Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/cfd7c6c0ebacfaf4e4e2069eda64a6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/cfd7c6c0ebacfaf4e4e2069eda64a6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/db52afdc210325278e7a61e529d5a6/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/e22fcb141817595737d4c0ffd0d4aa/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
E2F3--LNC-LBCS
starfusion
arriba
GPAT4--ANK1
starfusion
arriba
EXOC6B--CTNNA2
starfusion
arriba
MBOAT1--LNC-LBCS
starfusion
arriba
SNX29--CIITA
starfusion
arriba
COP1--TRAPPC9
starfusion
arriba
RPARP-AS1--SUFU
starfusion
arriba
SAE1--CYP2B7P
starfusion
arriba
TLK2P1--AC110079.1
starfusion
BLACE--PKD1L2
starfusion
TLK2--AC240565.1
starfusion
DYRK1A--OSER1
starfusion
RYK--LINC02000
starfusion
E2F3--AL451080.1
arriba
E2F3--AL031767.1
arriba
TVP23C--CDRT4
arriba
BIRC6--PKD1L2
arriba
IGFL1P2--HIF3A
arriba
SMCHD1--LDLRAD4
arriba
ZC3H4--AL513478.3
arriba
ZC3H4--CDRT15P12
arriba
PCDHA7--PCDHAC2
arriba
PCDHA7--PCDHAC1
arriba
PCDHA7--PCDHA13
arriba
TAF1--ZCRB1P1
arriba
TAF1--RHOG2P
arriba
AL451080.1--MBOAT1
arriba
AL031767.1--MBOAT1
arriba
HERC2--AC024405.1
arriba
HERC2--OR4C50P
arriba
CDKAL1--LNC-LBCS
arriba
COX16--MIDEAS
arriba

  0%|          | 0/32 [00:00<?, ?it/s]
Processing E2F3--LNC-LBCS:   0%|          | 0/32 [00:00<?, ?it/s]
Processing E2F3--LNC-LBCS:   3%|▎         | 1/32 [00:00<00:03,  9.07it/s]
Processing GPAT4--ANK1:   3%|▎         | 1/32 [00:00<00:03,  9.07it/s]   
Processing GPAT4--ANK1:   6%|▋         | 2/32 [00:00<00:03,  9.32it/s]
Processing EXOC6B--CTNNA2:   6%|▋         | 2/32 [00:00<00:03,  9.32it/s]
Processing EXOC6B--CTNNA2:   9%|▉         | 3/32 [00:00<00:03,  9.42it/s]
Processing MBOAT1--LNC-LBCS:   9%|▉         | 3/32 [00:00<00:03,  9.42it/s]
Processing MBOAT1--LNC-LBCS:  12%|█▎        | 4/32 [00:00<00:02,  9.45it/s]
Processing SNX29--CIITA:  12%|█▎        | 4/32 [00:00<00:02,  9.45it/s]    
Processing SNX29--CIITA:  16%|█▌        | 5/32 [00:00<00:02,  9.48it/s]
Processing COP1--TRAPPC9:  16%|█▌        | 5/32 [00:00<00:02,  9.48it/s]
Processing COP1--TRAPPC9:  19%|█▉        | 6/32 [00:00<00:02,  9.50it/s]
Processing RPARP-AS1--SUFU:  19%|█▉        | 6/32 [00:00<00:02,  9.50it/s]
Processing RPARP-AS1--SUFU:  22%|██▏       | 7/32 [00:00<00:02,  9.53it/s]
Processing SAE1--CYP2B7P:  22%|██▏       | 7/32 [00:00<00:02,  9.53it/s]  
Processing SAE1--CYP2B7P:  25%|██▌       | 8/32 [00:00<00:02,  9.53it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 8/32 [00:00<00:02,  9.53it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 9/32 [00:00<00:02,  9.53it/s]
Processing BLACE--PKD1L2:  28%|██▊       | 9/32 [00:00<00:02,  9.53it/s]     
Processing BLACE--PKD1L2:  31%|███▏      | 10/32 [00:01<00:02,  9.53it/s]
Processing TLK2--AC240565.1:  31%|███▏      | 10/32 [00:01<00:02,  9.53it/s]
Processing TLK2--AC240565.1:  34%|███▍      | 11/32 [00:01<00:02,  9.52it/s]
Processing DYRK1A--OSER1:  34%|███▍      | 11/32 [00:01<00:02,  9.52it/s]   
Processing DYRK1A--OSER1:  38%|███▊      | 12/32 [00:01<00:02,  9.53it/s]
Processing RYK--LINC02000:  38%|███▊      | 12/32 [00:01<00:02,  9.53it/s]
Processing RYK--LINC02000:  41%|████      | 13/32 [00:01<00:01,  9.54it/s]
Processing E2F3--AL451080.1:  41%|████      | 13/32 [00:01<00:01,  9.54it/s]
Processing E2F3--AL451080.1:  44%|████▍     | 14/32 [00:01<00:01,  9.53it/s]
Processing E2F3--AL031767.1:  44%|████▍     | 14/32 [00:01<00:01,  9.53it/s]
Processing E2F3--AL031767.1:  47%|████▋     | 15/32 [00:01<00:01,  9.55it/s]
Processing TVP23C--CDRT4:  47%|████▋     | 15/32 [00:01<00:01,  9.55it/s]   
Processing TVP23C--CDRT4:  50%|█████     | 16/32 [00:01<00:01,  9.56it/s]
Processing BIRC6--PKD1L2:  50%|█████     | 16/32 [00:01<00:01,  9.56it/s]
Processing BIRC6--PKD1L2:  53%|█████▎    | 17/32 [00:01<00:01,  9.55it/s]
Processing IGFL1P2--HIF3A:  53%|█████▎    | 17/32 [00:01<00:01,  9.55it/s]
Processing IGFL1P2--HIF3A:  56%|█████▋    | 18/32 [00:01<00:01,  9.55it/s]
Processing SMCHD1--LDLRAD4:  56%|█████▋    | 18/32 [00:01<00:01,  9.55it/s]
Processing SMCHD1--LDLRAD4:  59%|█████▉    | 19/32 [00:01<00:01,  9.54it/s]
Processing ZC3H4--AL513478.3:  59%|█████▉    | 19/32 [00:02<00:01,  9.54it/s]
Processing ZC3H4--AL513478.3:  62%|██████▎   | 20/32 [00:02<00:01,  9.54it/s]
Processing ZC3H4--CDRT15P12:  62%|██████▎   | 20/32 [00:02<00:01,  9.54it/s] 
Processing ZC3H4--CDRT15P12:  66%|██████▌   | 21/32 [00:02<00:01,  9.54it/s]
Processing PCDHA7--PCDHAC2:  66%|██████▌   | 21/32 [00:02<00:01,  9.54it/s] 
Processing PCDHA7--PCDHAC2:  69%|██████▉   | 22/32 [00:02<00:01,  9.55it/s]
Processing PCDHA7--PCDHAC1:  69%|██████▉   | 22/32 [00:02<00:01,  9.55it/s]
Processing PCDHA7--PCDHAC1:  72%|███████▏  | 23/32 [00:02<00:00,  9.54it/s]
Processing PCDHA7--PCDHA13:  72%|███████▏  | 23/32 [00:02<00:00,  9.54it/s]
Processing PCDHA7--PCDHA13:  75%|███████▌  | 24/32 [00:02<00:00,  9.55it/s]
Processing TAF1--ZCRB1P1:  75%|███████▌  | 24/32 [00:02<00:00,  9.55it/s]  
Processing TAF1--ZCRB1P1:  78%|███████▊  | 25/32 [00:02<00:00,  9.56it/s]
Processing TAF1--RHOG2P:  78%|███████▊  | 25/32 [00:02<00:00,  9.56it/s] 
Processing TAF1--RHOG2P:  81%|████████▏ | 26/32 [00:02<00:00,  9.56it/s]
Processing AL451080.1--MBOAT1:  81%|████████▏ | 26/32 [00:02<00:00,  9.56it/s]
Processing AL451080.1--MBOAT1:  84%|████████▍ | 27/32 [00:02<00:00,  9.57it/s]
Processing AL031767.1--MBOAT1:  84%|████████▍ | 27/32 [00:02<00:00,  9.57it/s]
Processing AL031767.1--MBOAT1:  88%|████████▊ | 28/32 [00:02<00:00,  9.57it/s]
Processing HERC2--AC024405.1:  88%|████████▊ | 28/32 [00:02<00:00,  9.57it/s] 
Processing HERC2--AC024405.1:  91%|█████████ | 29/32 [00:03<00:00,  9.57it/s]
Processing HERC2--OR4C50P:  91%|█████████ | 29/32 [00:03<00:00,  9.57it/s]   
Processing HERC2--OR4C50P:  94%|█████████▍| 30/32 [00:03<00:00,  9.55it/s]
Processing CDKAL1--LNC-LBCS:  94%|█████████▍| 30/32 [00:03<00:00,  9.55it/s]
Processing CDKAL1--LNC-LBCS:  97%|█████████▋| 31/32 [00:03<00:00,  9.53it/s]
Processing COX16--MIDEAS:  97%|█████████▋| 31/32 [00:03<00:00,  9.53it/s]   
Processing COX16--MIDEAS: 100%|██████████| 32/32 [00:03<00:00,  9.52it/s]
Processing COX16--MIDEAS: 100%|██████████| 32/32 [00:03<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory