File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8580f479c391bf5ef81d28ab885c51/.command.log
Size
2.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3b436b-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/bdd7ddebfbb3e4bd12f8d69ff54334/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8580f479c391bf5ef81d28ab885c51/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8580f479c391bf5ef81d28ab885c51/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/7af02ea37b948a0aff49d9f7d4c547/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/5 [00:00<?, ?it/s]TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
arriba
POLE2--POLE2
arriba
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba

Processing TLK2P1--AC110079.1:   0%|          | 0/5 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 1/5 [00:00<00:00,  9.16it/s]
Processing STX16--NPEPL1:  20%|██        | 1/5 [00:00<00:00,  9.16it/s]     
Processing STX16--NPEPL1:  40%|████      | 2/5 [00:00<00:00,  9.31it/s]
Processing POLE2--POLE2:  40%|████      | 2/5 [00:00<00:00,  9.31it/s] 
Processing POLE2--POLE2:  60%|██████    | 3/5 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  60%|██████    | 3/5 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  80%|████████  | 4/5 [00:00<00:00,  9.37it/s]
Processing AC015911.9--SLFN12L:  80%|████████  | 4/5 [00:00<00:00,  9.37it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 5/5 [00:00<00:00,  9.37it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 5/5 [00:00<00:00,  9.34it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory