File Info
- Filename
- aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/cfd7c6c0ebacfaf4e4e2069eda64a6/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.fusions.csv
- Size
- 7.9 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3abdf4-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| E2F3--LNC-LBCS | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:20403832#chr6:19538967,reading-frame: out-of-frame,type: inversion,split_reads1: 151,split_reads2: 43,discordant_mates: 1,coverage1: 7317,coverage2: 137,confidence: high | position: chr6:20403832:+#chr6:19538967:-,junction_reads: 204,spanning_reads: 1,ffmp: 0.8557 | |
| GPAT4--ANK1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:41610810#chr8:41706241,reading-frame: out-of-frame,type: inversion,split_reads1: 41,split_reads2: 95,discordant_mates: 0,coverage1: 1081,coverage2: 518,confidence: high | position: chr8:41610810:+#chr8:41706241:-,junction_reads: 139,spanning_reads: 0,ffmp: 0.5802 | |
| EXOC6B--CTNNA2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:72513132#chr2:80393211,reading-frame: in-frame,type: inversion,split_reads1: 26,split_reads2: 37,discordant_mates: 0,coverage1: 1596,coverage2: 137,confidence: high | position: chr2:72513132:-#chr2:80393211:+,junction_reads: 70,spanning_reads: 0,ffmp: 0.2922 | |
| MBOAT1--LNC-LBCS | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:20212136#chr6:19538967,reading-frame: out-of-frame,type: deletion,split_reads1: 45,split_reads2: 16,discordant_mates: 1,coverage1: 1920,coverage2: 137,confidence: high | position: chr6:20212136:-#chr6:19538967:-,junction_reads: 63,spanning_reads: 1,ffmp: 0.2672 | |
| SNX29--CIITA | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr16:12129758#chr16:10904744,reading-frame: out-of-frame,type: duplication,split_reads1: 21,split_reads2: 20,discordant_mates: 0,coverage1: 1554,coverage2: 1879,confidence: high | position: chr16:12129758:+#chr16:10904744:+,junction_reads: 61,spanning_reads: 0,ffmp: 0.2546 |
| COP1--TRAPPC9 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:176027572#chr8:140371180,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 22,discordant_mates: 0,coverage1: 1342,coverage2: 977,confidence: high | position: chr1:176027572:-#chr8:140371180:-,junction_reads: 45,spanning_reads: 0,ffmp: 0.1878 | |
| RPARP-AS1--SUFU | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:102450330#chr10:102615268,reading-frame: .,type: deletion/read-through,split_reads1: 13,split_reads2: 15,discordant_mates: 0,coverage1: 37,coverage2: 719,confidence: high | position: chr10:102450330:+#chr10:102615268:+,junction_reads: 33,spanning_reads: 0,ffmp: 0.1377 | |
| SAE1--CYP2B7P | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:47155213#chr19:40936097,reading-frame: out-of-frame,type: duplication,split_reads1: 3,split_reads2: 13,discordant_mates: 0,coverage1: 2066,coverage2: 101,confidence: high | position: chr19:47155213:+#chr19:40936097:+,junction_reads: 26,spanning_reads: 0,ffmp: 0.1085 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.0792 | ||
| BLACE--PKD1L2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:155367899:-#chr16:81141525:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0543 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0093 | ||
| DYRK1A--OSER1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:37420384:+#chr20:44206998:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0417 | ||
| RYK--LINC02000 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:134211508:-#chr3:134055656:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0334 | ||
| E2F3--AL451080.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:20403832#chr6:21347251,reading-frame: out-of-frame,type: deletion,split_reads1: 49,split_reads2: 40,discordant_mates: 0,coverage1: 7317,coverage2: 86,confidence: high | ||
| E2F3--AL031767.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:20403832#chr6:21347251,reading-frame: out-of-frame,type: deletion,split_reads1: 49,split_reads2: 40,discordant_mates: 0,coverage1: 7317,coverage2: 86,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 21,split_reads2: 21,discordant_mates: 0,coverage1: 882,coverage2: 229,confidence: high | |
| BIRC6--PKD1L2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:32447889#chr16:81141525,reading-frame: .,type: translocation/3'-3',split_reads1: 5,split_reads2: 14,discordant_mates: 0,coverage1: 15,coverage2: 842,confidence: high | ||
| IGFL1P2--HIF3A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:46260672#chr19:46303898,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 3,split_reads2: 15,discordant_mates: 0,coverage1: 58,coverage2: 532,confidence: high | ||
| SMCHD1--LDLRAD4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:2674145#chr18:13325166,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 10,split_reads2: 4,discordant_mates: 0,coverage1: 2416,coverage2: 10,confidence: high | ||
| ZC3H4--AL513478.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:47086384#chr9:66235815,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 2,discordant_mates: 0,coverage1: 1599,coverage2: 8,confidence: high | ||
| ZC3H4--CDRT15P12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:47086384#chr9:66235815,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 2,discordant_mates: 0,coverage1: 1599,coverage2: 8,confidence: high | ||
| PCDHA7--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140836738#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 258,coverage2: 248,confidence: high | ||
| PCDHA7--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140836738#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 258,coverage2: 248,confidence: high | ||
| PCDHA7--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140836738#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 258,coverage2: 248,confidence: high | ||
| TAF1--ZCRB1P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:71406746#chrX:71334178,reading-frame: out-of-frame,type: duplication,split_reads1: 11,split_reads2: 1,discordant_mates: 0,coverage1: 664,coverage2: 4,confidence: high | ||
| TAF1--RHOG2P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:71406746#chrX:71334178,reading-frame: out-of-frame,type: duplication,split_reads1: 11,split_reads2: 1,discordant_mates: 0,coverage1: 664,coverage2: 4,confidence: high | ||
| AL451080.1--MBOAT1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:21348283#chr6:20152769,reading-frame: .,type: inversion,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 5,coverage2: 1106,confidence: high | ||
| AL031767.1--MBOAT1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:21348283#chr6:20152769,reading-frame: .,type: inversion,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 5,coverage2: 1106,confidence: high | ||
| HERC2--AC024405.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:28113071#chr11:50721471,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 306,coverage2: 3,confidence: high | ||
| HERC2--OR4C50P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:28113071#chr11:50721471,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 1,discordant_mates: 0,coverage1: 306,coverage2: 3,confidence: high | ||
| CDKAL1--LNC-LBCS | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:21201274#chr6:19729439,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 8,split_reads2: 3,discordant_mates: 0,coverage1: 794,coverage2: 9,confidence: high | ||
| COX16--MIDEAS | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:70342658#chr14:73716935,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 1536,coverage2: 18,confidence: high |
33 rows