Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-184b05-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:42:29.434 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:42:29 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-184b05-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:42:29 GMT 2026] Executing as ?@nf-00873f9d2510e32010bf8fbdf59f45d0-e21e7-ssrfq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:42:29 MarkDuplicates Start of doWork freeMemory: 105828360; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:42:29 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:42:29 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,054,486
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 4778 as yet unmatched pairs. 3077 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,437,270
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 4740 as yet unmatched pairs. 1064 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:2,050,643
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 5543 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:3,835,005
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 7508 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,453
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 9094 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:10,629,796
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 10485 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:11,926,050
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 13850 as yet unmatched pairs. 1531 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:15,807,561
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 13822 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:16,986,224
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 16602 as yet unmatched pairs. 1297 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:19,210,075
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 18474 as yet unmatched pairs. 1545 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:20,652,935
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 19803 as yet unmatched pairs. 1159 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:21,864,199
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 21031 as yet unmatched pairs. 801 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:23,193,506
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 22172 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:25,617,778
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 24012 as yet unmatched pairs. 719 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:26,774,384
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 25218 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:28,236,133
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 26535 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:31,665,120
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 28549 as yet unmatched pairs. 581 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:32,771,757
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 31311 as yet unmatched pairs. 1662 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:35,557,787
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 31317 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:39,231,187
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 33328 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:41,046,449
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 34387 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:43,553,561
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 36981 as yet unmatched pairs. 1062 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,043
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 38754 as yet unmatched pairs. 1292 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:46,198,521
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 39005 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:52,397,789
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 40585 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:55,052,298
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 42206 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:67,425,148
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 43918 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:86,499,923
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 45051 as yet unmatched pairs. 358 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:100,027,229
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 46043 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:109,668,458
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 48186 as yet unmatched pairs. 859 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:111,459,488
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 48938 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:114,510,710
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 52253 as yet unmatched pairs. 1865 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:116,544,519
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 52046 as yet unmatched pairs. 305 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:120,808,675
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 52945 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:146,972,779
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 53697 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,545
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 54452 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:149,934,986
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 56678 as yet unmatched pairs. 1509 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:151,024,720
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 56777 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:151,639,012
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 58279 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,585
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 59874 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:154,586,241
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 61667 as yet unmatched pairs. 767 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:155,169,845
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 65121 as yet unmatched pairs. 2571 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:155,752,515
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 64272 as yet unmatched pairs. 384 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,390
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 70821 as yet unmatched pairs. 5131 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,743,411
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 68722 as yet unmatched pairs. 1354 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:160,323,518
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 69871 as yet unmatched pairs. 965 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:165,649,842
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 70890 as yet unmatched pairs. 702 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,300
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 77001 as yet unmatched pairs. 5325 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:177,958,887
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 73193 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:184,477,512
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 74786 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:200,899,534
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 77229 as yet unmatched pairs. 1350 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:202,540,067
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 77610 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:204,469,685
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 79380 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:206,931,504
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 83521 as yet unmatched pairs. 3230 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:206,935,556
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 94222 as yet unmatched pairs. 12399 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,435
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 89420 as yet unmatched pairs. 6177 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:211,313,686
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 84733 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:223,550,961
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 87504 as yet unmatched pairs. 1212 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:226,407,810
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 87788 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:229,518,323
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 89591 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:235,252,748
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 91868 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:246,861,961
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 93081 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:10,122,996
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 95064 as yet unmatched pairs. 94275 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,206
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 98381 as yet unmatched pairs. 97580 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:21,011,026
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 99228 as yet unmatched pairs. 98416 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:24,275,836
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 98757 as yet unmatched pairs. 97938 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:27,083,314
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 101162 as yet unmatched pairs. 100323 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:28,412,022
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 103137 as yet unmatched pairs. 102293 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 131444 as yet unmatched pairs. 99891 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 443923 as yet unmatched pairs. 77012 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 800786 as yet unmatched pairs. 50672 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:34,199,210
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 858604 as yet unmatched pairs. 46328 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:42,329,831
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 857895 as yet unmatched pairs. 45619 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:46,543,023
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 855629 as yet unmatched pairs. 43342 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,540
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 855638 as yet unmatched pairs. 43340 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:60,901,004
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 852621 as yet unmatched pairs. 40314 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:69,642,901
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 851538 as yet unmatched pairs. 39216 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:73,847,677
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 850262 as yet unmatched pairs. 37930 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:74,493,013
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 848515 as yet unmatched pairs. 36175 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:79,157,288
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 849584 as yet unmatched pairs. 37226 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:86,144,317
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 845752 as yet unmatched pairs. 33383 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:96,186,793
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 844665 as yet unmatched pairs. 32275 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:98,520,137
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 842856 as yet unmatched pairs. 30461 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:108,489,936
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 841447 as yet unmatched pairs. 29037 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,866
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 840317 as yet unmatched pairs. 27896 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:113,955,623
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 839399 as yet unmatched pairs. 26965 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:127,612,297
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 839580 as yet unmatched pairs. 27137 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:131,120,947
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 836377 as yet unmatched pairs. 23925 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:144,400,014
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 834725 as yet unmatched pairs. 22242 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:162,011,800
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 833897 as yet unmatched pairs. 21386 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:173,956,187
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 833025 as yet unmatched pairs. 20503 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:182,775,323
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 830947 as yet unmatched pairs. 18420 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:190,656,121
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 829442 as yet unmatched pairs. 16905 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:200,931,378
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 827708 as yet unmatched pairs. 15156 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:207,711,959
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 826578 as yet unmatched pairs. 14013 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 3s. Last read position: chr2:215,406,261
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 826007 as yet unmatched pairs. 13434 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:218,402,143
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 824387 as yet unmatched pairs. 11807 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:219,220,839
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 822584 as yet unmatched pairs. 9995 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:226,795,519
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 820878 as yet unmatched pairs. 8268 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:231,461,561
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 819305 as yet unmatched pairs. 6686 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:233,523,229
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 817722 as yet unmatched pairs. 5088 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:238,096,788
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 816291 as yet unmatched pairs. 3635 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:241,203,357
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 814228 as yet unmatched pairs. 1555 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:4,983,100
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 812952 as yet unmatched pairs. 41012 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:10,286,728
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 810786 as yet unmatched pairs. 38842 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:15,096,007
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 809260 as yet unmatched pairs. 37310 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr3:31,619,675
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 808085 as yet unmatched pairs. 36119 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:38,126,171
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 807070 as yet unmatched pairs. 35089 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr3:42,125,526
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 804955 as yet unmatched pairs. 32969 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:46,579,959
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 803854 as yet unmatched pairs. 31858 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:47,638,724
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 802045 as yet unmatched pairs. 30042 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:48,590,505
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 800319 as yet unmatched pairs. 28297 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:49,057,842
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 798598 as yet unmatched pairs. 26569 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:49,685,261
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 797305 as yet unmatched pairs. 25271 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:50,269,326
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 797665 as yet unmatched pairs. 25613 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:52,054,249
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 793619 as yet unmatched pairs. 21552 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,522,915
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 792459 as yet unmatched pairs. 20391 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:58,123,132
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 792064 as yet unmatched pairs. 19981 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:69,101,848
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 789554 as yet unmatched pairs. 17459 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:101,849,761
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 788833 as yet unmatched pairs. 16724 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:121,635,770
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 786470 as yet unmatched pairs. 14357 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:125,013,588
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 785145 as yet unmatched pairs. 13020 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:129,250,685
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 783858 as yet unmatched pairs. 11728 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:138,162,363
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 781955 as yet unmatched pairs. 9820 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:139,561,230
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 780873 as yet unmatched pairs. 8713 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:154,276,220
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 779113 as yet unmatched pairs. 6937 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:168,032,542
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 778317 as yet unmatched pairs. 6139 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:183,984,700
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 776647 as yet unmatched pairs. 4442 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:185,534,928
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 775109 as yet unmatched pairs. 2893 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,336,932
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 773877 as yet unmatched pairs. 1637 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:197,017,202
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 772729 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr4:990,212
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 771381 as yet unmatched pairs. 21940 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr4:1,739,739
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 770092 as yet unmatched pairs. 20645 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:2,832,356
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 767447 as yet unmatched pairs. 17992 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:6,861,586
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 765521 as yet unmatched pairs. 16044 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:16,210,113
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 763966 as yet unmatched pairs. 14473 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr4:37,631,405
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 762544 as yet unmatched pairs. 13032 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:48,897,808
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 761674 as yet unmatched pairs. 12145 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:67,495,160
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 759633 as yet unmatched pairs. 10073 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:76,309,759
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 758266 as yet unmatched pairs. 8697 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:86,159,434
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 756846 as yet unmatched pairs. 7276 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:99,621,121
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 756115 as yet unmatched pairs. 6529 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,770
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 754709 as yet unmatched pairs. 5097 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:142,305,458
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 753033 as yet unmatched pairs. 3414 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:155,953,750
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 751632 as yet unmatched pairs. 2006 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:186,596,976
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 752116 as yet unmatched pairs. 2476 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr5:524,179
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 749838 as yet unmatched pairs. 34367 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:10,261,608
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 746982 as yet unmatched pairs. 31501 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:14,581,921
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 745523 as yet unmatched pairs. 30036 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:40,681,698
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 744408 as yet unmatched pairs. 28910 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:65,664,248
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 742951 as yet unmatched pairs. 27439 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:75,029,119
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 741999 as yet unmatched pairs. 26465 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:95,464,584
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 740545 as yet unmatched pairs. 24982 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:119,071,605
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 739348 as yet unmatched pairs. 23753 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:132,608,493
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 737368 as yet unmatched pairs. 21762 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:136,029,002
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 735816 as yet unmatched pairs. 20177 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:139,387,706
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 734438 as yet unmatched pairs. 18797 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:141,375,094
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 732752 as yet unmatched pairs. 17080 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:143,300,487
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 731306 as yet unmatched pairs. 15630 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:150,132,816
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 730357 as yet unmatched pairs. 14671 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,106
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 741009 as yet unmatched pairs. 25320 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:150,649,505
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 728478 as yet unmatched pairs. 12781 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:157,049,273
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 725304 as yet unmatched pairs. 9590 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,744
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 730202 as yet unmatched pairs. 14475 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:176,575,164
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 724192 as yet unmatched pairs. 8452 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,304,831
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 721909 as yet unmatched pairs. 6155 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,140
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 720847 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:179,822,967
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 722403 as yet unmatched pairs. 6634 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:180,992,762
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 717559 as yet unmatched pairs. 1773 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:2,959,220
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 715730 as yet unmatched pairs. 46773 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:7,248,740
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 714526 as yet unmatched pairs. 45565 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr6:16,306,583
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 711605 as yet unmatched pairs. 42639 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:26,056,304
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 710474 as yet unmatched pairs. 41502 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:27,147,151
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 709541 as yet unmatched pairs. 40548 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,433
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 708259 as yet unmatched pairs. 39246 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr6:30,492,564
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 706861 as yet unmatched pairs. 37837 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:30,916,923
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 704744 as yet unmatched pairs. 35705 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,530,800
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 704914 as yet unmatched pairs. 35869 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,687,856
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 702017 as yet unmatched pairs. 32969 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,883,866
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 700652 as yet unmatched pairs. 31595 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,419
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 699915 as yet unmatched pairs. 30858 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,580,755
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 698334 as yet unmatched pairs. 29274 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:33,263,488
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 696388 as yet unmatched pairs. 27323 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,640,498
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 694864 as yet unmatched pairs. 25787 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:35,452,636
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 692925 as yet unmatched pairs. 23840 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:39,907,003
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 691468 as yet unmatched pairs. 22372 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:41,930,164
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 689957 as yet unmatched pairs. 20855 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:43,159,881
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 688357 as yet unmatched pairs. 19241 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,019
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 686666 as yet unmatched pairs. 17539 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:53,065,692
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 685685 as yet unmatched pairs. 16523 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:75,102,009
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 684351 as yet unmatched pairs. 15179 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,025
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 683361 as yet unmatched pairs. 14177 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:107,458,979
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 681276 as yet unmatched pairs. 12088 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:112,191,828
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 679657 as yet unmatched pairs. 10458 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:128,082,451
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 678076 as yet unmatched pairs. 8858 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr6:138,092,054
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 677522 as yet unmatched pairs. 8292 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:145,919,376
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 675180 as yet unmatched pairs. 5935 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:157,110,487
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 673913 as yet unmatched pairs. 4652 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,606
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 675608 as yet unmatched pairs. 6337 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:167,827,157
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 671712 as yet unmatched pairs. 2419 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:899,296
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 669092 as yet unmatched pairs. 50982 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:2,432,698
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 666861 as yet unmatched pairs. 48740 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:5,362,701
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 665365 as yet unmatched pairs. 47244 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,401
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 667758 as yet unmatched pairs. 49631 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:6,653,214
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 661948 as yet unmatched pairs. 43813 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,633
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 662960 as yet unmatched pairs. 44812 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:39,997,635
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 658313 as yet unmatched pairs. 40145 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:44,539,780
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 657537 as yet unmatched pairs. 39361 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:47,439,504
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 655611 as yet unmatched pairs. 37421 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:65,979,874
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 654244 as yet unmatched pairs. 36040 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:73,259,324
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 652973 as yet unmatched pairs. 34758 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:74,338,544
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 651757 as yet unmatched pairs. 33534 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,559
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 650987 as yet unmatched pairs. 32756 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr7:76,511,772
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 648803 as yet unmatched pairs. 30568 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:91,941,084
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 651000 as yet unmatched pairs. 32762 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:92,095,024
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 647502 as yet unmatched pairs. 29260 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:92,579,317
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 646521 as yet unmatched pairs. 28271 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:98,293,500
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 644364 as yet unmatched pairs. 26100 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:99,668,347
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 644257 as yet unmatched pairs. 25991 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,008
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 642615 as yet unmatched pairs. 24335 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,861,498
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 639487 as yet unmatched pairs. 21192 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,956,605
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 639738 as yet unmatched pairs. 21438 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,648
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 636935 as yet unmatched pairs. 18629 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:101,038,386
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 636893 as yet unmatched pairs. 18584 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:101,240,157
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 635296 as yet unmatched pairs. 16985 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:102,555,907
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 635094 as yet unmatched pairs. 16773 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:102,688,204
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 633495 as yet unmatched pairs. 15171 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:112,450,590
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 632381 as yet unmatched pairs. 14053 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr7:127,704,907
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 634031 as yet unmatched pairs. 15699 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:129,711,534
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 629225 as yet unmatched pairs. 10877 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,367
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 628016 as yet unmatched pairs. 9658 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:142,050,242
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 626487 as yet unmatched pairs. 8121 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:143,383,052
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 626081 as yet unmatched pairs. 7713 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:149,147,615
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 624000 as yet unmatched pairs. 5630 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:150,857,059
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 624123 as yet unmatched pairs. 5741 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:151,237,923
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 620265 as yet unmatched pairs. 1877 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:158,760,113
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 618991 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,660
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 619131 as yet unmatched pairs. 46941 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr8:22,417,723
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 617107 as yet unmatched pairs. 44907 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:25,392,844
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 614392 as yet unmatched pairs. 42188 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:32,548,737
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 612883 as yet unmatched pairs. 40655 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:38,429,707
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 611462 as yet unmatched pairs. 39229 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:47,840,061
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 609400 as yet unmatched pairs. 37154 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:67,301,345
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 608415 as yet unmatched pairs. 36157 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:90,645,777
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 606929 as yet unmatched pairs. 34664 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,334
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 607497 as yet unmatched pairs. 35208 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 62s. Last read position: chr8:119,070,550
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 604019 as yet unmatched pairs. 31714 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:133,032,121
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 602439 as yet unmatched pairs. 30115 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,538,282
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 601055 as yet unmatched pairs. 28726 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr8:143,728,351
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 599434 as yet unmatched pairs. 27100 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,300
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 597869 as yet unmatched pairs. 25535 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,605
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 599740 as yet unmatched pairs. 27406 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,031
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 624918 as yet unmatched pairs. 52579 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,590
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 605832 as yet unmatched pairs. 33492 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,019
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 609490 as yet unmatched pairs. 37150 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,585
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 607516 as yet unmatched pairs. 35176 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,884
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 609096 as yet unmatched pairs. 36751 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,317
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 601490 as yet unmatched pairs. 29143 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,620
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 594446 as yet unmatched pairs. 22099 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,010
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 595515 as yet unmatched pairs. 23168 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,378
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 611386 as yet unmatched pairs. 39037 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,824
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 596777 as yet unmatched pairs. 24419 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,161
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 605754 as yet unmatched pairs. 33396 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,586
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 608806 as yet unmatched pairs. 36445 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,877
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 586975 as yet unmatched pairs. 14614 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,484
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 586871 as yet unmatched pairs. 14508 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,843
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 596579 as yet unmatched pairs. 24215 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,389
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 584977 as yet unmatched pairs. 12613 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,702
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 584635 as yet unmatched pairs. 12271 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,140
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 584619 as yet unmatched pairs. 12255 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,434
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 586107 as yet unmatched pairs. 13743 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,508
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 585037 as yet unmatched pairs. 12666 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,992
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 581220 as yet unmatched pairs. 8843 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,985,930
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 579414 as yet unmatched pairs. 7032 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,360
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 578077 as yet unmatched pairs. 5674 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:144,416,634
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 575455 as yet unmatched pairs. 3041 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:145,052,849
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 572526 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:14,306,989
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 572099 as yet unmatched pairs. 31042 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:33,318,912
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 569745 as yet unmatched pairs. 28672 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,073
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 568277 as yet unmatched pairs. 27179 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:40,099,290
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 566416 as yet unmatched pairs. 25296 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:75,891,235
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 566140 as yet unmatched pairs. 25013 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:86,077,522
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 565316 as yet unmatched pairs. 24180 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:93,515,741
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 562394 as yet unmatched pairs. 21250 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:99,003,520
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 560608 as yet unmatched pairs. 19451 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:101,430,828
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 559455 as yet unmatched pairs. 18292 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:113,183,822
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 558065 as yet unmatched pairs. 16898 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr9:121,138,614
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 556595 as yet unmatched pairs. 15419 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:125,915,684
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 554794 as yet unmatched pairs. 13605 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,224,256
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 553308 as yet unmatched pairs. 12101 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,762
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 551772 as yet unmatched pairs. 10559 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:130,883,987
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 550740 as yet unmatched pairs. 9520 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:133,109,643
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 549138 as yet unmatched pairs. 7907 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:135,486,228
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 547157 as yet unmatched pairs. 5919 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,668,166
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 545624 as yet unmatched pairs. 4383 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:137,175,300
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 543621 as yet unmatched pairs. 2370 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:137,754,243
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 541493 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:7,779,003
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 539976 as yet unmatched pairs. 32231 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:20,787,209
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 538611 as yet unmatched pairs. 30859 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:32,033,919
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 537433 as yet unmatched pairs. 29674 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:45,826,592
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 536223 as yet unmatched pairs. 28449 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,732
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 535503 as yet unmatched pairs. 27718 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,148
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 536165 as yet unmatched pairs. 28367 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr10:70,404,161
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 532663 as yet unmatched pairs. 24864 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:73,800,009
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 531487 as yet unmatched pairs. 23682 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:79,850,503
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 529752 as yet unmatched pairs. 21936 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:89,306,537
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 528551 as yet unmatched pairs. 20730 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:95,606,854
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 527367 as yet unmatched pairs. 19542 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:99,611,044
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 525587 as yet unmatched pairs. 17754 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:102,133,076
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 524175 as yet unmatched pairs. 16341 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:104,064,587
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 522955 as yet unmatched pairs. 15112 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:114,465,751
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 521313 as yet unmatched pairs. 13469 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:122,087,504
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 519740 as yet unmatched pairs. 11890 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr10:122,579,616
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 529315 as yet unmatched pairs. 21459 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,823
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 523693 as yet unmatched pairs. 15837 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:122,593,566
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 522517 as yet unmatched pairs. 14660 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:122,598,969
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 528547 as yet unmatched pairs. 20690 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,011
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 527074 as yet unmatched pairs. 19217 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:122,605,854
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 524115 as yet unmatched pairs. 16258 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:122,606,106
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 517058 as yet unmatched pairs. 9200 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 0s. Last read position: chr10:122,610,037
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 518579 as yet unmatched pairs. 10721 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:122,613,988
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 516411 as yet unmatched pairs. 8553 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:122,618,080
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 526484 as yet unmatched pairs. 18620 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:122,631,074
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 522549 as yet unmatched pairs. 14673 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:122,643,399
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 512554 as yet unmatched pairs. 4673 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:133,273,951
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 509158 as yet unmatched pairs. 1270 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr11:289,834
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 508538 as yet unmatched pairs. 72745 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:421,141
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 506276 as yet unmatched pairs. 70482 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:617,529
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 515142 as yet unmatched pairs. 79339 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:620,352
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 510327 as yet unmatched pairs. 74523 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:812,593
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 500308 as yet unmatched pairs. 64496 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,016,025
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 501990 as yet unmatched pairs. 66176 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr11:1,016,764
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 502795 as yet unmatched pairs. 66980 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,403
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 500105 as yet unmatched pairs. 64287 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,407
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 498326 as yet unmatched pairs. 62506 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,025,330
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 498343 as yet unmatched pairs. 62522 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,031,669
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 495290 as yet unmatched pairs. 59458 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,238,920
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 492264 as yet unmatched pairs. 56423 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,323
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 492005 as yet unmatched pairs. 56163 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:2,302,875
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 489516 as yet unmatched pairs. 53673 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:5,665,061
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 487671 as yet unmatched pairs. 51818 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:7,642,409
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 486210 as yet unmatched pairs. 50357 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:12,764,286
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 484681 as yet unmatched pairs. 48822 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:18,403,756
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 485184 as yet unmatched pairs. 49313 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:35,663,739
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 481917 as yet unmatched pairs. 46045 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:46,379,840
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 480857 as yet unmatched pairs. 44962 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:47,579,133
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 479794 as yet unmatched pairs. 43888 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:57,699,973
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 477272 as yet unmatched pairs. 41365 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:60,900,894
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 476719 as yet unmatched pairs. 40806 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,128,179
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 474497 as yet unmatched pairs. 38570 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:62,533,655
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 473830 as yet unmatched pairs. 37894 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,782,183
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 471628 as yet unmatched pairs. 35687 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:64,234,839
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 470145 as yet unmatched pairs. 34203 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:64,318,351
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 468595 as yet unmatched pairs. 32648 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:64,910,926
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 466180 as yet unmatched pairs. 30232 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,532,728
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 464549 as yet unmatched pairs. 28583 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,626
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 464515 as yet unmatched pairs. 28542 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:66,068,270
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 461074 as yet unmatched pairs. 25097 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:66,871,709
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 459170 as yet unmatched pairs. 23190 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:67,499,796
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 457455 as yet unmatched pairs. 21463 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:68,363,883
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 457354 as yet unmatched pairs. 21360 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:70,409,847
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 453957 as yet unmatched pairs. 17962 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:72,023,065
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 452747 as yet unmatched pairs. 16748 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:74,848,178
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 450503 as yet unmatched pairs. 14497 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:77,691,142
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 449085 as yet unmatched pairs. 13073 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:94,545,437
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 447853 as yet unmatched pairs. 11833 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:111,602,490
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 446314 as yet unmatched pairs. 10290 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:116,821,562
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 455859 as yet unmatched pairs. 19830 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:117,224,090
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 443222 as yet unmatched pairs. 7190 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:118,663,384
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 441541 as yet unmatched pairs. 5488 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:119,727,787
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 440479 as yet unmatched pairs. 4413 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:124,881,266
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 438241 as yet unmatched pairs. 2171 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:130,190,546
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 438202 as yet unmatched pairs. 2129 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:2,795,076
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 435717 as yet unmatched pairs. 39218 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:6,457,695
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 434209 as yet unmatched pairs. 37694 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:6,937,359
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 433445 as yet unmatched pairs. 36929 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:9,312,894
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 431400 as yet unmatched pairs. 34871 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:16,357,633
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 430163 as yet unmatched pairs. 33630 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:31,479,648
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 428661 as yet unmatched pairs. 32125 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:47,865,147
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 428000 as yet unmatched pairs. 31447 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,351
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 426741 as yet unmatched pairs. 30181 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:50,085,414
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 425047 as yet unmatched pairs. 28483 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,714
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 426592 as yet unmatched pairs. 30023 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:53,295,585
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 422215 as yet unmatched pairs. 25646 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,948
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 421101 as yet unmatched pairs. 24522 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:56,133,433
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 419303 as yet unmatched pairs. 22708 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,660
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 417827 as yet unmatched pairs. 21230 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,673
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 419606 as yet unmatched pairs. 23007 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,584
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 416048 as yet unmatched pairs. 19447 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,283,891
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 413793 as yet unmatched pairs. 17183 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:64,759,280
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 411995 as yet unmatched pairs. 15375 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:71,157,674
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 410815 as yet unmatched pairs. 14193 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr12:98,593,978
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 410657 as yet unmatched pairs. 14024 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:108,788,123
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 408185 as yet unmatched pairs. 11544 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,244
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 407364 as yet unmatched pairs. 10717 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:114,676,367
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 404956 as yet unmatched pairs. 8301 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:120,215,298
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 403950 as yet unmatched pairs. 7286 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,963
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 402430 as yet unmatched pairs. 5766 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:124,311,849
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 400515 as yet unmatched pairs. 3833 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:131,986,520
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 399014 as yet unmatched pairs. 2323 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:133,203,581
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 396705 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr13:24,223,750
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 396009 as yet unmatched pairs. 16686 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,810
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 394979 as yet unmatched pairs. 15649 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr13:39,038,675
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 393274 as yet unmatched pairs. 13929 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,101
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 394523 as yet unmatched pairs. 15175 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:51,934,997
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 390165 as yet unmatched pairs. 10813 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr13:73,062,539
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 389102 as yet unmatched pairs. 9749 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:80,337,561
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 387894 as yet unmatched pairs. 8528 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:99,517,631
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 387317 as yet unmatched pairs. 7946 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr13:109,785,704
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 383811 as yet unmatched pairs. 4435 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:112,690,357
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 382815 as yet unmatched pairs. 3432 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:113,795,187
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 380857 as yet unmatched pairs. 1455 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,698
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 378807 as yet unmatched pairs. 32778 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:22,845,877
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 377639 as yet unmatched pairs. 31610 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:23,323,036
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 376517 as yet unmatched pairs. 30480 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,432
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 376999 as yet unmatched pairs. 30954 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:24,415,153
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 372781 as yet unmatched pairs. 26735 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:38,209,889
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 370965 as yet unmatched pairs. 24913 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,670
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 371450 as yet unmatched pairs. 25360 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:57,208,649
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 368473 as yet unmatched pairs. 22376 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:64,741,203
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 367459 as yet unmatched pairs. 21355 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:68,921,060
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 366639 as yet unmatched pairs. 20535 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:73,569,405
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 365485 as yet unmatched pairs. 19375 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr14:75,437,897
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 362916 as yet unmatched pairs. 16805 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr14:91,170,023
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 361992 as yet unmatched pairs. 15879 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:94,116,456
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 361883 as yet unmatched pairs. 15763 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:101,836,247
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 358305 as yet unmatched pairs. 12180 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:102,928,456
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 358974 as yet unmatched pairs. 12841 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:104,654,746
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 353928 as yet unmatched pairs. 7789 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,064
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 352797 as yet unmatched pairs. 6647 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,469,909
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 350931 as yet unmatched pairs. 4779 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,352
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 366839 as yet unmatched pairs. 20686 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,163
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 347643 as yet unmatched pairs. 1486 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr14:105,928,733
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 346428 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:30,045,317
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 345035 as yet unmatched pairs. 26152 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:34,383,744
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 344412 as yet unmatched pairs. 25526 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:40,356,135
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 349863 as yet unmatched pairs. 30976 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:41,736,256
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 341309 as yet unmatched pairs. 22413 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:43,529,960
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 339411 as yet unmatched pairs. 20510 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:44,289,136
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 338740 as yet unmatched pairs. 19839 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:50,286,056
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 336825 as yet unmatched pairs. 17917 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:59,372,561
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 335720 as yet unmatched pairs. 16812 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:64,138,068
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 333989 as yet unmatched pairs. 15081 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr15:68,351,327
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 332453 as yet unmatched pairs. 13540 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:73,570,308
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 331024 as yet unmatched pairs. 12111 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,928
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 329757 as yet unmatched pairs. 10828 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,169
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 328761 as yet unmatched pairs. 9824 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:84,240,062
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 326111 as yet unmatched pairs. 7173 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:89,188,254
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 325426 as yet unmatched pairs. 6486 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:89,799,476
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 331571 as yet unmatched pairs. 12631 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:89,805,358
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 325424 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:90,440,543
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 320971 as yet unmatched pairs. 2030 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:101,046,075
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 319362 as yet unmatched pairs. 418 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr16:376,305
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 318484 as yet unmatched pairs. 59983 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr16:670,306
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 316145 as yet unmatched pairs. 57643 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:1,390,632
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 314202 as yet unmatched pairs. 55695 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:1,964,356
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 313070 as yet unmatched pairs. 54554 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:2,116,003
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 310502 as yet unmatched pairs. 51981 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,570
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 310053 as yet unmatched pairs. 51518 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,221
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 308120 as yet unmatched pairs. 49585 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:3,563,995
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 305340 as yet unmatched pairs. 46797 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,688,795
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 304738 as yet unmatched pairs. 46192 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:10,908,071
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 302581 as yet unmatched pairs. 44034 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:14,911,792
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 300930 as yet unmatched pairs. 42382 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,154,576
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 299755 as yet unmatched pairs. 41204 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,916
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 299538 as yet unmatched pairs. 40986 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,303
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 298975 as yet unmatched pairs. 40423 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,090
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 298523 as yet unmatched pairs. 39970 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,396
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 296694 as yet unmatched pairs. 38141 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,471
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 296545 as yet unmatched pairs. 37992 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,784
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 295571 as yet unmatched pairs. 37001 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:23,535,054
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 295077 as yet unmatched pairs. 36507 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:28,176,032
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 293638 as yet unmatched pairs. 35055 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,629
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 292746 as yet unmatched pairs. 34161 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,172
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 292196 as yet unmatched pairs. 33611 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,694,932
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 291856 as yet unmatched pairs. 33271 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,912,030
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 288863 as yet unmatched pairs. 30271 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:30,194,207
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 287680 as yet unmatched pairs. 29085 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,395,785
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 286476 as yet unmatched pairs. 27881 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr16:30,737,730
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 285728 as yet unmatched pairs. 27132 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,612
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 286344 as yet unmatched pairs. 27745 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:48,348,166
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 282020 as yet unmatched pairs. 23407 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,267
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 282945 as yet unmatched pairs. 24310 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:57,661,794
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 279889 as yet unmatched pairs. 21253 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:66,938,182
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 279319 as yet unmatched pairs. 20677 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:67,230,616
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 275769 as yet unmatched pairs. 17122 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:68,324,797
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 273903 as yet unmatched pairs. 15251 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:69,757,295
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 272038 as yet unmatched pairs. 13382 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:71,626,429
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 270962 as yet unmatched pairs. 12304 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:75,235,377
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 270527 as yet unmatched pairs. 11865 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:81,678,546
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 267857 as yet unmatched pairs. 9182 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:85,665,991
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 266478 as yet unmatched pairs. 7802 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,392
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 266927 as yet unmatched pairs. 8246 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:89,279,793
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 263454 as yet unmatched pairs. 4772 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:89,638,106
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 265070 as yet unmatched pairs. 6387 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 3s. Last read position: chr17:746,104
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 258599 as yet unmatched pairs. 69013 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:1,677,039
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 257358 as yet unmatched pairs. 67766 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:3,621,252
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 255538 as yet unmatched pairs. 65945 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:4,673,093
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 253818 as yet unmatched pairs. 64218 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:5,022,571
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 253580 as yet unmatched pairs. 63978 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,224,848
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 253846 as yet unmatched pairs. 64244 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,778
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 249147 as yet unmatched pairs. 59542 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:8,176,205
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 247410 as yet unmatched pairs. 57802 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:16,325,891
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 245857 as yet unmatched pairs. 56244 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:17,819,539
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 244746 as yet unmatched pairs. 55132 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:21,018,017
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 242952 as yet unmatched pairs. 53338 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:28,611,182
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 241224 as yet unmatched pairs. 51607 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:29,293,874
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 239908 as yet unmatched pairs. 50291 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr17:32,940,817
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 238652 as yet unmatched pairs. 49031 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:36,592,027
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 239911 as yet unmatched pairs. 50290 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:38,352,248
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 236698 as yet unmatched pairs. 47077 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr17:39,653,657
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 234906 as yet unmatched pairs. 45280 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,549
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 239550 as yet unmatched pairs. 49921 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:40,178,090
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 233089 as yet unmatched pairs. 43460 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:41,767,465
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 230631 as yet unmatched pairs. 41002 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 57s. Last read position: chr17:42,582,731
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 228446 as yet unmatched pairs. 38816 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 70s. Last read position: chr17:44,093,387
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 226848 as yet unmatched pairs. 37212 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:45,150,145
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 225128 as yet unmatched pairs. 35490 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:47,605,387
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 224137 as yet unmatched pairs. 34497 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:48,933,318
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 222173 as yet unmatched pairs. 32527 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,378
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 224757 as yet unmatched pairs. 35111 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,642
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 226743 as yet unmatched pairs. 37097 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,669,187
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 218913 as yet unmatched pairs. 29265 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:57,627,228
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 215708 as yet unmatched pairs. 26052 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,375
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 216302 as yet unmatched pairs. 26639 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:63,497,313
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 213883 as yet unmatched pairs. 24215 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr17:65,537,786
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 211970 as yet unmatched pairs. 22302 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:73,232,116
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 210566 as yet unmatched pairs. 20888 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:75,242,356
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 208538 as yet unmatched pairs. 18855 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:75,614,259
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 208927 as yet unmatched pairs. 19240 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:75,740,796
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 205788 as yet unmatched pairs. 16094 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:76,009,190
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 203623 as yet unmatched pairs. 13925 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,495
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 202282 as yet unmatched pairs. 12582 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,968
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 203337 as yet unmatched pairs. 13634 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:80,334,205
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 198943 as yet unmatched pairs. 9236 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,192,317
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 196526 as yet unmatched pairs. 6813 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,510
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 195600 as yet unmatched pairs. 5885 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:81,922,907
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 193292 as yet unmatched pairs. 3576 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:82,201,709
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 191298 as yet unmatched pairs. 1577 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr18:3,173,953
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 189295 as yet unmatched pairs. 8783 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr18:21,042,205
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 187869 as yet unmatched pairs. 7357 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr18:32,204,265
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 186362 as yet unmatched pairs. 5850 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr18:49,826,577
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 184864 as yet unmatched pairs. 4348 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr18:58,385,549
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 183425 as yet unmatched pairs. 2900 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr18:75,063,740
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 181637 as yet unmatched pairs. 1112 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr19:581,572
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 185385 as yet unmatched pairs. 88687 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:871,216
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 178871 as yet unmatched pairs. 82173 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,221,295
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 176445 as yet unmatched pairs. 79745 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:1,496,315
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 175352 as yet unmatched pairs. 78652 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:2,117,222
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 173217 as yet unmatched pairs. 76514 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:2,759,259
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 170768 as yet unmatched pairs. 74063 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:3,738,595
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 169017 as yet unmatched pairs. 72311 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:4,409,465
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 167251 as yet unmatched pairs. 70545 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:5,667,144
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 165586 as yet unmatched pairs. 68873 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:6,417,065
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 164362 as yet unmatched pairs. 67647 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:7,605,272
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 162187 as yet unmatched pairs. 65472 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr19:8,390,398
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 160572 as yet unmatched pairs. 63855 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:10,317,576
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 159423 as yet unmatched pairs. 62702 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,244
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 158012 as yet unmatched pairs. 61291 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,481
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 155758 as yet unmatched pairs. 59037 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:12,896,328
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 153819 as yet unmatched pairs. 57098 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:13,993,679
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 151766 as yet unmatched pairs. 55043 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:15,177,935
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 150369 as yet unmatched pairs. 53642 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:15,696,954
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 148619 as yet unmatched pairs. 51889 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:17,245,029
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 147698 as yet unmatched pairs. 50961 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:18,150,474
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 144594 as yet unmatched pairs. 47855 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:18,903,340
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 143514 as yet unmatched pairs. 46774 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:21,142,031
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 140992 as yet unmatched pairs. 44252 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:34,677,734
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 139573 as yet unmatched pairs. 42832 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:35,733,005
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 137312 as yet unmatched pairs. 40571 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:38,287,922
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 136584 as yet unmatched pairs. 39841 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr19:38,808,912
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 135466 as yet unmatched pairs. 38721 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,825,791
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 132539 as yet unmatched pairs. 35794 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,891,871
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 134978 as yet unmatched pairs. 38231 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,458
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 131133 as yet unmatched pairs. 34386 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:40,627,246
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 128922 as yet unmatched pairs. 32174 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,102
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 126855 as yet unmatched pairs. 30105 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,152
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 126562 as yet unmatched pairs. 29812 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr19:42,522,092
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 122913 as yet unmatched pairs. 26159 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:44,977,359
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 121148 as yet unmatched pairs. 24391 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:45,778,138
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 119722 as yet unmatched pairs. 22965 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:47,069,165
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 118228 as yet unmatched pairs. 21470 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:48,473,305
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 116717 as yet unmatched pairs. 19958 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,087
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 114980 as yet unmatched pairs. 18219 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:49,466,161
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 113093 as yet unmatched pairs. 16332 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:49,621,540
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 110825 as yet unmatched pairs. 14050 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,908,972
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 108891 as yet unmatched pairs. 12111 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:50,289,537
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 107487 as yet unmatched pairs. 10707 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:52,406,005
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 104947 as yet unmatched pairs. 8167 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:54,452,669
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 104301 as yet unmatched pairs. 7520 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:55,203,847
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 102916 as yet unmatched pairs. 6131 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:55,663,677
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 100080 as yet unmatched pairs. 3293 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:58,068,272
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 97927 as yet unmatched pairs. 1138 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:1,135,263
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 96433 as yet unmatched pairs. 24547 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:3,576,890
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 94721 as yet unmatched pairs. 22835 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:10,672,822
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 92962 as yet unmatched pairs. 21075 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:19,960,657
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 91299 as yet unmatched pairs. 19410 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr20:25,458,491
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 89575 as yet unmatched pairs. 17684 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:34,280,938
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 88309 as yet unmatched pairs. 16417 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:35,632,344
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 86853 as yet unmatched pairs. 14960 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr20:38,033,947
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 85097 as yet unmatched pairs. 13203 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:44,160,055
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 83390 as yet unmatched pairs. 11495 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:45,834,211
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 82038 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:49,247,876
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 80599 as yet unmatched pairs. 8703 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr20:57,407,549
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 79225 as yet unmatched pairs. 7329 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:62,133,356
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 77396 as yet unmatched pairs. 5500 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr20:62,813,516
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 75997 as yet unmatched pairs. 4100 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:63,691,745
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 73981 as yet unmatched pairs. 2083 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:5,163,565
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 71714 as yet unmatched pairs. 13471 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,707
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 70813 as yet unmatched pairs. 12561 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,366
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 70603 as yet unmatched pairs. 12341 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,601
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 69296 as yet unmatched pairs. 11034 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:26,112,007
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 71088 as yet unmatched pairs. 12826 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:33,755,341
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 66730 as yet unmatched pairs. 8468 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:39,264,735
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 65055 as yet unmatched pairs. 6793 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:42,818,462
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 63246 as yet unmatched pairs. 4984 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:44,573,827
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 61796 as yet unmatched pairs. 3534 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,651
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 60371 as yet unmatched pairs. 2109 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:17,812,544
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 58254 as yet unmatched pairs. 30787 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:20,116,514
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 57209 as yet unmatched pairs. 29741 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:21,957,294
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 54860 as yet unmatched pairs. 27392 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:23,882,569
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 53030 as yet unmatched pairs. 25562 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:25,170,827
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 52201 as yet unmatched pairs. 24733 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,348
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 52905 as yet unmatched pairs. 25437 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr22:30,369,498
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 48222 as yet unmatched pairs. 20754 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:31,804,175
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 46907 as yet unmatched pairs. 19439 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,215
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 45415 as yet unmatched pairs. 17947 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr22:36,517,346
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 44065 as yet unmatched pairs. 16597 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:37,650,652
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 42461 as yet unmatched pairs. 14993 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:38,300,914
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 40318 as yet unmatched pairs. 12850 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,423
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 39090 as yet unmatched pairs. 11622 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:41,437,086
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 37949 as yet unmatched pairs. 10481 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:42,592,001
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 35577 as yet unmatched pairs. 8109 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:46,356,046
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 33834 as yet unmatched pairs. 6366 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:50,240,250
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 32459 as yet unmatched pairs. 4989 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:50,459,581
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 30483 as yet unmatched pairs. 3013 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:50,627,351
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 28864 as yet unmatched pairs. 1394 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:11,760,474
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 26184 as yet unmatched pairs. 17445 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:24,788,479
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 24803 as yet unmatched pairs. 16061 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:43,744,925
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 24217 as yet unmatched pairs. 15473 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:48,686,090
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 22163 as yet unmatched pairs. 13419 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:51,901,765
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 20779 as yet unmatched pairs. 12033 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 3s. Last read position: chrX:54,811,290
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 19341 as yet unmatched pairs. 10595 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,400
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 18249 as yet unmatched pairs. 9503 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:85,282,275
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 16649 as yet unmatched pairs. 7903 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:118,393,179
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 15352 as yet unmatched pairs. 6606 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:130,074,129
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 14027 as yet unmatched pairs. 5281 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:153,736,174
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 12680 as yet unmatched pairs. 3932 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,044
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 11216 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:154,768,327
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 9713 as yet unmatched pairs. 964 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,121
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 8082 as yet unmatched pairs. 2259 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: GL000220.1:157,956
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 5939 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,168
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 5768 as yet unmatched pairs. 5746 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: KI270733.1:135,037
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 670 as yet unmatched pairs. 648 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,731
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 31 as yet unmatched pairs. 9 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 655142243 records. 0 pairs never matched.
INFO 2026-06-08 09:04:39 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139288; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:04:39 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:04:44 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:04:44 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:07 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 09:05:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,121
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1233
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,302
INFO 2026-06-08 09:06:16 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:06:16 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:09 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:07:12 MarkDuplicates After generateDuplicateIndexes freeMemory: 203995952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:07:12 MarkDuplicates Marking 322026235 records as duplicates.
INFO 2026-06-08 09:07:12 MarkDuplicates Found 20487622 optical duplicate clusters.
INFO 2026-06-08 09:07:12 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:07:28 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:19,210,075
INFO 2026-06-08 09:07:43 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:39,231,187
INFO 2026-06-08 09:07:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:109,668,458
INFO 2026-06-08 09:08:14 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:01s. Time for last 10,000,000: 15s. Last read position: chr1:153,991,585
INFO 2026-06-08 09:08:29 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr1:184,477,512
INFO 2026-06-08 09:08:44 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 15s. Last read position: chr1:229,518,323
INFO 2026-06-08 09:09:00 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:09:15 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 15s. Last read position: chr2:79,157,288
INFO 2026-06-08 09:09:31 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 15s. Last read position: chr2:162,011,800
INFO 2026-06-08 09:09:46 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 15s. Last read position: chr2:231,461,561
INFO 2026-06-08 09:10:01 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 15s. Last read position: chr3:46,579,959
INFO 2026-06-08 09:10:17 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:04s. Time for last 10,000,000: 15s. Last read position: chr3:101,849,761
INFO 2026-06-08 09:10:32 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 15s. Last read position: chr3:195,336,932
INFO 2026-06-08 09:10:48 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 16s. Last read position: chr4:76,309,759
INFO 2026-06-08 09:11:04 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 15s. Last read position: chr5:40,681,698
INFO 2026-06-08 09:11:19 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:07s. Time for last 10,000,000: 15s. Last read position: chr5:150,132,816
INFO 2026-06-08 09:11:34 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 15s. Last read position: chr6:2,959,220
INFO 2026-06-08 09:11:49 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 15s. Last read position: chr6:31,883,866
INFO 2026-06-08 09:12:05 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 15s. Last read position: chr6:53,065,692
INFO 2026-06-08 09:12:20 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 15s. Last read position: chr6:167,827,157
INFO 2026-06-08 09:12:35 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 15s. Last read position: chr7:65,979,874
INFO 2026-06-08 09:12:51 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 15s. Last read position: chr7:100,353,008
INFO 2026-06-08 09:13:06 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 15s. Last read position: chr7:129,711,534
INFO 2026-06-08 09:13:21 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:09s. Time for last 10,000,000: 15s. Last read position: chr8:25,392,844
INFO 2026-06-08 09:13:37 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 15s. Last read position: chr8:143,728,351
INFO 2026-06-08 09:13:51 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 14s. Last read position: chr8:143,862,010
INFO 2026-06-08 09:14:06 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 14s. Last read position: chr8:143,866,140
INFO 2026-06-08 09:14:21 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 15s. Last read position: chr9:35,609,073
INFO 2026-06-08 09:14:37 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 15s. Last read position: chr9:128,224,256
INFO 2026-06-08 09:14:52 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 15s. Last read position: chr10:32,033,919
INFO 2026-06-08 09:15:07 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 15s. Last read position: chr10:102,133,076
INFO 2026-06-08 09:15:23 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 15s. Last read position: chr10:122,606,106
INFO 2026-06-08 09:15:38 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 15s. Last read position: chr11:620,352
INFO 2026-06-08 09:15:53 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 14s. Last read position: chr11:2,302,875
INFO 2026-06-08 09:16:08 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 15s. Last read position: chr11:62,128,179
INFO 2026-06-08 09:16:23 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 15s. Last read position: chr11:67,499,796
INFO 2026-06-08 09:16:38 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:26s. Time for last 10,000,000: 15s. Last read position: chr11:118,663,384
INFO 2026-06-08 09:16:54 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 15s. Last read position: chr12:47,865,147
INFO 2026-06-08 09:17:09 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 15s. Last read position: chr12:57,283,891
INFO 2026-06-08 09:17:24 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 15s. Last read position: chr12:131,986,520
INFO 2026-06-08 09:17:39 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:27s. Time for last 10,000,000: 15s. Last read position: chr13:109,785,704
INFO 2026-06-08 09:17:54 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 15s. Last read position: chr14:57,208,649
INFO 2026-06-08 09:18:10 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 15s. Last read position: chr14:104,887,064
INFO 2026-06-08 09:18:25 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:12s. Time for last 10,000,000: 15s. Last read position: chr15:44,289,136
INFO 2026-06-08 09:18:40 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:28s. Time for last 10,000,000: 15s. Last read position: chr15:89,799,476
INFO 2026-06-08 09:18:55 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 15s. Last read position: chr16:2,769,221
INFO 2026-06-08 09:19:10 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 15s. Last read position: chr16:21,835,471
INFO 2026-06-08 09:19:25 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:13s. Time for last 10,000,000: 14s. Last read position: chr16:30,737,730
INFO 2026-06-08 09:19:41 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 15s. Last read position: chr16:75,235,377
INFO 2026-06-08 09:19:56 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:43s. Time for last 10,000,000: 15s. Last read position: chr17:5,022,571
INFO 2026-06-08 09:20:11 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 15s. Last read position: chr17:36,592,027
INFO 2026-06-08 09:20:26 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 15s. Last read position: chr17:48,933,318
INFO 2026-06-08 09:20:42 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:29s. Time for last 10,000,000: 15s. Last read position: chr17:75,614,259
INFO 2026-06-08 09:20:57 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 15s. Last read position: chr18:3,173,953
INFO 2026-06-08 09:21:12 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 15s. Last read position: chr19:2,117,222
INFO 2026-06-08 09:21:27 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 15s. Last read position: chr19:11,447,481
INFO 2026-06-08 09:21:42 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:30s. Time for last 10,000,000: 15s. Last read position: chr19:35,733,005
INFO 2026-06-08 09:21:57 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:45s. Time for last 10,000,000: 15s. Last read position: chr19:44,977,359
INFO 2026-06-08 09:22:13 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 15s. Last read position: chr19:54,452,669
INFO 2026-06-08 09:22:28 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 15s. Last read position: chr20:35,632,344
INFO 2026-06-08 09:22:43 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 14s. Last read position: chr21:8,258,707
INFO 2026-06-08 09:22:58 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 14s. Last read position: chr22:20,116,514
INFO 2026-06-08 09:23:13 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 15s. Last read position: chr22:38,300,914
INFO 2026-06-08 09:23:28 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 15s. Last read position: chrX:43,744,925
INFO 2026-06-08 09:23:43 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 15s. Last read position: chrX:154,768,327
INFO 2026-06-08 09:24:01 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:24:01 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:24:01 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:24:01 MarkDuplicates Before output close freeMemory: 203985240; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:01 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:24:01 MarkDuplicates After output close freeMemory: 104211112; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:24:01 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.54 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory