 2026-06-08 09:29:13 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:151,786,692 INFO 2026-06-08 09:29:13 MarkDuplicates Tracking 799435 as yet unmatched pairs. 12483 records in RAM. INFO 2026-06-08 09:29:15 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:168,190,425 INFO 2026-06-08 09:29:15 MarkDuplicates Tracking 795380 as yet unmatched pairs. 8382 records in RAM. INFO 2026-06-08 09:29:17 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:172,096,430 INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 794214 as yet unmatched pairs. 7173 records in RAM. INFO 2026-06-08 09:29:18 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:177,303,987 INFO 2026-06-08 09:29:18 MarkDuplicates Tracking 793189 as yet unmatched pairs. 6121 records in RAM. INFO 2026-06-08 09:29:20 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:179,614,867 INFO 2026-06-08 09:29:20 MarkDuplicates Tracking 790271 as yet unmatched pairs. 3169 records in RAM. INFO 2026-06-08 09:29:22 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:179,870,349 INFO 2026-06-08 09:29:22 MarkDuplicates Tracking 788636 as yet unmatched pairs. 1509 records in RAM. INFO 2026-06-08 09:29:24 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:3,154,289 INFO 2026-06-08 09:29:24 MarkDuplicates Tracking 791676 as yet unmatched pairs. 59077 records in RAM. INFO 2026-06-08 09:29:25 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,993 INFO 2026-06-08 09:29:25 MarkDuplicates Tracking 786759 as yet unmatched pairs. 54121 records in RAM. INFO 2026-06-08 09:29:27 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:7,571,381 INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 788987 as yet unmatched pairs. 56318 records in RAM. INFO 2026-06-08 09:29:29 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,786 INFO 2026-06-08 09:29:29 MarkDuplicates Tracking 788268 as yet unmatched pairs. 55579 records in RAM. INFO 2026-06-08 09:29:30 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:7,584,845 INFO 2026-06-08 09:29:30 MarkDuplicates Tracking 785377 as yet unmatched pairs. 52674 records in RAM. INFO 2026-06-08 09:29:32 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:16,146,707 INFO 2026-06-08 09:29:32 MarkDuplicates Tracking 778738 as yet unmatched pairs. 45992 records in RAM. INFO 2026-06-08 09:29:35 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:26,184,027 INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 777817 as yet unmatched pairs. 45015 records in RAM. INFO 2026-06-08 09:29:37 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr6:29,556,292 INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 775343 as yet unmatched pairs. 42506 records in RAM. INFO 2026-06-08 09:29:39 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:30,489,867 INFO 2026-06-08 09:29:39 MarkDuplicates Tracking 776568 as yet unmatched pairs. 43690 records in RAM. INFO 2026-06-08 09:29:40 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:30,986,262 INFO 2026-06-08 09:29:40 MarkDuplicates Tracking 774480 as yet unmatched pairs. 41571 records in RAM. INFO 2026-06-08 09:29:42 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,268,982 INFO 2026-06-08 09:29:42 MarkDuplicates Tracking 773233 as yet unmatched pairs. 40305 records in RAM. INFO 2026-06-08 09:29:44 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,627,874 INFO 2026-06-08 09:29:44 MarkDuplicates Tracking 770453 as yet unmatched pairs. 37481 records in RAM. INFO 2026-06-08 09:29:45 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,850 INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 768154 as yet unmatched pairs. 35156 records in RAM. INFO 2026-06-08 09:29:47 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,027,701 INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 767178 as yet unmatched pairs. 34160 records in RAM. INFO 2026-06-08 09:29:49 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:32,580,800 INFO 2026-06-08 09:29:49 MarkDuplicates Tracking 767233 as yet unmatched pairs. 34176 records in RAM. INFO 2026-06-08 09:29:51 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:32,950,697 INFO 2026-06-08 09:29:51 MarkDuplicates Tracking 763978 as yet unmatched pairs. 30870 records in RAM. INFO 2026-06-08 09:29:52 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:33,315,551 INFO 2026-06-08 09:29:52 MarkDuplicates Tracking 761885 as yet unmatched pairs. 28744 records in RAM. INFO 2026-06-08 09:29:54 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:35,424,526 INFO 2026-06-08 09:29:54 MarkDuplicates Tracking 760962 as yet unmatched pairs. 27791 records in RAM. INFO 2026-06-08 09:29:56 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:41,565,773 INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 758191 as yet unmatched pairs. 24966 records in RAM. INFO 2026-06-08 09:29:58 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr6:43,171,983 INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 757178 as yet unmatched pairs. 23926 records in RAM. INFO 2026-06-08 09:30:00 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr6:46,867,021 INFO 2026-06-08 09:30:00 MarkDuplicates Tracking 754543 as yet unmatched pairs. 21263 records in RAM. INFO 2026-06-08 09:30:02 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:56,618,910 INFO 2026-06-08 09:30:02 MarkDuplicates Tracking 754244 as yet unmatched pairs. 20837 records in RAM. INFO 2026-06-08 09:30:04 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:75,148,403 INFO 2026-06-08 09:30:04 MarkDuplicates Tracking 752411 as yet unmatched pairs. 18944 records in RAM. INFO 2026-06-08 09:30:06 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:89,080,784 INFO 2026-06-08 09:30:06 MarkDuplicates Tracking 751938 as yet unmatched pairs. 18419 records in RAM. INFO 2026-06-08 09:30:08 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:106,520,728 INFO 2026-06-08 09:30:08 MarkDuplicates Tracking 749286 as yet unmatched pairs. 15718 records in RAM. INFO 2026-06-08 09:30:09 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:112,175,368 INFO 2026-06-08 09:30:09 MarkDuplicates Tracking 747249 as yet unmatched pairs. 13645 records in RAM. INFO 2026-06-08 09:30:11 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:124,963,164 INFO 2026-06-08 09:30:11 MarkDuplicates Tracking 745812 as yet unmatched pairs. 12170 records in RAM. INFO 2026-06-08 09:30:13 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:136,383,731 INFO 2026-06-08 09:30:13 MarkDuplicates Tracking 744442 as yet unmatched pairs. 10738 records in RAM. INFO 2026-06-08 09:30:14 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,555 INFO 2026-06-08 09:30:14 MarkDuplicates Tracking 742407 as yet unmatched pairs. 8659 records in RAM. INFO 2026-06-08 09:30:16 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:149,683,603 INFO 2026-06-08 09:30:16 MarkDuplicates Tracking 740456 as yet unmatched pairs. 6673 records in RAM. INFO 2026-06-08 09:30:18 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:157,982,028 INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 738752 as yet unmatched pairs. 4909 records in RAM. INFO 2026-06-08 09:30:20 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:159,256,620 INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 736927 as yet unmatched pairs. 3048 records in RAM. INFO 2026-06-08 09:30:21 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:167,875,339 INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 735589 as yet unmatched pairs. 1667 records in RAM. INFO 2026-06-08 09:30:24 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:1,158,241 INFO 2026-06-08 09:30:24 MarkDuplicates Tracking 733620 as yet unmatched pairs. 40580 records in RAM. INFO 2026-06-08 09:30:25 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,577 INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 732117 as yet unmatched pairs. 39024 records in RAM. INFO 2026-06-08 09:30:28 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,694 INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 734984 as yet unmatched pairs. 41874 records in RAM. INFO 2026-06-08 09:30:30 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr7:8,003,956 INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 727438 as yet unmatched pairs. 34299 records in RAM. INFO 2026-06-08 09:30:32 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:26,200,477 INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 727810 as yet unmatched pairs. 34627 records in RAM. INFO 2026-06-08 09:30:34 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:40,134,433 INFO 2026-06-08 09:30:34 MarkDuplicates Tracking 724621 as yet unmatched pairs. 31373 records in RAM. INFO 2026-06-08 09:30:35 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:44,693,837 INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 723721 as yet unmatched pairs. 30448 records in RAM. INFO 2026-06-08 09:30:37 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:55,160,231 INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 721180 as yet unmatched pairs. 27869 records in RAM. INFO 2026-06-08 09:30:39 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,217 INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 719987 as yet unmatched pairs. 26594 records in RAM. INFO 2026-06-08 09:30:40 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:74,758,804 INFO 2026-06-08 09:30:40 MarkDuplicates Tracking 718247 as yet unmatched pairs. 24841 records in RAM. INFO 2026-06-08 09:30:42 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,873 INFO 2026-06-08 09:30:42 MarkDuplicates Tracking 748107 as yet unmatched pairs. 54682 records in RAM. INFO 2026-06-08 09:30:44 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:76,980,760 INFO 2026-06-08 09:30:44 MarkDuplicates Tracking 714478 as yet unmatched pairs. 21019 records in RAM. INFO 2026-06-08 09:30:45 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:92,579,394 INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 713224 as yet unmatched pairs. 19745 records in RAM. INFO 2026-06-08 09:30:47 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,181 INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 715357 as yet unmatched pairs. 21822 records in RAM. INFO 2026-06-08 09:30:49 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:99,967,051 INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 710133 as yet unmatched pairs. 16552 records in RAM. INFO 2026-06-08 09:30:52 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr7:100,868,214 INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 708188 as yet unmatched pairs. 14574 records in RAM. INFO 2026-06-08 09:30:54 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr7:102,567,874 INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 707999 as yet unmatched pairs. 14352 records in RAM. INFO 2026-06-08 09:30:56 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:107,935,598 INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 706104 as yet unmatched pairs. 12420 records in RAM. INFO 2026-06-08 09:30:58 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:127,588,403 INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 703882 as yet unmatched pairs. 10148 records in RAM. INFO 2026-06-08 09:31:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:128,854,669 INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 703068 as yet unmatched pairs. 9307 records in RAM. INFO 2026-06-08 09:31:01 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:135,604,422 INFO 2026-06-08 09:31:01 MarkDuplicates Tracking 700905 as yet unmatched pairs. 7095 records in RAM. INFO 2026-06-08 09:31:03 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:141,779,085 INFO 2026-06-08 09:31:03 MarkDuplicates Tracking 698926 as yet unmatched pairs. 5090 records in RAM. INFO 2026-06-08 09:31:05 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:148,827,235 INFO 2026-06-08 09:31:05 MarkDuplicates Tracking 697767 as yet unmatched pairs. 3918 records in RAM. INFO 2026-06-08 09:31:06 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:151,082,285 INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 696176 as yet unmatched pairs. 2293 records in RAM. INFO 2026-06-08 09:31:08 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr8:673,340 INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 693899 as yet unmatched pairs. 47720 records in RAM. INFO 2026-06-08 09:31:10 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr8:11,847,804 INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 699969 as yet unmatched pairs. 53756 records in RAM. INFO 2026-06-08 09:31:12 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr8:22,180,433 INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 691156 as yet unmatched pairs. 44908 records in RAM. INFO 2026-06-08 09:31:13 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:26,383,159 INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 690974 as yet unmatched pairs. 44696 records in RAM. INFO 2026-06-08 09:32:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 64s. Last read position: chr8:37,829,917 INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 687633 as yet unmatched pairs. 41321 records in RAM. INFO 2026-06-08 09:32:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:41,609,433 INFO 2026-06-08 09:32:20 MarkDuplicates Tracking 685710 as yet unmatched pairs. 39368 records in RAM. INFO 2026-06-08 09:32:22 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:51,861,075 INFO 2026-06-08 09:32:22 MarkDuplicates Tracking 684548 as yet unmatched pairs. 38159 records in RAM. INFO 2026-06-08 09:32:23 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:67,200,396 INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 682795 as yet unmatched pairs. 36371 records in RAM. INFO 2026-06-08 09:32:25 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:81,280,641 INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 699848 as yet unmatched pairs. 53366 records in RAM. INFO 2026-06-08 09:32:27 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:94,849,932 INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 679789 as yet unmatched pairs. 33289 records in RAM. INFO 2026-06-08 09:32:29 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,695 INFO 2026-06-08 09:32:29 MarkDuplicates Tracking 680756 as yet unmatched pairs. 34222 records in RAM. INFO 2026-06-08 09:32:30 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:103,325,223 INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 677022 as yet unmatched pairs. 30449 records in RAM. INFO 2026-06-08 09:32:32 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:120,310,026 INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 676208 as yet unmatched pairs. 29582 records in RAM. INFO 2026-06-08 09:32:34 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,456 INFO 2026-06-08 09:32:34 MarkDuplicates Tracking 679336 as yet unmatched pairs. 32667 records in RAM. INFO 2026-06-08 09:32:36 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:133,264,638 INFO 2026-06-08 09:32:36 MarkDuplicates Tracking 677790 as yet unmatched pairs. 31092 records in RAM. INFO 2026-06-08 09:32:37 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:142,765,051 INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 675352 as yet unmatched pairs. 28618 records in RAM. INFO 2026-06-08 09:32:39 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,682 INFO 2026-06-08 09:32:39 MarkDuplicates Tracking 669815 as yet unmatched pairs. 23061 records in RAM. INFO 2026-06-08 09:32:41 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,179 INFO 2026-06-08 09:32:41 MarkDuplicates Tracking 668686 as yet unmatched pairs. 21904 records in RAM. INFO 2026-06-08 09:32:42 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,869 INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 665680 as yet unmatched pairs. 18898 records in RAM. INFO 2026-06-08 09:32:43 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,879 INFO 2026-06-08 09:32:43 MarkDuplicates Tracking 670337 as yet unmatched pairs. 23542 records in RAM. INFO 2026-06-08 09:32:44 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,725 INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 670572 as yet unmatched pairs. 23766 records in RAM. INFO 2026-06-08 09:32:45 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,502 INFO 2026-06-08 09:32:45 MarkDuplicates Tracking 662947 as yet unmatched pairs. 16133 records in RAM. INFO 2026-06-08 09:32:46 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,219 INFO 2026-06-08 09:32:46 MarkDuplicates Tracking 665023 as yet unmatched pairs. 18206 records in RAM. INFO 2026-06-08 09:32:48 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr8:143,863,046 INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 677220 as yet unmatched pairs. 30385 records in RAM. INFO 2026-06-08 09:32:51 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 3s. Last read position: chr8:143,863,820 INFO 2026-06-08 09:32:51 MarkDuplicates Tracking 659596 as yet unmatched pairs. 12742 records in RAM. INFO 2026-06-08 09:32:53 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,777 INFO 2026-06-08 09:32:53 MarkDuplicates Tracking 663138 as yet unmatched pairs. 16280 records in RAM. INFO 2026-06-08 09:32:54 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,780 INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 658029 as yet unmatched pairs. 11169 records in RAM. INFO 2026-06-08 09:32:55 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,408 INFO 2026-06-08 09:32:55 MarkDuplicates Tracking 659571 as yet unmatched pairs. 12711 records in RAM. INFO 2026-06-08 09:32:57 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,102 INFO 2026-06-08 09:32:57 MarkDuplicates Tracking 659903 as yet unmatched pairs. 13027 records in RAM. INFO 2026-06-08 09:32:58 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,724 INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 656331 as yet unmatched pairs. 9430 records in RAM. INFO 2026-06-08 09:33:00 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,932,884 INFO 2026-06-08 09:33:00 MarkDuplicates Tracking 654619 as yet unmatched pairs. 7697 records in RAM. INFO 2026-06-08 09:33:02 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:144,318,528 INFO 2026-06-08 09:33:02 MarkDuplicates Tracking 649213 as yet unmatched pairs. 2257 records in RAM. INFO 2026-06-08 09:33:04 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:711,207 INFO 2026-06-08 09:33:04 MarkDuplicates Tracking 651293 as yet unmatched pairs. 45129 records in RAM. INFO 2026-06-08 09:33:06 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:5,743,001 INFO 2026-06-08 09:33:06 MarkDuplicates Tracking 645883 as yet unmatched pairs. 39682 records in RAM. INFO 2026-06-08 09:33:07 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:14,619,644 INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 643924 as yet unmatched pairs. 37576 records in RAM. INFO 2026-06-08 09:33:09 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:32,987,670 INFO 2026-06-08 09:33:09 MarkDuplicates Tracking 642165 as yet unmatched pairs. 35797 records in RAM. INFO 2026-06-08 09:33:10 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:33,462,692 INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 640716 as yet unmatched pairs. 34314 records in RAM. INFO 2026-06-08 09:33:12 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:35,682,028 INFO 2026-06-08 09:33:12 MarkDuplicates Tracking 638689 as yet unmatched pairs. 32242 records in RAM. INFO 2026-06-08 09:33:14 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:40,265,161 INFO 2026-06-08 09:33:14 MarkDuplicates Tracking 636598 as yet unmatched pairs. 30102 records in RAM. INFO 2026-06-08 09:33:16 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:73,162,809 INFO 2026-06-08 09:33:16 MarkDuplicates Tracking 646315 as yet unmatched pairs. 39793 records in RAM. INFO 2026-06-08 09:33:17 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:84,810,568 INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 634265 as yet unmatched pairs. 27721 records in RAM. INFO 2026-06-08 09:33:19 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:92,764,641 INFO 2026-06-08 09:33:19 MarkDuplicates Tracking 632451 as yet unmatched pairs. 25875 records in RAM. INFO 2026-06-08 09:33:21 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:99,044,746 INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 631751 as yet unmatched pairs. 25142 records in RAM. INFO 2026-06-08 09:33:22 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:109,073,392 INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 628755 as yet unmatched pairs. 22115 records in RAM. INFO 2026-06-08 09:33:24 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:114,301,483 INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 627160 as yet unmatched pairs. 20494 records in RAM. INFO 2026-06-08 09:33:26 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:115,073,780 INFO 2026-06-08 09:33:26 MarkDuplicates Tracking 630516 as yet unmatched pairs. 23836 records in RAM. INFO 2026-06-08 09:33:28 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:120,778,427 INFO 2026-06-08 09:33:28 MarkDuplicates Tracking 623849 as yet unmatched pairs. 17141 records in RAM. INFO 2026-06-08 09:33:29 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:124,810,182 INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 621711 as yet unmatched pairs. 14969 records in RAM. INFO 2026-06-08 09:33:31 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:127,788,550 INFO 2026-06-08 09:33:31 MarkDuplicates Tracking 620370 as yet unmatched pairs. 13602 records in RAM. INFO 2026-06-08 09:33:33 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:128,585,789 INFO 2026-06-08 09:33:33 MarkDuplicates Tracking 618816 as yet unmatched pairs. 12019 records in RAM. INFO 2026-06-08 09:33:35 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr9:130,579,725 INFO 2026-06-08 09:33:35 MarkDuplicates Tracking 616211 as yet unmatched pairs. 9390 records in RAM. INFO 2026-06-08 09:33:37 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:132,336,300 INFO 2026-06-08 09:33:37 MarkDuplicates Tracking 614693 as yet unmatched pairs. 7844 records in RAM. INFO 2026-06-08 09:33:38 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:134,786,029 INFO 2026-06-08 09:33:38 MarkDuplicates Tracking 614025 as yet unmatched pairs. 7141 records in RAM. INFO 2026-06-08 09:33:40 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr9:136,515,612 INFO 2026-06-08 09:33:40 MarkDuplicates Tracking 611080 as yet unmatched pairs. 4172 records in RAM. INFO 2026-06-08 09:33:42 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:137,241,302 INFO 2026-06-08 09:33:42 MarkDuplicates Tracking 608272 as yet unmatched pairs. 1331 records in RAM. INFO 2026-06-08 09:33:44 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr10:5,452,388 INFO 2026-06-08 09:33:44 MarkDuplicates Tracking 606412 as yet unmatched pairs. 30090 records in RAM. INFO 2026-06-08 09:33:46 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:5,746,710 INFO 2026-06-08 09:33:46 MarkDuplicates Tracking 604353 as yet unmatched pairs. 28006 records in RAM. INFO 2026-06-08 09:33:48 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:17,230,679 INFO 2026-06-08 09:33:48 MarkDuplicates Tracking 605641 as yet unmatched pairs. 29246 records in RAM. INFO 2026-06-08 09:33:50 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:28,899,011 INFO 2026-06-08 09:33:50 MarkDuplicates Tracking 601000 as yet unmatched pairs. 24566 records in RAM. INFO 2026-06-08 09:33:52 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:33,213,447 INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 600585 as yet unmatched pairs. 24127 records in RAM. INFO 2026-06-08 09:33:53 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:46,011,182 INFO 2026-06-08 09:33:53 MarkDuplicates Tracking 603673 as yet unmatched pairs. 27190 records in RAM. INFO 2026-06-08 09:33:55 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:48,743,176 INFO 2026-06-08 09:33:55 MarkDuplicates Tracking 597538 as yet unmatched pairs. 21034 records in RAM. INFO 2026-06-08 09:33:56 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,039 INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 596293 as yet unmatched pairs. 19748 records in RAM. INFO 2026-06-08 09:33:58 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:71,511,125 INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 594119 as yet unmatched pairs. 17530 records in RAM. INFO 2026-06-08 09:34:00 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:74,043,148 INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 593169 as yet unmatched pairs. 16546 records in RAM. INFO 2026-06-08 09:34:02 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:80,170,865 INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 592144 as yet unmatched pairs. 15455 records in RAM. INFO 2026-06-08 09:34:03 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:89,338,835 INFO 2026-06-08 09:34:03 MarkDuplicates Tracking 590644 as yet unmatched pairs. 13923 records in RAM. INFO 2026-06-08 09:34:05 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:95,842,385 INFO 2026-06-08 09:34:05 MarkDuplicates Tracking 587890 as yet unmatched pairs. 11144 records in RAM. INFO 2026-06-08 09:34:07 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:100,356,541 INFO 2026-06-08 09:34:07 MarkDuplicates Tracking 587817 as yet unmatched pairs. 11040 records in RAM. INFO 2026-06-08 09:34:08 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:102,657,276 INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 584886 as yet unmatched pairs. 8092 records in RAM. INFO 2026-06-08 09:34:10 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:104,064,473 INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 585409 as yet unmatched pairs. 8596 records in RAM. INFO 2026-06-08 09:34:12 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:116,698,688 INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 580885 as yet unmatched pairs. 4035 records in RAM. INFO 2026-06-08 09:34:14 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:122,088,462 INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 579592 as yet unmatched pairs. 2715 records in RAM. INFO 2026-06-08 09:34:15 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:132,405,745 INFO 2026-06-08 09:34:15 MarkDuplicates Tracking 577965 as yet unmatched pairs. 1051 records in RAM. INFO 2026-06-08 09:34:18 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:320,584 INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 589266 as yet unmatched pairs. 71030 records in RAM. INFO 2026-06-08 09:34:19 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:722,691 INFO 2026-06-08 09:34:19 MarkDuplicates Tracking 574361 as yet unmatched pairs. 56105 records in RAM. INFO 2026-06-08 09:34:21 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:1,926,696 INFO 2026-06-08 09:34:21 MarkDuplicates Tracking 573613 as yet unmatched pairs. 55323 records in RAM. INFO 2026-06-08 09:34:23 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:6,223,675 INFO 2026-06-08 09:34:23 MarkDuplicates Tracking 570108 as yet unmatched pairs. 51796 records in RAM. INFO 2026-06-08 09:34:24 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:10,306,343 INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 568223 as yet unmatched pairs. 49887 records in RAM. INFO 2026-06-08 09:34:26 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:17,301,783 INFO 2026-06-08 09:34:26 MarkDuplicates Tracking 566489 as yet unmatched pairs. 48139 records in RAM. INFO 2026-06-08 09:34:28 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:34,076,337 INFO 2026-06-08 09:34:28 MarkDuplicates Tracking 565202 as yet unmatched pairs. 46839 records in RAM. INFO 2026-06-08 09:34:30 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr11:45,915,702 INFO 2026-06-08 09:34:30 MarkDuplicates Tracking 563511 as yet unmatched pairs. 45112 records in RAM. INFO 2026-06-08 09:34:31 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:47,622,688 INFO 2026-06-08 09:34:31 MarkDuplicates Tracking 561653 as yet unmatched pairs. 43237 records in RAM. INFO 2026-06-08 09:34:33 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:57,698,981 INFO 2026-06-08 09:34:33 MarkDuplicates Tracking 561078 as yet unmatched pairs. 42652 records in RAM. INFO 2026-06-08 09:34:35 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:60,903,826 INFO 2026-06-08 09:34:35 MarkDuplicates Tracking 558584 as yet unmatched pairs. 40144 records in RAM. INFO 2026-06-08 09:34:37 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,115 INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 559325 as yet unmatched pairs. 40851 records in RAM. INFO 2026-06-08 09:34:38 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,210 INFO 2026-06-08 09:34:38 MarkDuplicates Tracking 557034 as yet unmatched pairs. 38545 records in RAM. INFO 2026-06-08 09:34:40 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:62,572,646 INFO 2026-06-08 09:34:40 MarkDuplicates Tracking 553832 as yet unmatched pairs. 35319 records in RAM. INFO 2026-06-08 09:34:41 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:63,764,302 INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 552478 as yet unmatched pairs. 33935 records in RAM. INFO 2026-06-08 09:34:43 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr11:64,765,430 INFO 2026-06-08 09:34:43 MarkDuplicates Tracking 550626 as yet unmatched pairs. 32063 records in RAM. INFO 2026-06-08 09:34:45 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:65,210,858 INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 548557 as yet unmatched pairs. 29960 records in RAM. INFO 2026-06-08 09:34:46 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,649,347 INFO 2026-06-08 09:34:46 MarkDuplicates Tracking 546270 as yet unmatched pairs. 27580 records in RAM. INFO 2026-06-08 09:34:49 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr11:66,220,729 INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 543947 as yet unmatched pairs. 25248 records in RAM. INFO 2026-06-08 09:34:51 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:67,070,484 INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 541971 as yet unmatched pairs. 23251 records in RAM. INFO 2026-06-08 09:34:52 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:67,612,381 INFO 2026-06-08 09:34:52 MarkDuplicates Tracking 539287 as yet unmatched pairs. 20558 records in RAM. INFO 2026-06-08 09:34:54 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:70,429,118 INFO 2026-06-08 09:34:54 MarkDuplicates Tracking 537987 as yet unmatched pairs. 19237 records in RAM. INFO 2026-06-08 09:34:56 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,887 INFO 2026-06-08 09:34:56 MarkDuplicates Tracking 535854 as yet unmatched pairs. 17069 records in RAM. INFO 2026-06-08 09:34:58 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:77,323,332 INFO 2026-06-08 09:34:58 MarkDuplicates Tracking 534188 as yet unmatched pairs. 15391 records in RAM. INFO 2026-06-08 09:34:59 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:93,168,075 INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 532010 as yet unmatched pairs. 13182 records in RAM. INFO 2026-06-08 09:35:01 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:102,186,085 INFO 2026-06-08 09:35:01 MarkDuplicates Tracking 531896 as yet unmatched pairs. 13051 records in RAM. INFO 2026-06-08 09:35:03 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:111,908,776 INFO 2026-06-08 09:35:03 MarkDuplicates Tracking 535098 as yet unmatched pairs. 16230 records in RAM. INFO 2026-06-08 09:35:04 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:117,918,456 INFO 2026-06-08 09:35:04 MarkDuplicates Tracking 528905 as yet unmatched pairs. 10019 records in RAM. INFO 2026-06-08 09:35:06 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:118,908,489 INFO 2026-06-08 09:35:06 MarkDuplicates Tracking 525835 as yet unmatched pairs. 6942 records in RAM. INFO 2026-06-08 09:35:08 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:120,118,307 INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 531193 as yet unmatched pairs. 12278 records in RAM. INFO 2026-06-08 09:35:09 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,702 INFO 2026-06-08 09:35:09 MarkDuplicates Tracking 524687 as yet unmatched pairs. 5748 records in RAM. INFO 2026-06-08 09:35:11 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:128,694,101 INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 520741 as yet unmatched pairs. 1794 records in RAM. INFO 2026-06-08 09:35:14 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr12:355,206 INFO 2026-06-08 09:35:14 MarkDuplicates Tracking 519068 as yet unmatched pairs. 79416 records in RAM. INFO 2026-06-08 09:35:15 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:2,801,347 INFO 2026-06-08 09:35:15 MarkDuplicates Tracking 518433 as yet unmatched pairs. 78761 records in RAM. INFO 2026-06-08 09:35:17 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:6,386,405 INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 516333 as yet unmatched pairs. 76619 records in RAM. INFO 2026-06-08 09:35:19 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:6,936,300 INFO 2026-06-08 09:35:19 MarkDuplicates Tracking 514318 as yet unmatched pairs. 74585 records in RAM. INFO 2026-06-08 09:35:21 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:7,487,629 INFO 2026-06-08 09:35:21 MarkDuplicates Tracking 512528 as yet unmatched pairs. 72777 records in RAM. INFO 2026-06-08 09:35:22 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,236 INFO 2026-06-08 09:35:22 MarkDuplicates Tracking 512280 as yet unmatched pairs. 72526 records in RAM. INFO 2026-06-08 09:35:24 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:13,213,757 INFO 2026-06-08 09:35:24 MarkDuplicates Tracking 513703 as yet unmatched pairs. 73931 records in RAM. INFO 2026-06-08 09:35:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:26,964,651 INFO 2026-06-08 09:35:26 MarkDuplicates Tracking 507598 as yet unmatched pairs. 67798 records in RAM. INFO 2026-06-08 09:35:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:43,800,498 INFO 2026-06-08 09:35:28 MarkDuplicates Tracking 507103 as yet unmatched pairs. 67277 records in RAM. INFO 2026-06-08 09:35:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr12:48,694,410 INFO 2026-06-08 09:35:30 MarkDuplicates Tracking 504563 as yet unmatched pairs. 64708 records in RAM. INFO 2026-06-08 09:35:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,538 INFO 2026-06-08 09:35:31 MarkDuplicates Tracking 503627 as yet unmatched pairs. 63758 records in RAM. INFO 2026-06-08 09:35:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:49,792,483 INFO 2026-06-08 09:35:33 MarkDuplicates Tracking 501420 as yet unmatched pairs. 61544 records in RAM. INFO 2026-06-08 09:35:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,726 INFO 2026-06-08 09:35:35 MarkDuplicates Tracking 503629 as yet unmatched pairs. 63730 records in RAM. INFO 2026-06-08 09:35:37 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:52,447,307 INFO 2026-06-08 09:35:37 MarkDuplicates Tracking 533174 as yet unmatched pairs. 93242 records in RAM. INFO 2026-06-08 09:35:39 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:52,448,920 INFO 2026-06-08 09:35:39 MarkDuplicates Tracking 511304 as yet unmatched pairs. 71351 records in RAM. INFO 2026-06-08 09:35:40 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,617 INFO 2026-06-08 09:35:40 MarkDuplicates Tracking 522653 as yet unmatched pairs. 82690 records in RAM. INFO 2026-06-08 09:35:42 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,776 INFO 2026-06-08 09:35:42 MarkDuplicates Tracking 538481 as yet unmatched pairs. 98518 records in RAM. INFO 2026-06-08 09:35:43 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,985 INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 502345 as yet unmatched pairs. 62360 records in RAM. INFO 2026-06-08 09:35:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:52,470,505 INFO 2026-06-08 09:35:45 MarkDuplicates Tracking 506876 as yet unmatched pairs. 66879 records in RAM. INFO 2026-06-08 09:35:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,275 INFO 2026-06-08 09:35:46 MarkDuplicates Tracking 506160 as yet unmatched pairs. 66141 records in RAM. INFO 2026-06-08 09:35:47 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,418 INFO 2026-06-08 09:35:47 MarkDuplicates Tracking 504689 as yet unmatched pairs. 64667 records in RAM. INFO 2026-06-08 09:35:49 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,650 INFO 2026-06-08 09:35:49 MarkDuplicates Tracking 497260 as yet unmatched pairs. 57237 records in RAM. INFO 2026-06-08 09:35:50 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:52,487,881 INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 571741 as yet unmatched pairs. 131679 records in RAM. INFO 2026-06-08 09:35:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:52,488,408 INFO 2026-06-08 09:35:52 MarkDuplicates Tracking 551824 as yet unmatched pairs. 111736 records in RAM. INFO 2026-06-08 09:35:54 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:52,490,631 INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 542286 as yet unmatched pairs. 102181 records in RAM. INFO 2026-06-08 09:35:55 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:52,491,634 INFO 2026-06-08 09:35:55 MarkDuplicates Tracking 513353 as yet unmatched pairs. 73221 records in RAM. INFO 2026-06-08 09:35:57 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,826 INFO 2026-06-08 09:35:57 MarkDuplicates Tracking 547973 as yet unmatched pairs. 107829 records in RAM. INFO 2026-06-08 09:35:59 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,934 INFO 2026-06-08 09:35:59 MarkDuplicates Tracking 561058 as yet unmatched pairs. 120890 records in RAM. INFO 2026-06-08 09:36:01 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:52,493,128 INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 479573 as yet unmatched pairs. 39373 records in RAM. INFO 2026-06-08 09:36:02 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:52,517,114 INFO 2026-06-08 09:36:02 MarkDuplicates Tracking 498439 as yet unmatched pairs. 58198 records in RAM. INFO 2026-06-08 09:36:04 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,869 INFO 2026-06-08 09:36:04 MarkDuplicates Tracking 501560 as yet unmatched pairs. 61294 records in RAM. INFO 2026-06-08 09:36:06 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:52,678,189 INFO 2026-06-08 09:36:06 MarkDuplicates Tracking 479813 as yet unmatched pairs. 39533 records in RAM. INFO 2026-06-08 09:36:07 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:53,170,080 INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 472664 as yet unmatched pairs. 32371 records in RAM. INFO 2026-06-08 09:36:09 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,862 INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 474070 as yet unmatched pairs. 33763 records in RAM. INFO 2026-06-08 09:36:11 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:55,940,421 INFO 2026-06-08 09:36:11 MarkDuplicates Tracking 470625 as yet unmatched pairs. 30299 records in RAM. INFO 2026-06-08 09:36:13 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,321 INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 468038 as yet unmatched pairs. 27693 records in RAM. INFO 2026-06-08 09:36:14 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,544 INFO 2026-06-08 09:36:14 MarkDuplicates Tracking 467278 as yet unmatched pairs. 26912 records in RAM. INFO 2026-06-08 09:36:16 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,143,744 INFO 2026-06-08 09:36:16 MarkDuplicates Tracking 466041 as yet unmatched pairs. 25667 records in RAM. INFO 2026-06-08 09:36:18 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:57,488,138 INFO 2026-06-08 09:36:18 MarkDuplicates Tracking 465305 as yet unmatched pairs. 24920 records in RAM. INFO 2026-06-08 09:36:20 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:62,801,817 INFO 2026-06-08 09:36:20 MarkDuplicates Tracking 461198 as yet unmatched pairs. 20801 records in RAM. INFO 2026-06-08 09:36:21 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:69,239,690 INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 460450 as yet unmatched pairs. 20012 records in RAM. INFO 2026-06-08 09:36:23 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:76,764,278 INFO 2026-06-08 09:36:23 MarkDuplicates Tracking 458310 as yet unmatched pairs. 17850 records in RAM. INFO 2026-06-08 09:36:25 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:95,474,197 INFO 2026-06-08 09:36:25 MarkDuplicates Tracking 457059 as yet unmatched pairs. 16568 records in RAM. INFO 2026-06-08 09:36:26 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,638 INFO 2026-06-08 09:36:26 MarkDuplicates Tracking 456037 as yet unmatched pairs. 15530 records in RAM. INFO 2026-06-08 09:36:28 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:109,534,730 INFO 2026-06-08 09:36:28 MarkDuplicates Tracking 453694 as yet unmatched pairs. 13161 records in RAM. INFO 2026-06-08 09:36:30 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,451 INFO 2026-06-08 09:36:30 MarkDuplicates Tracking 451869 as yet unmatched pairs. 11321 records in RAM. INFO 2026-06-08 09:36:32 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:112,978,672 INFO 2026-06-08 09:36:32 MarkDuplicates Tracking 453234 as yet unmatched pairs. 12676 records in RAM. INFO 2026-06-08 09:36:33 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:119,193,764 INFO 2026-06-08 09:36:33 MarkDuplicates Tracking 449100 as yet unmatched pairs. 8507 records in RAM. INFO 2026-06-08 09:36:35 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:121,318,604 INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 447090 as yet unmatched pairs. 6468 records in RAM. INFO 2026-06-08 09:36:37 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:122,981,847 INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 446804 as yet unmatched pairs. 6171 records in RAM. INFO 2026-06-08 09:36:38 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:127,568,886 INFO 2026-06-08 09:36:38 MarkDuplicates Tracking 443286 as yet unmatched pairs. 2627 records in RAM. INFO 2026-06-08 09:36:40 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:132,796,646 INFO 2026-06-08 09:36:40 MarkDuplicates Tracking 441318 as yet unmatched pairs. 638 records in RAM. INFO 2026-06-08 09:36:42 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr13:20,189,008 INFO 2026-06-08 09:36:42 MarkDuplicates Tracking 451404 as yet unmatched pairs. 24180 records in RAM. INFO 2026-06-08 09:36:44 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr13:26,349,075 INFO 2026-06-08 09:36:44 MarkDuplicates Tracking 437972 as yet unmatched pairs. 10730 records in RAM. INFO 2026-06-08 09:36:45 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr13:39,601,024 INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 436981 as yet unmatched pairs. 9717 records in RAM. INFO 2026-06-08 09:36:47 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr13:48,233,438 INFO 2026-06-08 09:36:47 MarkDuplicates Tracking 440389 as yet unmatched pairs. 13091 records in RAM. INFO 2026-06-08 09:36:49 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr13:75,804,431 INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 433413 as yet unmatched pairs. 6079 records in RAM. INFO 2026-06-08 09:36:50 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr13:97,997,520 INFO 2026-06-08 09:36:50 MarkDuplicates Tracking 432271 as yet unmatched pairs. 4917 records in RAM. INFO 2026-06-08 09:36:52 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr13:110,205,506 INFO 2026-06-08 09:36:52 MarkDuplicates Tracking 430032 as yet unmatched pairs. 2658 records in RAM. INFO 2026-06-08 09:36:54 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr13:113,406,027 INFO 2026-06-08 09:36:54 MarkDuplicates Tracking 428201 as yet unmatched pairs. 797 records in RAM. INFO 2026-06-08 09:36:56 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr14:21,363,239 INFO 2026-06-08 09:36:56 MarkDuplicates Tracking 426364 as yet unmatched pairs. 33871 records in RAM. INFO 2026-06-08 09:36:57 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:23,079,613 INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 424960 as yet unmatched pairs. 32449 records in RAM. INFO 2026-06-08 09:36:59 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:24,165,919 INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 424634 as yet unmatched pairs. 32108 records in RAM. INFO 2026-06-08 09:37:01 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:24,325,826 INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 421004 as yet unmatched pairs. 28455 records in RAM. INFO 2026-06-08 09:37:02 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:35,292,515 INFO 2026-06-08 09:37:02 MarkDuplicates Tracking 420878 as yet unmatched pairs. 28310 records in RAM. INFO 2026-06-08 09:37:04 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,578 INFO 2026-06-08 09:37:04 MarkDuplicates Tracking 419867 as yet unmatched pairs. 27160 records in RAM. INFO 2026-06-08 09:37:06 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:54,902,539 INFO 2026-06-08 09:37:06 MarkDuplicates Tracking 416072 as yet unmatched pairs. 23300 records in RAM. INFO 2026-06-08 09:37:08 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:63,204,993 INFO 2026-06-08 09:37:08 MarkDuplicates Tracking 414632 as yet unmatched pairs. 21839 records in RAM. INFO 2026-06-08 09:37:10 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr14:67,571,846 INFO 2026-06-08 09:37:10 MarkDuplicates Tracking 412755 as yet unmatched pairs. 19949 records in RAM. INFO 2026-06-08 09:37:11 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:70,800,901 INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 411368 as yet unmatched pairs. 18531 records in RAM. INFO 2026-06-08 09:37:13 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:74,552,231 INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 409913 as yet unmatched pairs. 17060 records in RAM. INFO 2026-06-08 09:37:15 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr14:77,459,711 INFO 2026-06-08 09:37:15 MarkDuplicates Tracking 407923 as yet unmatched pairs. 15057 records in RAM. INFO 2026-06-08 09:37:17 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:92,000,098 INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 405641 as yet unmatched pairs. 12744 records in RAM. INFO 2026-06-08 09:37:20 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr14:95,103,453 INFO 2026-06-08 09:37:20 MarkDuplicates Tracking 404586 as yet unmatched pairs. 11667 records in RAM. INFO 2026-06-08 09:37:22 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:101,994,763 INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 402758 as yet unmatched pairs. 9821 records in RAM. INFO 2026-06-08 09:37:24 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:103,133,482 INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 401090 as yet unmatched pairs. 8132 records in RAM. INFO 2026-06-08 09:37:25 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:104,940,273 INFO 2026-06-08 09:37:25 MarkDuplicates Tracking 399539 as yet unmatched pairs. 6567 records in RAM. INFO 2026-06-08 09:37:27 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,494 INFO 2026-06-08 09:37:27 MarkDuplicates Tracking 405834 as yet unmatched pairs. 12854 records in RAM. INFO 2026-06-08 09:37:29 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,975 INFO 2026-06-08 09:37:29 MarkDuplicates Tracking 399916 as yet unmatched pairs. 6924 records in RAM. INFO 2026-06-08 09:37:30 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,509 INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 398245 as yet unmatched pairs. 5241 records in RAM. INFO 2026-06-08 09:37:32 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:28,115,519 INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 392890 as yet unmatched pairs. 27202 records in RAM. INFO 2026-06-08 09:37:34 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:33,153,202 INFO 2026-06-08 09:37:34 MarkDuplicates Tracking 391039 as yet unmatched pairs. 25340 records in RAM. INFO 2026-06-08 09:37:35 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:40,105,916 INFO 2026-06-08 09:37:35 MarkDuplicates Tracking 389580 as yet unmatched pairs. 23869 records in RAM. INFO 2026-06-08 09:37:37 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:41,953,844 INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 388204 as yet unmatched pairs. 22473 records in RAM. INFO 2026-06-08 09:37:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:43,694,039 INFO 2026-06-08 09:37:39 MarkDuplicates Tracking 386591 as yet unmatched pairs. 20851 records in RAM. INFO 2026-06-08 09:37:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr15:45,142,036 INFO 2026-06-08 09:37:41 MarkDuplicates Tracking 385869 as yet unmatched pairs. 20110 records in RAM. INFO 2026-06-08 09:37:43 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:52,046,476 INFO 2026-06-08 09:37:43 MarkDuplicates Tracking 383715 as yet unmatched pairs. 17945 records in RAM. INFO 2026-06-08 09:37:44 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,119 INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 382680 as yet unmatched pairs. 16902 records in RAM. INFO 2026-06-08 09:37:46 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:64,675,598 INFO 2026-06-08 09:37:46 MarkDuplicates Tracking 380032 as yet unmatched pairs. 14234 records in RAM. INFO 2026-06-08 09:37:48 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:70,095,578 INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 378931 as yet unmatched pairs. 13103 records in RAM. INFO 2026-06-08 09:37:49 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:74,023,022 INFO 2026-06-08 09:37:49 MarkDuplicates Tracking 377745 as yet unmatched pairs. 11903 records in RAM. INFO 2026-06-08 09:37:51 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:75,356,416 INFO 2026-06-08 09:37:51 MarkDuplicates Tracking 374895 as yet unmatched pairs. 9031 records in RAM. INFO 2026-06-08 09:37:53 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:79,313,807 INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 372428 as yet unmatched pairs. 6562 records in RAM. INFO 2026-06-08 09:37:54 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,299 INFO 2026-06-08 09:37:54 MarkDuplicates Tracking 371209 as yet unmatched pairs. 5330 records in RAM. INFO 2026-06-08 09:37:56 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:90,068,298 INFO 2026-06-08 09:37:56 MarkDuplicates Tracking 369232 as yet unmatched pairs. 3340 records in RAM. INFO 2026-06-08 09:37:58 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:94,356,277 INFO 2026-06-08 09:37:58 MarkDuplicates Tracking 367108 as yet unmatched pairs. 1197 records in RAM. INFO 2026-06-08 09:38:00 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr16:547,210 INFO 2026-06-08 09:38:00 MarkDuplicates Tracking 365905 as yet unmatched pairs. 48232 records in RAM. INFO 2026-06-08 09:38:02 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:1,494,266 INFO 2026-06-08 09:38:02 MarkDuplicates Tracking 363335 as yet unmatched pairs. 45650 records in RAM. INFO 2026-06-08 09:38:04 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:2,111,015 INFO 2026-06-08 09:38:04 MarkDuplicates Tracking 360968 as yet unmatched pairs. 43272 records in RAM. INFO 2026-06-08 09:38:06 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr16:2,764,943 INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 359068 as yet unmatched pairs. 41357 records in RAM. INFO 2026-06-08 09:38:08 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:3,413,053 INFO 2026-06-08 09:38:08 MarkDuplicates Tracking 356708 as yet unmatched pairs. 38987 records in RAM. INFO 2026-06-08 09:38:09 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:4,884,295 INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 356660 as yet unmatched pairs. 38927 records in RAM. INFO 2026-06-08 09:38:11 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:10,915,622 INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 353877 as yet unmatched pairs. 36129 records in RAM. INFO 2026-06-08 09:38:13 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:14,926,183 INFO 2026-06-08 09:38:13 MarkDuplicates Tracking 351637 as yet unmatched pairs. 33869 records in RAM. INFO 2026-06-08 09:38:14 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:16,324,888 INFO 2026-06-08 09:38:14 MarkDuplicates Tracking 350641 as yet unmatched pairs. 32861 records in RAM. INFO 2026-06-08 09:38:15 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,044 INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 351571 as yet unmatched pairs. 33782 records in RAM. INFO 2026-06-08 09:38:17 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:21,453,045 INFO 2026-06-08 09:38:17 MarkDuplicates Tracking 348714 as yet unmatched pairs. 30916 records in RAM. INFO 2026-06-08 09:38:18 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,651 INFO 2026-06-08 09:38:18 MarkDuplicates Tracking 347697 as yet unmatched pairs. 29893 records in RAM. INFO 2026-06-08 09:38:20 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:27,363,569 INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 347338 as yet unmatched pairs. 29525 records in RAM. INFO 2026-06-08 09:38:21 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,836,789 INFO 2026-06-08 09:38:21 MarkDuplicates Tracking 345327 as yet unmatched pairs. 27506 records in RAM. INFO 2026-06-08 09:38:23 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:29,551,285 INFO 2026-06-08 09:38:23 MarkDuplicates Tracking 344232 as yet unmatched pairs. 26406 records in RAM. INFO 2026-06-08 09:38:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,187,995 INFO 2026-06-08 09:38:24 MarkDuplicates Tracking 342769 as yet unmatched pairs. 24924 records in RAM. INFO 2026-06-08 09:38:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,882 INFO 2026-06-08 09:38:26 MarkDuplicates Tracking 341660 as yet unmatched pairs. 23809 records in RAM. INFO 2026-06-08 09:38:28 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,135 INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 341862 as yet unmatched pairs. 24004 records in RAM. INFO 2026-06-08 09:38:29 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:50,304,382 INFO 2026-06-08 09:38:29 MarkDuplicates Tracking 337660 as yet unmatched pairs. 19797 records in RAM. INFO 2026-06-08 09:38:31 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,277 INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 340005 as yet unmatched pairs. 22126 records in RAM. INFO 2026-06-08 09:38:33 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:58,115,320 INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 333617 as yet unmatched pairs. 15721 records in RAM. INFO 2026-06-08 09:38:35 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:67,280,191 INFO 2026-06-08 09:38:35 MarkDuplicates Tracking 331604 as yet unmatched pairs. 13682 records in RAM. INFO 2026-06-08 09:38:36 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:68,676,448 INFO 2026-06-08 09:38:36 MarkDuplicates Tracking 332062 as yet unmatched pairs. 14124 records in RAM. INFO 2026-06-08 09:38:38 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:70,259,114 INFO 2026-06-08 09:38:38 MarkDuplicates Tracking 328484 as yet unmatched pairs. 10535 records in RAM. INFO 2026-06-08 09:38:40 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:74,893,731 INFO 2026-06-08 09:38:40 MarkDuplicates Tracking 326374 as yet unmatched pairs. 8409 records in RAM. INFO 2026-06-08 09:38:41 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:84,179,558 INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 324521 as yet unmatched pairs. 6537 records in RAM. INFO 2026-06-08 09:38:44 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chr16:88,432,571 INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 322561 as yet unmatched pairs. 4535 records in RAM. INFO 2026-06-08 09:38:46 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr16:89,280,883 INFO 2026-06-08 09:38:46 MarkDuplicates Tracking 320435 as yet unmatched pairs. 2397 records in RAM. INFO 2026-06-08 09:38:49 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr17:714,630 INFO 2026-06-08 09:38:49 MarkDuplicates Tracking 318030 as yet unmatched pairs. 119176 records in RAM. INFO 2026-06-08 09:38:51 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:1,662,132 INFO 2026-06-08 09:38:51 MarkDuplicates Tracking 317545 as yet unmatched pairs. 118685 records in RAM. INFO 2026-06-08 09:38:52 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:3,728,137 INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 314297 as yet unmatched pairs. 115426 records in RAM. INFO 2026-06-08 09:38:54 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:4,891,088 INFO 2026-06-08 09:38:54 MarkDuplicates Tracking 313570 as yet unmatched pairs. 114688 records in RAM. INFO 2026-06-08 09:38:56 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:6,620,917 INFO 2026-06-08 09:38:56 MarkDuplicates Tracking 310832 as yet unmatched pairs. 111946 records in RAM. INFO 2026-06-08 09:38:58 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:7,343,889 INFO 2026-06-08 09:38:58 MarkDuplicates Tracking 309091 as yet unmatched pairs. 110197 records in RAM. INFO 2026-06-08 09:38:59 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,713 INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 309419 as yet unmatched pairs. 110522 records in RAM. INFO 2026-06-08 09:39:01 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:8,238,447 INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 305687 as yet unmatched pairs. 106786 records in RAM. INFO 2026-06-08 09:39:03 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:10,525,586 INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 305550 as yet unmatched pairs. 106637 records in RAM. INFO 2026-06-08 09:39:05 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:16,117,901 INFO 2026-06-08 09:39:05 MarkDuplicates Tracking 302396 as yet unmatched pairs. 103482 records in RAM. INFO 2026-06-08 09:39:06 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,823,597 INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 301142 as yet unmatched pairs. 102219 records in RAM. INFO 2026-06-08 09:39:08 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:19,003,721 INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 301087 as yet unmatched pairs. 102162 records in RAM. INFO 2026-06-08 09:39:09 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:27,646,547 INFO 2026-06-08 09:39:09 MarkDuplicates Tracking 299367 as yet unmatched pairs. 100437 records in RAM. INFO 2026-06-08 09:39:11 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:29,204,196 INFO 2026-06-08 09:39:11 MarkDuplicates Tracking 296072 as yet unmatched pairs. 97137 records in RAM. INFO 2026-06-08 09:39:13 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:32,605,088 INFO 2026-06-08 09:39:13 MarkDuplicates Tracking 294917 as yet unmatched pairs. 95967 records in RAM. INFO 2026-06-08 09:39:15 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:36,486,702 INFO 2026-06-08 09:39:15 MarkDuplicates Tracking 293057 as yet unmatched pairs. 94105 records in RAM. INFO 2026-06-08 09:39:16 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:38,724,835 INFO 2026-06-08 09:39:16 MarkDuplicates Tracking 292282 as yet unmatched pairs. 93321 records in RAM. INFO 2026-06-08 09:39:18 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr17:39,725,177 INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 291417 as yet unmatched pairs. 92448 records in RAM. INFO 2026-06-08 09:39:20 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:40,645,576 INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 287774 as yet unmatched pairs. 88796 records in RAM. INFO 2026-06-08 09:39:22 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:41,505,422 INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 291689 as yet unmatched pairs. 92711 records in RAM. INFO 2026-06-08 09:39:24 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,094 INFO 2026-06-08 09:39:24 MarkDuplicates Tracking 367762 as yet unmatched pairs. 168782 records in RAM. INFO 2026-06-08 09:39:25 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,397 INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 384995 as yet unmatched pairs. 186008 records in RAM. INFO 2026-06-08 09:39:27 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,778 INFO 2026-06-08 09:39:27 MarkDuplicates Tracking 327460 as yet unmatched pairs. 128463 records in RAM. INFO 2026-06-08 09:39:29 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:41,584,272 INFO 2026-06-08 09:39:29 MarkDuplicates Tracking 353599 as yet unmatched pairs. 154599 records in RAM. INFO 2026-06-08 09:39:31 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:41,586,372 INFO 2026-06-08 09:39:31 MarkDuplicates Tracking 350561 as yet unmatched pairs. 151558 records in RAM. INFO 2026-06-08 09:39:32 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:41,586,601 INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 312733 as yet unmatched pairs. 113723 records in RAM. INFO 2026-06-08 09:39:35 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr17:41,609,877 INFO 2026-06-08 09:39:35 MarkDuplicates Tracking 315105 as yet unmatched pairs. 116086 records in RAM. INFO 2026-06-08 09:39:37 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr17:41,610,419 INFO 2026-06-08 09:39:37 MarkDuplicates Tracking 335265 as yet unmatched pairs. 136242 records in RAM. INFO 2026-06-08 09:39:39 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr17:41,611,183 INFO 2026-06-08 09:39:39 MarkDuplicates Tracking 295450 as yet unmatched pairs. 96417 records in RAM. INFO 2026-06-08 09:39:41 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:41,612,195 INFO 2026-06-08 09:39:41 MarkDuplicates Tracking 348060 as yet unmatched pairs. 149022 records in RAM. INFO 2026-06-08 09:40:39 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 58s. Last read position: chr17:41,612,325 INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 307738 as yet unmatched pairs. 108700 records in RAM. INFO 2026-06-08 09:41:55 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 76s. Last read position: chr17:41,612,595 INFO 2026-06-08 09:41:55 MarkDuplicates Tracking 286567 as yet unmatched pairs. 87518 records in RAM. INFO 2026-06-08 09:41:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,582 INFO 2026-06-08 09:41:57 MarkDuplicates Tracking 299201 as yet unmatched pairs. 100149 records in RAM. INFO 2026-06-08 09:41:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:41,620,977 INFO 2026-06-08 09:41:59 MarkDuplicates Tracking 306400 as yet unmatched pairs. 107341 records in RAM. INFO 2026-06-08 09:42:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:41,622,381 INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 332340 as yet unmatched pairs. 133265 records in RAM. INFO 2026-06-08 09:42:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:41,624,130 INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 315216 as yet unmatched pairs. 116137 records in RAM. INFO 2026-06-08 09:42:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:41,624,351 INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 361989 as yet unmatched pairs. 162903 records in RAM. INFO 2026-06-08 09:42:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:41,758,427 INFO 2026-06-08 09:42:05 MarkDuplicates Tracking 256134 as yet unmatched pairs. 57043 records in RAM. INFO 2026-06-08 09:42:07 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:42,192,435 INFO 2026-06-08 09:42:07 MarkDuplicates Tracking 248935 as yet unmatched pairs. 49827 records in RAM. INFO 2026-06-08 09:42:09 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr17:43,002,696 INFO 2026-06-08 09:42:09 MarkDuplicates Tracking 247164 as yet unmatched pairs. 48046 records in RAM. INFO 2026-06-08 09:42:11 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:44,400,930 INFO 2026-06-08 09:42:11 MarkDuplicates Tracking 245187 as yet unmatched pairs. 46056 records in RAM. INFO 2026-06-08 09:42:12 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:46,548,319 INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 243557 as yet unmatched pairs. 44420 records in RAM. INFO 2026-06-08 09:42:14 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:49,405,168 INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 242540 as yet unmatched pairs. 43391 records in RAM. INFO 2026-06-08 09:42:15 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,791 INFO 2026-06-08 09:42:15 MarkDuplicates Tracking 249027 as yet unmatched pairs. 49866 records in RAM. INFO 2026-06-08 09:42:17 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,539 INFO 2026-06-08 09:42:17 MarkDuplicates Tracking 273140 as yet unmatched pairs. 73973 records in RAM. INFO 2026-06-08 09:42:19 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,518 INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 278787 as yet unmatched pairs. 79604 records in RAM. INFO 2026-06-08 09:42:21 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,888 INFO 2026-06-08 09:42:21 MarkDuplicates Tracking 266731 as yet unmatched pairs. 67544 records in RAM. INFO 2026-06-08 09:42:23 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,798 INFO 2026-06-08 09:42:23 MarkDuplicates Tracking 291287 as yet unmatched pairs. 92097 records in RAM. INFO 2026-06-08 09:42:25 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,430 INFO 2026-06-08 09:42:25 MarkDuplicates Tracking 281927 as yet unmatched pairs. 82729 records in RAM. INFO 2026-06-08 09:42:27 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,599 INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 288108 as yet unmatched pairs. 88905 records in RAM. INFO 2026-06-08 09:42:29 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,009 INFO 2026-06-08 09:42:29 MarkDuplicates Tracking 283253 as yet unmatched pairs. 84042 records in RAM. INFO 2026-06-08 09:42:31 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,273 INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 258134 as yet unmatched pairs. 58916 records in RAM. INFO 2026-06-08 09:42:32 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:51,166,480 INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 224468 as yet unmatched pairs. 25241 records in RAM. INFO 2026-06-08 09:42:34 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:59,677,150 INFO 2026-06-08 09:42:34 MarkDuplicates Tracking 224705 as yet unmatched pairs. 25472 records in RAM. INFO 2026-06-08 09:42:36 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:63,421,849 INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 219251 as yet unmatched pairs. 20009 records in RAM. INFO 2026-06-08 09:42:37 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:65,014,369 INFO 2026-06-08 09:42:37 MarkDuplicates Tracking 217787 as yet unmatched pairs. 18542 records in RAM. INFO 2026-06-08 09:42:39 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:73,205,551 INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 215919 as yet unmatched pairs. 16661 records in RAM. INFO 2026-06-08 09:42:40 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:75,616,899 INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 214101 as yet unmatched pairs. 14837 records in RAM. INFO 2026-06-08 09:42:43 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr17:76,007,416 INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 212329 as yet unmatched pairs. 13051 records in RAM. INFO 2026-06-08 09:42:44 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:77,340,245 INFO 2026-06-08 09:42:44 MarkDuplicates Tracking 210083 as yet unmatched pairs. 10795 records in RAM. INFO 2026-06-08 09:42:45 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:78,974,776 INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 210190 as yet unmatched pairs. 10894 records in RAM. INFO 2026-06-08 09:42:47 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,938 INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 206568 as yet unmatched pairs. 7258 records in RAM. INFO 2026-06-08 09:42:49 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,297 INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 203692 as yet unmatched pairs. 4379 records in RAM. INFO 2026-06-08 09:42:50 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:82,012,257 INFO 2026-06-08 09:42:50 MarkDuplicates Tracking 202140 as yet unmatched pairs. 2811 records in RAM. INFO 2026-06-08 09:42:52 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:82,927,899 INFO 2026-06-08 09:42:52 MarkDuplicates Tracking 199925 as yet unmatched pairs. 585 records in RAM. INFO 2026-06-08 09:42:54 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr18:9,583,230 INFO 2026-06-08 09:42:54 MarkDuplicates Tracking 199164 as yet unmatched pairs. 15483 records in RAM. INFO 2026-06-08 09:42:56 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr18:23,467,501 INFO 2026-06-08 09:42:56 MarkDuplicates Tracking 196076 as yet unmatched pairs. 12387 records in RAM. INFO 2026-06-08 09:42:58 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr18:31,068,031 INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 199095 as yet unmatched pairs. 15406 records in RAM. INFO 2026-06-08 09:43:00 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:31,318,311 INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 196950 as yet unmatched pairs. 13248 records in RAM. INFO 2026-06-08 09:43:01 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr18:31,461,291 INFO 2026-06-08 09:43:01 MarkDuplicates Tracking 196316 as yet unmatched pairs. 12608 records in RAM. INFO 2026-06-08 09:43:03 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr18:36,111,234 INFO 2026-06-08 09:43:03 MarkDuplicates Tracking 190344 as yet unmatched pairs. 6630 records in RAM. INFO 2026-06-08 09:43:05 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr18:50,286,820 INFO 2026-06-08 09:43:05 MarkDuplicates Tracking 188112 as yet unmatched pairs. 4386 records in RAM. INFO 2026-06-08 09:43:06 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr18:62,717,131 INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 186635 as yet unmatched pairs. 2899 records in RAM. INFO 2026-06-08 09:43:08 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr18:74,631,066 INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 184916 as yet unmatched pairs. 1175 records in RAM. INFO 2026-06-08 09:43:10 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 2s. Last read position: chr19:810,736 INFO 2026-06-08 09:43:10 MarkDuplicates Tracking 183020 as yet unmatched pairs. 78018 records in RAM. INFO 2026-06-08 09:43:12 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,388 INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 181326 as yet unmatched pairs. 76320 records in RAM. INFO 2026-06-08 09:43:13 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:2,073,401 INFO 2026-06-08 09:43:13 MarkDuplicates Tracking 178345 as yet unmatched pairs. 73335 records in RAM. INFO 2026-06-08 09:43:15 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:3,544,629 INFO 2026-06-08 09:43:15 MarkDuplicates Tracking 176578 as yet unmatched pairs. 71559 records in RAM. INFO 2026-06-08 09:43:17 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:4,839,481 INFO 2026-06-08 09:43:17 MarkDuplicates Tracking 175189 as yet unmatched pairs. 70167 records in RAM. INFO 2026-06-08 09:43:19 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr19:6,426,470 INFO 2026-06-08 09:43:19 MarkDuplicates Tracking 171392 as yet unmatched pairs. 66366 records in RAM. INFO 2026-06-08 09:43:21 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:8,311,487 INFO 2026-06-08 09:43:21 MarkDuplicates Tracking 169848 as yet unmatched pairs. 64815 records in RAM. INFO 2026-06-08 09:43:23 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,151,449 INFO 2026-06-08 09:43:23 MarkDuplicates Tracking 167415 as yet unmatched pairs. 62377 records in RAM. INFO 2026-06-08 09:43:24 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:10,991,187 INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 165874 as yet unmatched pairs. 60825 records in RAM. INFO 2026-06-08 09:43:26 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:12,701,183 INFO 2026-06-08 09:43:26 MarkDuplicates Tracking 163791 as yet unmatched pairs. 58734 records in RAM. INFO 2026-06-08 09:43:27 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:13,751,790 INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 161893 as yet unmatched pairs. 56836 records in RAM. INFO 2026-06-08 09:43:29 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:14,518,199 INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 159935 as yet unmatched pairs. 54874 records in RAM. INFO 2026-06-08 09:43:30 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:15,256,964 INFO 2026-06-08 09:43:30 MarkDuplicates Tracking 160172 as yet unmatched pairs. 55110 records in RAM. INFO 2026-06-08 09:43:32 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,503 INFO 2026-06-08 09:43:32 MarkDuplicates Tracking 156051 as yet unmatched pairs. 50981 records in RAM. INFO 2026-06-08 09:43:34 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:18,009,943 INFO 2026-06-08 09:43:34 MarkDuplicates Tracking 154021 as yet unmatched pairs. 48939 records in RAM. INFO 2026-06-08 09:43:35 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:19,025,505 INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 151243 as yet unmatched pairs. 46155 records in RAM. INFO 2026-06-08 09:43:37 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:34,377,572 INFO 2026-06-08 09:43:37 MarkDuplicates Tracking 150019 as yet unmatched pairs. 44927 records in RAM. INFO 2026-06-08 09:43:39 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:35,488,666 INFO 2026-06-08 09:43:39 MarkDuplicates Tracking 159603 as yet unmatched pairs. 54506 records in RAM. INFO 2026-06-08 09:43:40 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,524,877 INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 172429 as yet unmatched pairs. 67331 records in RAM. INFO 2026-06-08 09:43:43 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr19:35,527,474 INFO 2026-06-08 09:43:43 MarkDuplicates Tracking 154669 as yet unmatched pairs. 49571 records in RAM. INFO 2026-06-08 09:43:44 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:35,528,139 INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 156779 as yet unmatched pairs. 51680 records in RAM. INFO 2026-06-08 09:43:46 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:38,283,640 INFO 2026-06-08 09:43:46 MarkDuplicates Tracking 141309 as yet unmatched pairs. 36210 records in RAM. INFO 2026-06-08 09:43:47 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:38,771,068 INFO 2026-06-08 09:43:47 MarkDuplicates Tracking 145907 as yet unmatched pairs. 40804 records in RAM. INFO 2026-06-08 09:43:49 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,388,792 INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 136538 as yet unmatched pairs. 31431 records in RAM. INFO 2026-06-08 09:43:51 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,443 INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 135071 as yet unmatched pairs. 29956 records in RAM. INFO 2026-06-08 09:43:52 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:41,279,130 INFO 2026-06-08 09:43:52 MarkDuplicates Tracking 132911 as yet unmatched pairs. 27792 records in RAM. INFO 2026-06-08 09:43:54 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,474 INFO 2026-06-08 09:43:54 MarkDuplicates Tracking 131332 as yet unmatched pairs. 26206 records in RAM. INFO 2026-06-08 09:43:55 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:42,402,888 INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 128343 as yet unmatched pairs. 23207 records in RAM. INFO 2026-06-08 09:43:57 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,878,228 INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 126375 as yet unmatched pairs. 21237 records in RAM. INFO 2026-06-08 09:43:58 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:45,616,835 INFO 2026-06-08 09:43:58 MarkDuplicates Tracking 124418 as yet unmatched pairs. 19273 records in RAM. INFO 2026-06-08 09:44:00 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:47,270,589 INFO 2026-06-08 09:44:00 MarkDuplicates Tracking 121785 as yet unmatched pairs. 16639 records in RAM. INFO 2026-06-08 09:44:02 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,795,358 INFO 2026-06-08 09:44:02 MarkDuplicates Tracking 119763 as yet unmatched pairs. 14611 records in RAM. INFO 2026-06-08 09:44:03 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,944 INFO 2026-06-08 09:44:03 MarkDuplicates Tracking 119310 as yet unmatched pairs. 14154 records in RAM. INFO 2026-06-08 09:44:05 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,951,916 INFO 2026-06-08 09:44:05 MarkDuplicates Tracking 115425 as yet unmatched pairs. 10266 records in RAM. INFO 2026-06-08 09:44:07 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr19:51,014,799 INFO 2026-06-08 09:44:07 MarkDuplicates Tracking 117947 as yet unmatched pairs. 12782 records in RAM. INFO 2026-06-08 09:44:09 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:51,896,540 INFO 2026-06-08 09:44:09 MarkDuplicates Tracking 111515 as yet unmatched pairs. 6343 records in RAM. INFO 2026-06-08 09:44:10 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,697 INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 111812 as yet unmatched pairs. 6635 records in RAM. INFO 2026-06-08 09:44:12 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,602,136 INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 107874 as yet unmatched pairs. 2697 records in RAM. INFO 2026-06-08 09:44:14 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:58,470,929 INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 105916 as yet unmatched pairs. 735 records in RAM. INFO 2026-06-08 09:44:15 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:2,309,724 INFO 2026-06-08 09:44:15 MarkDuplicates Tracking 107858 as yet unmatched pairs. 29870 records in RAM. INFO 2026-06-08 09:44:17 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr20:2,656,798 INFO 2026-06-08 09:44:17 MarkDuplicates Tracking 102329 as yet unmatched pairs. 24338 records in RAM. INFO 2026-06-08 09:44:18 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:5,100,784 INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 100223 as yet unmatched pairs. 22227 records in RAM. INFO 2026-06-08 09:44:20 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr20:17,620,721 INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 99405 as yet unmatched pairs. 21398 records in RAM. INFO 2026-06-08 09:44:22 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:25,048,084 INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 96714 as yet unmatched pairs. 18704 records in RAM. INFO 2026-06-08 09:44:23 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:34,479,671 INFO 2026-06-08 09:44:23 MarkDuplicates Tracking 95043 as yet unmatched pairs. 17026 records in RAM. INFO 2026-06-08 09:44:25 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr20:36,526,971 INFO 2026-06-08 09:44:25 MarkDuplicates Tracking 92993 as yet unmatched pairs. 14973 records in RAM. INFO 2026-06-08 09:44:27 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr20:41,202,074 INFO 2026-06-08 09:44:27 MarkDuplicates Tracking 90919 as yet unmatched pairs. 12899 records in RAM. INFO 2026-06-08 09:44:28 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:45,253,098 INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 95070 as yet unmatched pairs. 17050 records in RAM. INFO 2026-06-08 09:44:30 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:47,635,331 INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 87851 as yet unmatched pairs. 9828 records in RAM. INFO 2026-06-08 09:44:32 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,805 INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 86122 as yet unmatched pairs. 8098 records in RAM. INFO 2026-06-08 09:44:34 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:58,994,662 INFO 2026-06-08 09:44:34 MarkDuplicates Tracking 83965 as yet unmatched pairs. 5933 records in RAM. INFO 2026-06-08 09:44:35 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,195 INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 82534 as yet unmatched pairs. 4497 records in RAM. INFO 2026-06-08 09:44:37 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr20:63,661,784 INFO 2026-06-08 09:44:37 MarkDuplicates Tracking 79501 as yet unmatched pairs. 1450 records in RAM. INFO 2026-06-08 09:44:38 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,047 INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 77708 as yet unmatched pairs. 16321 records in RAM. INFO 2026-06-08 09:44:40 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,263 INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 76872 as yet unmatched pairs. 15479 records in RAM. INFO 2026-06-08 09:44:41 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,948 INFO 2026-06-08 09:44:41 MarkDuplicates Tracking 76020 as yet unmatched pairs. 14621 records in RAM. INFO 2026-06-08 09:44:42 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr21:17,598,740 INFO 2026-06-08 09:44:42 MarkDuplicates Tracking 74864 as yet unmatched pairs. 13461 records in RAM. INFO 2026-06-08 09:44:44 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr21:33,460,410 INFO 2026-06-08 09:44:44 MarkDuplicates Tracking 73464 as yet unmatched pairs. 12059 records in RAM. INFO 2026-06-08 09:44:45 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr21:38,296,976 INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 71262 as yet unmatched pairs. 9854 records in RAM. INFO 2026-06-08 09:44:47 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr21:42,862,315 INFO 2026-06-08 09:44:47 MarkDuplicates Tracking 69323 as yet unmatched pairs. 7915 records in RAM. INFO 2026-06-08 09:44:48 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr21:44,907,012 INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 69227 as yet unmatched pairs. 7814 records in RAM. INFO 2026-06-08 09:44:50 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr21:45,990,979 INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 69410 as yet unmatched pairs. 7996 records in RAM. INFO 2026-06-08 09:44:52 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr21:46,121,072 INFO 2026-06-08 09:44:52 MarkDuplicates Tracking 70339 as yet unmatched pairs. 8922 records in RAM. INFO 2026-06-08 09:44:54 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr22:17,864,938 INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 61333 as yet unmatched pairs. 30344 records in RAM. INFO 2026-06-08 09:44:56 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:20,918,062 INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 59565 as yet unmatched pairs. 28576 records in RAM. INFO 2026-06-08 09:44:57 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:23,772,921 INFO 2026-06-08 09:44:57 MarkDuplicates Tracking 58516 as yet unmatched pairs. 27525 records in RAM. INFO 2026-06-08 09:44:59 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,098 INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 55002 as yet unmatched pairs. 24011 records in RAM. INFO 2026-06-08 09:45:00 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:29,603,945 INFO 2026-06-08 09:45:00 MarkDuplicates Tracking 53051 as yet unmatched pairs. 22059 records in RAM. INFO 2026-06-08 09:45:02 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:31,714,645 INFO 2026-06-08 09:45:02 MarkDuplicates Tracking 50992 as yet unmatched pairs. 19998 records in RAM. INFO 2026-06-08 09:45:04 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,847 INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 50648 as yet unmatched pairs. 19646 records in RAM. INFO 2026-06-08 09:45:05 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr22:37,232,877 INFO 2026-06-08 09:45:05 MarkDuplicates Tracking 48055 as yet unmatched pairs. 17051 records in RAM. INFO 2026-06-08 09:45:07 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:38,481,331 INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 45130 as yet unmatched pairs. 14125 records in RAM. INFO 2026-06-08 09:45:09 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr22:40,360,475 INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 43576 as yet unmatched pairs. 12567 records in RAM. INFO 2026-06-08 09:45:10 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr22:41,893,077 INFO 2026-06-08 09:45:10 MarkDuplicates Tracking 42415 as yet unmatched pairs. 11404 records in RAM. INFO 2026-06-08 09:45:12 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:45,738,729 INFO 2026-06-08 09:45:12 MarkDuplicates Tracking 40040 as yet unmatched pairs. 9029 records in RAM. INFO 2026-06-08 09:45:14 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,275,910 INFO 2026-06-08 09:45:14 MarkDuplicates Tracking 37428 as yet unmatched pairs. 6414 records in RAM. INFO 2026-06-08 09:45:15 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,058 INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 44007 as yet unmatched pairs. 12992 records in RAM. INFO 2026-06-08 09:45:17 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:50,722,293 INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 31260 as yet unmatched pairs. 245 records in RAM. INFO 2026-06-08 09:45:19 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chrX:11,760,863 INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 29274 as yet unmatched pairs. 19459 records in RAM. INFO 2026-06-08 09:45:20 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:37,805,150 INFO 2026-06-08 09:45:20 MarkDuplicates Tracking 28337 as yet unmatched pairs. 18508 records in RAM. INFO 2026-06-08 09:45:22 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chrX:47,185,733 INFO 2026-06-08 09:45:22 MarkDuplicates Tracking 26410 as yet unmatched pairs. 16579 records in RAM. INFO 2026-06-08 09:45:24 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,562 INFO 2026-06-08 09:45:24 MarkDuplicates Tracking 25062 as yet unmatched pairs. 15229 records in RAM. INFO 2026-06-08 09:45:25 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,638 INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 23532 as yet unmatched pairs. 13699 records in RAM. INFO 2026-06-08 09:45:27 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:68,772,233 INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 20827 as yet unmatched pairs. 10994 records in RAM. INFO 2026-06-08 09:45:29 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:77,682,677 INFO 2026-06-08 09:45:29 MarkDuplicates Tracking 19726 as yet unmatched pairs. 9892 records in RAM. INFO 2026-06-08 09:45:30 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:108,692,797 INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 17777 as yet unmatched pairs. 7942 records in RAM. INFO 2026-06-08 09:45:32 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:129,792,983 INFO 2026-06-08 09:45:32 MarkDuplicates Tracking 16347 as yet unmatched pairs. 6512 records in RAM. INFO 2026-06-08 09:45:33 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:152,920,568 INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 15585 as yet unmatched pairs. 5747 records in RAM. INFO 2026-06-08 09:45:35 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,458 INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 13332 as yet unmatched pairs. 3494 records in RAM. INFO 2026-06-08 09:45:36 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,450,035 INFO 2026-06-08 09:45:36 MarkDuplicates Tracking 10782 as yet unmatched pairs. 943 records in RAM. INFO 2026-06-08 09:45:38 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,450 INFO 2026-06-08 09:45:38 MarkDuplicates Tracking 8973 as yet unmatched pairs. 2947 records in RAM. INFO 2026-06-08 09:45:39 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:152,904 INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 6191 as yet unmatched pairs. 164 records in RAM. INFO 2026-06-08 09:45:40 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,463 INFO 2026-06-08 09:45:40 MarkDuplicates Tracking 6010 as yet unmatched pairs. 6003 records in RAM. INFO 2026-06-08 09:45:42 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: KI270733.1:171,702 INFO 2026-06-08 09:45:42 MarkDuplicates Tracking 754 as yet unmatched pairs. 747 records in RAM. INFO 2026-06-08 09:45:43 MarkDuplicates Read 641949748 records. 0 pairs never matched. INFO 2026-06-08 09:46:30 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142432; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:46:30 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:46:33 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:46:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,756 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1124 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,915 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1584 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,472 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,285 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1298 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,501 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,276 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1242 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,352 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1151 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,636 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,122 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 2516 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,301 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,520 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1385 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,823 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,252 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,675 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,490 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1518 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,829 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,795 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1426 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,983 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 2528 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,899 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,579 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,701 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder Large duplicate set. size = 1125 INFO 2026-06-08 09:46:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,235 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,448 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,486 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1586 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,372 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,495 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,230 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1877 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,965 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1495 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,215 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1371 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,802 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,860 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,056 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1362 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,830 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 2569 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,321 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,311 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1969 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,788 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,312 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,456 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1588 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,450 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1100 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,202 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,765 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1350 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,376 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1674 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,219 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1663 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,185 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1629 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,575 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 09:46:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,008 INFO 2026-06-08 09:46:51 OpticalDuplicateFinder Large duplicate set. size = 1458 INFO 2026-06-08 09:46:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,869 INFO 2026-06-08 09:46:55 OpticalDuplicateFinder Large duplicate set. size = 1534 INFO 2026-06-08 09:46:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,617 INFO 2026-06-08 09:46:55 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:46:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,356 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,669 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,513 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,238 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1260 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,250 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,176 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 09:47:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,837 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,134 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,564 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1491 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,519 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,481 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,096 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1331 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,552 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,657 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,149 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,208 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,190 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1594 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,211 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1263 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,697 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:47:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,423 INFO 2026-06-08 09:47:26 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 09:47:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,453 INFO 2026-06-08 09:47:26 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:47:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,228 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,945 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,488 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1961 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,179 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1348 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,903 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,467 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1118 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1913 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,483 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1415 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,689 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,162 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,998 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 2120 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,435 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,476 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 3708 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,262 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,380 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,358 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 2674 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,531 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,164 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,293 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 2008 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,342 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,175 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,105 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1524 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,730 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,072 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1410 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,421 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 2551 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,559 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,968 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1764 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,988 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1347 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,921 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,673 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,796 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1393 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,785 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,704 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,765 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1840 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,726 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1407 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,833 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,079 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,905 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1563 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,368 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1300 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,281 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1855 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,629 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder Large duplicate set. size = 1825 INFO 2026-06-08 09:47:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,794 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,547 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,884 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,763 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1841 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,680 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,428 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1459 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,120 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 2287 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,624 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,319 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,135 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,784 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,532 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1710 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,422 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1238 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,043 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1909 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,238 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1518 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,430 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,161 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1332 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,682 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,305 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 2980 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,734 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,261 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1600 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,924 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder Large duplicate set. size = 1844 INFO 2026-06-08 09:47:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,315 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1264 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,277 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1355 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,976 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,891 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,451 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1305 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,200 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,033 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,618 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,036 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,269 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1981 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,421 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1365 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,030 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,568 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:47:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,283 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1553 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,542 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 2222 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,761 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,692 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1162 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,395 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,034 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1280 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,851 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 3726 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,378 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,921 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,461 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 2082 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,998 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,044 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1408 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,367 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1378 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,757 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1831 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,326 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1064 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,453 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,639 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 3916 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,734 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,521 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,070 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 2276 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,801 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,985 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1388 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,605 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,579 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 09:47:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,116 INFO 2026-06-08 09:47:32 OpticalDuplicateFinder Large duplicate set. size = 1194 INFO 2026-06-08 09:47:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,828 INFO 2026-06-08 09:47:37 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:47:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,086 INFO 2026-06-08 09:48:00 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-08 09:48:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,980 INFO 2026-06-08 09:48:00 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:48:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,214 INFO 2026-06-08 09:48:00 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:48:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:49:01 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:49:02 MarkDuplicates After generateDuplicateIndexes freeMemory: 203876704; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:49:02 MarkDuplicates Marking 276118727 records as duplicates. INFO 2026-06-08 09:49:02 MarkDuplicates Found 24389235 optical duplicate clusters. INFO 2026-06-08 09:49:02 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:49:17 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:23,794,530 INFO 2026-06-08 09:49:32 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 14s. Last read position: chr1:46,635,961 INFO 2026-06-08 09:49:47 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 15s. Last read position: chr1:146,128,252 INFO 2026-06-08 09:50:02 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:00:59s. Time for last 10,000,000: 14s. Last read position: chr1:152,911,089 INFO 2026-06-08 09:50:16 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 13s. Last read position: chr1:153,457,880 INFO 2026-06-08 09:50:30 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 14s. Last read position: chr1:171,587,689 INFO 2026-06-08 09:50:45 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 14s. Last read position: chr1:228,166,116 INFO 2026-06-08 09:51:00 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:01:58s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:51:15 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 15s. Last read position: chr2:102,176,446 INFO 2026-06-08 09:51:30 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 14s. Last read position: chr2:178,552,040 INFO 2026-06-08 09:51:45 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 14s. Last read position: chr2:197,393,001 INFO 2026-06-08 09:52:00 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 14s. Last read position: chr2:237,377,207 INFO 2026-06-08 09:52:15 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 15s. Last read position: chr3:49,426,288 INFO 2026-06-08 09:52:31 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 15s. Last read position: chr3:139,358,217 INFO 2026-06-08 09:52:46 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 15s. Last read position: chr4:15,003,006 INFO 2026-06-08 09:53:01 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:59s. Time for last 10,000,000: 15s. Last read position: chr4:159,353,805 INFO 2026-06-08 09:53:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 15s. Last read position: chr5:119,477,416 INFO 2026-06-08 09:53:31 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 14s. Last read position: chr5:150,698,498 INFO 2026-06-08 09:53:46 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 14s. Last read position: chr6:7,580,786 INFO 2026-06-08 09:54:01 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 14s. Last read position: chr6:32,027,701 INFO 2026-06-08 09:54:16 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:13s. Time for last 10,000,000: 14s. Last read position: chr6:89,080,784 INFO 2026-06-08 09:54:31 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:28s. Time for last 10,000,000: 14s. Last read position: chr7:1,158,241 INFO 2026-06-08 09:54:46 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:43s. Time for last 10,000,000: 15s. Last read position: chr7:76,302,873 INFO 2026-06-08 09:55:01 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 15s. Last read position: chr7:135,604,422 INFO 2026-06-08 09:55:16 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 15s. Last read position: chr8:51,861,075 INFO 2026-06-08 09:55:31 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 15s. Last read position: chr8:143,580,682 INFO 2026-06-08 09:55:45 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 14s. Last read position: chr8:143,865,780 INFO 2026-06-08 09:56:00 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 14s. Last read position: chr9:33,462,692 INFO 2026-06-08 09:56:15 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 15s. Last read position: chr9:120,778,427 INFO 2026-06-08 09:56:30 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 15s. Last read position: chr10:5,746,710 INFO 2026-06-08 09:56:46 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 15s. Last read position: chr10:89,338,835 INFO 2026-06-08 09:57:01 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 15s. Last read position: chr11:1,926,696 INFO 2026-06-08 09:57:16 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 15s. Last read position: chr11:62,527,210 INFO 2026-06-08 09:57:31 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 15s. Last read position: chr11:73,309,887 INFO 2026-06-08 09:57:46 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 14s. Last read position: chr12:355,206 INFO 2026-06-08 09:58:01 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 15s. Last read position: chr12:49,128,538 INFO 2026-06-08 09:58:16 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 14s. Last read position: chr12:52,473,418 INFO 2026-06-08 09:58:30 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:27s. Time for last 10,000,000: 14s. Last read position: chr12:52,519,869 INFO 2026-06-08 09:58:45 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 14s. Last read position: chr12:69,239,690 INFO 2026-06-08 09:59:00 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 15s. Last read position: chr12:127,568,886 INFO 2026-06-08 09:59:15 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 14s. Last read position: chr14:21,363,239 INFO 2026-06-08 09:59:30 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:27s. Time for last 10,000,000: 15s. Last read position: chr14:74,552,231 INFO 2026-06-08 09:59:44 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 14s. Last read position: chr15:28,115,519 INFO 2026-06-08 10:00:00 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 15s. Last read position: chr15:74,023,022 INFO 2026-06-08 10:00:14 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:12s. Time for last 10,000,000: 14s. Last read position: chr16:3,413,053 INFO 2026-06-08 10:00:29 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 14s. Last read position: chr16:29,551,285 INFO 2026-06-08 10:00:44 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 14s. Last read position: chr16:74,893,731 INFO 2026-06-08 10:00:59 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 14s. Last read position: chr17:7,579,713 INFO 2026-06-08 10:01:14 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 14s. Last read position: chr17:38,724,835 INFO 2026-06-08 10:01:28 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:26s. Time for last 10,000,000: 14s. Last read position: chr17:41,609,877 INFO 2026-06-08 10:01:44 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 15s. Last read position: chr17:41,624,351 INFO 2026-06-08 10:02:02 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 18s. Last read position: chr17:50,190,888 INFO 2026-06-08 10:02:17 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 15s. Last read position: chr17:73,205,551 INFO 2026-06-08 10:02:32 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 15s. Last read position: chr18:23,467,501 INFO 2026-06-08 10:02:47 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:45s. Time for last 10,000,000: 14s. Last read position: chr19:2,073,401 INFO 2026-06-08 10:03:02 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 14s. Last read position: chr19:15,256,964 INFO 2026-06-08 10:03:17 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 14s. Last read position: chr19:38,771,068 INFO 2026-06-08 10:03:32 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 14s. Last read position: chr19:49,497,944 INFO 2026-06-08 10:03:47 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 14s. Last read position: chr20:17,620,721 INFO 2026-06-08 10:04:02 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 15s. Last read position: chr20:63,661,784 INFO 2026-06-08 10:04:16 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 14s. Last read position: chr21:46,121,072 INFO 2026-06-08 10:04:31 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 14s. Last read position: chr22:40,360,475 INFO 2026-06-08 10:04:46 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 14s. Last read position: chrX:53,552,638 INFO 2026-06-08 10:05:01 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 15s. Last read position: KI270733.1:128,463 INFO 2026-06-08 10:05:14 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 10:05:14 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 10:05:14 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 10:05:14 MarkDuplicates Before output close freeMemory: 203843224; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 10:05:14 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 10:05:14 MarkDuplicates After output close freeMemory: 104084152; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 10:05:14 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.77 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory