#==================================================
#All numbers are READ count
#==================================================

Total records:                          643364926

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        47825190
Unmapped reads:                         2721959
mapq < mapq_cut (non-unique):           18622277

mapq >= mapq_cut (unique):              574195500
Read-1:                                 287256677
Read-2:                                 286938823
Reads map to '+':                       287112637
Reads map to '-':                       287082863
Non-splice reads:                       298885460
Splice reads:                           275310040
Reads mapped in proper pairs:           572451228
Proper-paired reads map to different chrom:0