Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/05ba6cc46dc8ab27a514a873620eca/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/22f9000b46232d11c80617bbd5e643/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/22f9000b46232d11c80617bbd5e643/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 8543
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 8543
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:8543
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARID4B--OR2L3 HAVANA gene 1041 32980 . + . FI_gene_label "ARID4B^ENSG00000054267.22" ; ID "ARID4B--OR2L3^ARID4B^ENSG00000054267.22" ; ccdsid "CCDS31061.1" ; exon_id "ENSE00003603903.1" ; exon_number 2 ; gene_id "ARID4B--OR2L3^ARID4B^ENSG00000054267.22" ; gene_name ARID4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000039621.9" ; havana_transcript "OTTHUMT00000492322.2" ; hgnc_id "HGNC:15550" ; level 2 ; orig_coord_info "chr1,235326914,235326919,-" ; protein_id "ENSP00000264183.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID4B--OR2L3^ENST00000264183.9" ; transcript_name "ARID4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID4B--OR2L3 HAVANA mRNA 1041 32980 . + . FI_gene_label "ARID4B^ENSG00000054267.22" ; ID "ARID4B--OR2L3^ENST00000264183.9" ; Parent "ARID4B--OR2L3^ARID4B^ENSG00000054267.22" ; ccdsid "CCDS31061.1" ; exon_id "ENSE00003603903.1" ; exon_number 2 ; gene_id "ARID4B--OR2L3^ARID4B^ENSG00000054267.22" ; gene_name ARID4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000039621.9" ; havana_transcript "OTTHUMT00000492322.2" ; hgnc_id "HGNC:15550" ; level 2 ; orig_coord_info "chr1,235326914,235326919,-" ; protein_id "ENSP00000264183.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID4B--OR2L3^ENST00000264183.9" ; transcript_name "ARID4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARID4B--OR2L3 HAVANA gene 45355 51283 . + . FI_gene_label "OR2L3^ENSG00000198128.4" ; ID "ARID4B--OR2L3^OR2L3^ENSG00000198128.4" ; ccdsid "CCDS31104.1" ; exon_id "ENSE00002392655.2" ; exon_number 2 ; gene_id "ARID4B--OR2L3^OR2L3^ENSG00000198128.4" ; gene_name OR2L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040195.3" ; havana_transcript "OTTHUMT00000492833.1" ; hgnc_id "HGNC:15009" ; level 2 ; orig_coord_info "chr1,248060682,248061617,+" ; protein_id "ENSP00000353044.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID4B--OR2L3^ENST00000359959.4" ; transcript_name "OR2L3-201" ; transcript_support_level NA ; transcript_type protein_coding
ARID4B--OR2L3 HAVANA mRNA 45355 51283 . + . FI_gene_label "OR2L3^ENSG00000198128.4" ; ID "ARID4B--OR2L3^ENST00000359959.4" ; Parent "ARID4B--OR2L3^OR2L3^ENSG00000198128.4" ; ccdsid "CCDS31104.1" ; exon_id "ENSE00002392655.2" ; exon_number 2 ; gene_id "ARID4B--OR2L3^OR2L3^ENSG00000198128.4" ; gene_name OR2L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040195.3" ; havana_transcript "OTTHUMT00000492833.1" ; hgnc_id "HGNC:15009" ; level 2 ; orig_coord_info "chr1,248060682,248061617,+" ; protein_id "ENSP00000353044.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID4B--OR2L3^ENST00000359959.4" ; transcript_name "OR2L3-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
BMP7--DHX35 HAVANA gene 20545 45929 . + . FI_gene_label "DHX35^ENSG00000101452.15" ; ID "BMP7--DHX35^DHX35^ENSG00000101452.15" ; ccdsid "CCDS13310.1" ; exon_id "ENSE00002216121.2" ; exon_number 1 ; gene_id "BMP7--DHX35^DHX35^ENSG00000101452.15" ; gene_name DHX35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032463.9" ; havana_transcript "OTTHUMT00000079212.3" ; hgnc_id "HGNC:15861" ; level 2 ; orig_coord_info "chr20,38962368,38962407,+" ; protein_id "ENSP00000252011.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BMP7--DHX35^ENST00000252011.8" ; transcript_name "DHX35-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--DHX35 HAVANA mRNA 20545 45929 . + . FI_gene_label "DHX35^ENSG00000101452.15" ; ID "BMP7--DHX35^ENST00000252011.8" ; Parent "BMP7--DHX35^DHX35^ENSG00000101452.15" ; ccdsid "CCDS13310.1" ; exon_id "ENSE00002216121.2" ; exon_number 1 ; gene_id "BMP7--DHX35^DHX35^ENSG00000101452.15" ; gene_name DHX35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032463.9" ; havana_transcript "OTTHUMT00000079212.3" ; hgnc_id "HGNC:15861" ; level 2 ; orig_coord_info "chr20,38962368,38962407,+" ; protein_id "ENSP00000252011.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BMP7--DHX35^ENST00000252011.8" ; transcript_name "DHX35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BMP7--DHX35 HAVANA gene 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--DHX35^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--DHX35^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--DHX35^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--DHX35 HAVANA mRNA 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--DHX35^ENST00000395863.8" ; Parent "BMP7--DHX35^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--DHX35^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--DHX35^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BMP7--LINC01734 HAVANA gene 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--LINC01734^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--LINC01734^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--LINC01734^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
BMP7--LINC01734 HAVANA mRNA 1001 17499 . + . FI_gene_label "BMP7^ENSG00000101144.13" ; ID "BMP7--LINC01734^ENST00000395863.8" ; Parent "BMP7--LINC01734^BMP7^ENSG00000101144.13" ; ccdsid "CCDS13455.1" ; exon_id "ENSE00001908937.2" ; exon_number 1 ; gene_id "BMP7--LINC01734^BMP7^ENSG00000101144.13" ; gene_name BMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032812.5" ; havana_transcript "OTTHUMT00000079831.3" ; hgnc_id "HGNC:1074" ; level 1 ; orig_coord_info "chr20,57265705,57266122,-" ; protein_id "ENSP00000379204.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BMP7--LINC01734^ENST00000395863.8" ; transcript_name "BMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP131--TSHZ2 HAVANA gene 1001 19522 . + . FI_gene_label "CEP131^ENSG00000141577.14" ; ID "CEP131--TSHZ2^CEP131^ENSG00000141577.14" ; ccdsid "CCDS82215.1" ; exon_id "ENSE00001244870.1" ; exon_number 2 ; gene_id "CEP131--TSHZ2^CEP131^ENSG00000141577.14" ; gene_name CEP131 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132728.5" ; havana_transcript "OTTHUMT00000256070.1" ; hgnc_id "HGNC:29511" ; level 2 ; orig_coord_info "chr17,81219880,81220056,-" ; protein_id "ENSP00000269392.4" ; tag basic appris_principal_4 CCDS ; transcript_id "CEP131--TSHZ2^ENST00000269392.8" ; transcript_name "CEP131-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP131--TSHZ2 HAVANA mRNA 1001 19522 . + . FI_gene_label "CEP131^ENSG00000141577.14" ; ID "CEP131--TSHZ2^ENST00000269392.8" ; Parent "CEP131--TSHZ2^CEP131^ENSG00000141577.14" ; ccdsid "CCDS82215.1" ; exon_id "ENSE00001244870.1" ; exon_number 2 ; gene_id "CEP131--TSHZ2^CEP131^ENSG00000141577.14" ; gene_name CEP131 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132728.5" ; havana_transcript "OTTHUMT00000256070.1" ; hgnc_id "HGNC:29511" ; level 2 ; orig_coord_info "chr17,81219880,81220056,-" ; protein_id "ENSP00000269392.4" ; tag basic appris_principal_4 CCDS ; transcript_id "CEP131--TSHZ2^ENST00000269392.8" ; transcript_name "CEP131-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP131--TSHZ2 ENSEMBL gene 24865 28957 . + . FI_gene_label "TSHZ2^ENSG00000182463.16" ; ID "CEP131--TSHZ2^TSHZ2^ENSG00000182463.16" ; exon_id "ENSE00003593980.2" ; exon_number 1 ; gene_id "CEP131--TSHZ2^TSHZ2^ENSG00000182463.16" ; gene_name TSHZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033058.9" ; hgnc_id "HGNC:13010" ; level 3 ; orig_coord_info "chr20,53185646,53185676,+" ; protein_id "ENSP00000333114.5" ; tag basic ; transcript_id "CEP131--TSHZ2^ENST00000329613.7" ; transcript_name "TSHZ2-201" ; transcript_support_level 4 ; transcript_type protein_coding
CEP131--TSHZ2 ENSEMBL mRNA 24865 28957 . + . FI_gene_label "TSHZ2^ENSG00000182463.16" ; ID "CEP131--TSHZ2^ENST00000329613.7" ; Parent "CEP131--TSHZ2^TSHZ2^ENSG00000182463.16" ; exon_id "ENSE00003593980.2" ; exon_number 1 ; gene_id "CEP131--TSHZ2^TSHZ2^ENSG00000182463.16" ; gene_name TSHZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033058.9" ; hgnc_id "HGNC:13010" ; level 3 ; orig_coord_info "chr20,53185646,53185676,+" ; protein_id "ENSP00000333114.5" ; tag basic ; transcript_id "CEP131--TSHZ2^ENST00000329613.7" ; transcript_name "TSHZ2-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
CLPX--PDCD7 HAVANA gene 21576 27187 . + . FI_gene_label "PDCD7^ENSG00000090470.15" ; ID "CLPX--PDCD7^PDCD7^ENSG00000090470.15" ; ccdsid "CCDS10201.1" ; exon_id "ENSE00001211785.4" ; exon_number 1 ; gene_id "CLPX--PDCD7^PDCD7^ENSG00000090470.15" ; gene_name PDCD7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133117.5" ; havana_transcript "OTTHUMT00000256784.3" ; hgnc_id "HGNC:8767" ; level 2 ; orig_coord_info "chr15,65132912,65133781,-" ; protein_id "ENSP00000204549.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPX--PDCD7^ENST00000204549.9" ; transcript_name "PDCD7-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLPX--PDCD7 HAVANA mRNA 21576 27187 . + . FI_gene_label "PDCD7^ENSG00000090470.15" ; ID "CLPX--PDCD7^ENST00000204549.9" ; Parent "CLPX--PDCD7^PDCD7^ENSG00000090470.15" ; ccdsid "CCDS10201.1" ; exon_id "ENSE00001211785.4" ; exon_number 1 ; gene_id "CLPX--PDCD7^PDCD7^ENSG00000090470.15" ; gene_name PDCD7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133117.5" ; havana_transcript "OTTHUMT00000256784.3" ; hgnc_id "HGNC:8767" ; level 2 ; orig_coord_info "chr15,65132912,65133781,-" ; protein_id "ENSP00000204549.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPX--PDCD7^ENST00000204549.9" ; transcript_name "PDCD7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLPX--PDCD7 HAVANA gene 1001 18575 . + . FI_gene_label "CLPX^ENSG00000166855.9" ; ID "CLPX--PDCD7^CLPX^ENSG00000166855.9" ; ccdsid "CCDS10202.1" ; exon_id "ENSE00003627303.1" ; exon_number 1 ; gene_id "CLPX--PDCD7^CLPX^ENSG00000166855.9" ; gene_name CLPX ; gene_type protein_coding ; havana_gene "OTTHUMG00000133139.4" ; havana_transcript "OTTHUMT00000256828.2" ; hgnc_id "HGNC:2088" ; level 2 ; orig_coord_info "chr15,65185075,65185153,-" ; protein_id "ENSP00000300107.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPX--PDCD7^ENST00000300107.7" ; transcript_name "CLPX-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLPX--PDCD7 HAVANA mRNA 1001 18575 . + . FI_gene_label "CLPX^ENSG00000166855.9" ; ID "CLPX--PDCD7^ENST00000300107.7" ; Parent "CLPX--PDCD7^CLPX^ENSG00000166855.9" ; ccdsid "CCDS10202.1" ; exon_id "ENSE00003627303.1" ; exon_number 1 ; gene_id "CLPX--PDCD7^CLPX^ENSG00000166855.9" ; gene_name CLPX ; gene_type protein_coding ; havana_gene "OTTHUMG00000133139.4" ; havana_transcript "OTTHUMT00000256828.2" ; hgnc_id "HGNC:2088" ; level 2 ; orig_coord_info "chr15,65185075,65185153,-" ; protein_id "ENSP00000300107.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPX--PDCD7^ENST00000300107.7" ; transcript_name "CLPX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--EDEM2 HAVANA gene 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--EDEM2^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--EDEM2^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--EDEM2^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--EDEM2 HAVANA mRNA 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--EDEM2^ENST00000269122.8" ; Parent "CLTC--EDEM2^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--EDEM2^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--EDEM2^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--EDEM2 HAVANA gene 38760 49842 . + . FI_gene_label "EDEM2^ENSG00000088298.13" ; ID "CLTC--EDEM2^EDEM2^ENSG00000088298.13" ; ccdsid "CCDS46592.1" ; exon_id "ENSE00001463664.3" ; exon_number 1 ; gene_id "CLTC--EDEM2^EDEM2^ENSG00000088298.13" ; gene_name EDEM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032322.5" ; havana_transcript "OTTHUMT00000471967.1" ; hgnc_id "HGNC:15877" ; level 2 ; orig_coord_info "chr20,35147152,35147258,-" ; protein_id "ENSP00000363615.2" ; tag basic CCDS ; transcript_id "CLTC--EDEM2^ENST00000374491.3" ; transcript_name "EDEM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--EDEM2 HAVANA mRNA 38760 49842 . + . FI_gene_label "EDEM2^ENSG00000088298.13" ; ID "CLTC--EDEM2^ENST00000374491.3" ; Parent "CLTC--EDEM2^EDEM2^ENSG00000088298.13" ; ccdsid "CCDS46592.1" ; exon_id "ENSE00001463664.3" ; exon_number 1 ; gene_id "CLTC--EDEM2^EDEM2^ENSG00000088298.13" ; gene_name EDEM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032322.5" ; havana_transcript "OTTHUMT00000471967.1" ; hgnc_id "HGNC:15877" ; level 2 ; orig_coord_info "chr20,35147152,35147258,-" ; protein_id "ENSP00000363615.2" ; tag basic CCDS ; transcript_id "CLTC--EDEM2^ENST00000374491.3" ; transcript_name "EDEM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^ENST00000276326.9" ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FER1L4--PIGU HAVANA gene 32704 47314 . + . FI_gene_label "PIGU^ENSG00000101464.11" ; ID "FER1L4--PIGU^PIGU^ENSG00000101464.11" ; ccdsid "CCDS13239.1" ; exon_id "ENSE00003900529.1" ; exon_number 1 ; gene_id "FER1L4--PIGU^PIGU^ENSG00000101464.11" ; gene_name PIGU ; gene_type protein_coding ; havana_gene "OTTHUMG00000032304.6" ; havana_transcript "OTTHUMT00000078795.2" ; hgnc_id "HGNC:15791" ; level 2 ; orig_coord_info "chr20,34676956,34677085,-" ; protein_id "ENSP00000217446.3" ; tag mRNA_start_NF MANE_Select appris_principal_1 CCDS ; transcript_id "FER1L4--PIGU^ENST00000217446.8" ; transcript_name "PIGU-201" ; transcript_support_level 1 ; transcript_type protein_coding
FER1L4--PIGU HAVANA mRNA 32704 47314 . + . FI_gene_label "PIGU^ENSG00000101464.11" ; ID "FER1L4--PIGU^ENST00000217446.8" ; Parent "FER1L4--PIGU^PIGU^ENSG00000101464.11" ; ccdsid "CCDS13239.1" ; exon_id "ENSE00003900529.1" ; exon_number 1 ; gene_id "FER1L4--PIGU^PIGU^ENSG00000101464.11" ; gene_name PIGU ; gene_type protein_coding ; havana_gene "OTTHUMG00000032304.6" ; havana_transcript "OTTHUMT00000078795.2" ; hgnc_id "HGNC:15791" ; level 2 ; orig_coord_info "chr20,34676956,34677085,-" ; protein_id "ENSP00000217446.3" ; tag mRNA_start_NF MANE_Select appris_principal_1 CCDS ; transcript_id "FER1L4--PIGU^ENST00000217446.8" ; transcript_name "PIGU-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HDGFL3--ARNT2 HAVANA gene 1001 21383 . + . FI_gene_label "HDGFL3^ENSG00000166503.9" ; ID "HDGFL3--ARNT2^HDGFL3^ENSG00000166503.9" ; ccdsid "CCDS32314.1" ; exon_id "ENSE00002622954.2" ; exon_number 1 ; gene_id "HDGFL3--ARNT2^HDGFL3^ENSG00000166503.9" ; gene_name HDGFL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172685.3" ; havana_transcript "OTTHUMT00000419898.3" ; hgnc_id "HGNC:24937" ; level 2 ; orig_coord_info "chr15,83207331,83207414,-" ; protein_id "ENSP00000299633.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HDGFL3--ARNT2^ENST00000299633.7" ; transcript_name "HDGFL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HDGFL3--ARNT2 HAVANA mRNA 1001 21383 . + . FI_gene_label "HDGFL3^ENSG00000166503.9" ; ID "HDGFL3--ARNT2^ENST00000299633.7" ; Parent "HDGFL3--ARNT2^HDGFL3^ENSG00000166503.9" ; ccdsid "CCDS32314.1" ; exon_id "ENSE00002622954.2" ; exon_number 1 ; gene_id "HDGFL3--ARNT2^HDGFL3^ENSG00000166503.9" ; gene_name HDGFL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172685.3" ; havana_transcript "OTTHUMT00000419898.3" ; hgnc_id "HGNC:24937" ; level 2 ; orig_coord_info "chr15,83207331,83207414,-" ; protein_id "ENSP00000299633.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HDGFL3--ARNT2^ENST00000299633.7" ; transcript_name "HDGFL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HDGFL3--ARNT2 HAVANA gene 28420 56613 . + . FI_gene_label "ARNT2^ENSG00000172379.21" ; ID "HDGFL3--ARNT2^ARNT2^ENSG00000172379.21" ; ccdsid "CCDS32307.1" ; exon_id "ENSE00002170549.2" ; exon_number 1 ; gene_id "HDGFL3--ARNT2^ARNT2^ENSG00000172379.21" ; gene_name ARNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165478.9" ; havana_transcript "OTTHUMT00000384389.3" ; hgnc_id "HGNC:16876" ; level 2 ; orig_coord_info "chr15,80404516,80404546,+" ; protein_id "ENSP00000307479.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "HDGFL3--ARNT2^ENST00000303329.9" ; transcript_name "ARNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HDGFL3--ARNT2 HAVANA mRNA 28420 56613 . + . FI_gene_label "ARNT2^ENSG00000172379.21" ; ID "HDGFL3--ARNT2^ENST00000303329.9" ; Parent "HDGFL3--ARNT2^ARNT2^ENSG00000172379.21" ; ccdsid "CCDS32307.1" ; exon_id "ENSE00002170549.2" ; exon_number 1 ; gene_id "HDGFL3--ARNT2^ARNT2^ENSG00000172379.21" ; gene_name ARNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165478.9" ; havana_transcript "OTTHUMT00000384389.3" ; hgnc_id "HGNC:16876" ; level 2 ; orig_coord_info "chr15,80404516,80404546,+" ; protein_id "ENSP00000307479.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "HDGFL3--ARNT2^ENST00000303329.9" ; transcript_name "ARNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INTS1--JAZF1 HAVANA gene 34419 49785 . + . FI_gene_label "JAZF1^ENSG00000153814.13" ; ID "INTS1--JAZF1^JAZF1^ENSG00000153814.13" ; ccdsid "CCDS5416.1" ; exon_id "ENSE00001335148.6" ; exon_number 1 ; gene_id "INTS1--JAZF1^JAZF1^ENSG00000153814.13" ; gene_name JAZF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128545.8" ; havana_transcript "OTTHUMT00000250382.3" ; hgnc_id "HGNC:28917" ; level 2 ; orig_coord_info "chr7,28180463,28180577,-" ; protein_id "ENSP00000283928.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INTS1--JAZF1^ENST00000283928.10" ; transcript_name "JAZF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
INTS1--JAZF1 HAVANA mRNA 34419 49785 . + . FI_gene_label "JAZF1^ENSG00000153814.13" ; ID "INTS1--JAZF1^ENST00000283928.10" ; Parent "INTS1--JAZF1^JAZF1^ENSG00000153814.13" ; ccdsid "CCDS5416.1" ; exon_id "ENSE00001335148.6" ; exon_number 1 ; gene_id "INTS1--JAZF1^JAZF1^ENSG00000153814.13" ; gene_name JAZF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128545.8" ; havana_transcript "OTTHUMT00000250382.3" ; hgnc_id "HGNC:28917" ; level 2 ; orig_coord_info "chr7,28180463,28180577,-" ; protein_id "ENSP00000283928.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INTS1--JAZF1^ENST00000283928.10" ; transcript_name "JAZF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INTS1--JAZF1 HAVANA gene 1001 31418 . + . FI_gene_label "INTS1^ENSG00000164880.16" ; ID "INTS1--JAZF1^INTS1^ENSG00000164880.16" ; ccdsid "CCDS47526.1" ; exon_id "ENSE00003571544.1" ; exon_number 2 ; gene_id "INTS1--JAZF1^INTS1^ENSG00000164880.16" ; gene_name INTS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151449.5" ; havana_transcript "OTTHUMT00000323683.2" ; hgnc_id "HGNC:24555" ; level 2 ; orig_coord_info "chr7,1503903,1503960,-" ; protein_id "ENSP00000385722.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INTS1--JAZF1^ENST00000404767.8" ; transcript_name "INTS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
INTS1--JAZF1 HAVANA mRNA 1001 31418 . + . FI_gene_label "INTS1^ENSG00000164880.16" ; ID "INTS1--JAZF1^ENST00000404767.8" ; Parent "INTS1--JAZF1^INTS1^ENSG00000164880.16" ; ccdsid "CCDS47526.1" ; exon_id "ENSE00003571544.1" ; exon_number 2 ; gene_id "INTS1--JAZF1^INTS1^ENSG00000164880.16" ; gene_name INTS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151449.5" ; havana_transcript "OTTHUMT00000323683.2" ; hgnc_id "HGNC:24555" ; level 2 ; orig_coord_info "chr7,1503903,1503960,-" ; protein_id "ENSP00000385722.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INTS1--JAZF1^ENST00000404767.8" ; transcript_name "INTS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ITCH--RALGAPB HAVANA gene 1072 35781 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "ITCH--RALGAPB^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "ITCH--RALGAPB^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "ITCH--RALGAPB^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITCH--RALGAPB HAVANA mRNA 1072 35781 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "ITCH--RALGAPB^ENST00000262650.10" ; Parent "ITCH--RALGAPB^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "ITCH--RALGAPB^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "ITCH--RALGAPB^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITCH--RALGAPB HAVANA gene 45959 85033 . + . FI_gene_label "RALGAPB^ENSG00000170471.15" ; ID "ITCH--RALGAPB^RALGAPB^ENSG00000170471.15" ; ccdsid "CCDS13305.1" ; exon_id "ENSE00003629914.1" ; exon_number 2 ; gene_id "ITCH--RALGAPB^RALGAPB^ENSG00000170471.15" ; gene_name RALGAPB ; gene_type protein_coding ; havana_gene "OTTHUMG00000140270.6" ; havana_transcript "OTTHUMT00000079191.3" ; hgnc_id "HGNC:29221" ; level 2 ; orig_coord_info "chr20,38488433,38488618,+" ; protein_id "ENSP00000262879.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "ITCH--RALGAPB^ENST00000262879.11" ; transcript_name "RALGAPB-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITCH--RALGAPB HAVANA mRNA 45959 85033 . + . FI_gene_label "RALGAPB^ENSG00000170471.15" ; ID "ITCH--RALGAPB^ENST00000262879.11" ; Parent "ITCH--RALGAPB^RALGAPB^ENSG00000170471.15" ; ccdsid "CCDS13305.1" ; exon_id "ENSE00003629914.1" ; exon_number 2 ; gene_id "ITCH--RALGAPB^RALGAPB^ENSG00000170471.15" ; gene_name RALGAPB ; gene_type protein_coding ; havana_gene "OTTHUMG00000140270.6" ; havana_transcript "OTTHUMT00000079191.3" ; hgnc_id "HGNC:29221" ; level 2 ; orig_coord_info "chr20,38488433,38488618,+" ; protein_id "ENSP00000262879.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "ITCH--RALGAPB^ENST00000262879.11" ; transcript_name "RALGAPB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K1--PGPEP1L HAVANA gene 1076 14150 . + . FI_gene_label "MAP2K1^ENSG00000169032.10" ; ID "MAP2K1--PGPEP1L^MAP2K1^ENSG00000169032.10" ; ccdsid "CCDS10216.1" ; exon_id "ENSE00001257104.5" ; exon_number 1 ; gene_id "MAP2K1--PGPEP1L^MAP2K1^ENSG00000169032.10" ; gene_name MAP2K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133196.5" ; havana_transcript "OTTHUMT00000256906.4" ; hgnc_id "HGNC:6840" ; level 2 ; orig_coord_info "chr15,66387348,66387427,+" ; protein_id "ENSP00000302486.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--PGPEP1L^ENST00000307102.10" ; transcript_name "MAP2K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K1--PGPEP1L HAVANA mRNA 1076 14150 . + . FI_gene_label "MAP2K1^ENSG00000169032.10" ; ID "MAP2K1--PGPEP1L^ENST00000307102.10" ; Parent "MAP2K1--PGPEP1L^MAP2K1^ENSG00000169032.10" ; ccdsid "CCDS10216.1" ; exon_id "ENSE00001257104.5" ; exon_number 1 ; gene_id "MAP2K1--PGPEP1L^MAP2K1^ENSG00000169032.10" ; gene_name MAP2K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133196.5" ; havana_transcript "OTTHUMT00000256906.4" ; hgnc_id "HGNC:6840" ; level 2 ; orig_coord_info "chr15,66387348,66387427,+" ; protein_id "ENSP00000302486.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--PGPEP1L^ENST00000307102.10" ; transcript_name "MAP2K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K1--PGPEP1L HAVANA gene 18679 24453 . + . FI_gene_label "PGPEP1L^ENSG00000183571.11" ; ID "MAP2K1--PGPEP1L^PGPEP1L^ENSG00000183571.11" ; ccdsid "CCDS53977.1" ; exon_id "ENSE00001402658.2" ; exon_number 2 ; gene_id "MAP2K1--PGPEP1L^PGPEP1L^ENSG00000183571.11" ; gene_name PGPEP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000171896.3" ; havana_transcript "OTTHUMT00000415703.1" ; hgnc_id "HGNC:27080" ; level 2 ; orig_coord_info "chr15,99001187,99001207,-" ; protein_id "ENSP00000368199.6" ; tag basic appris_principal_1 CCDS ; transcript_id "MAP2K1--PGPEP1L^ENST00000378919.6" ; transcript_name "PGPEP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K1--PGPEP1L HAVANA mRNA 18679 24453 . + . FI_gene_label "PGPEP1L^ENSG00000183571.11" ; ID "MAP2K1--PGPEP1L^ENST00000378919.6" ; Parent "MAP2K1--PGPEP1L^PGPEP1L^ENSG00000183571.11" ; ccdsid "CCDS53977.1" ; exon_id "ENSE00001402658.2" ; exon_number 2 ; gene_id "MAP2K1--PGPEP1L^PGPEP1L^ENSG00000183571.11" ; gene_name PGPEP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000171896.3" ; havana_transcript "OTTHUMT00000415703.1" ; hgnc_id "HGNC:27080" ; level 2 ; orig_coord_info "chr15,99001187,99001207,-" ; protein_id "ENSP00000368199.6" ; tag basic appris_principal_1 CCDS ; transcript_id "MAP2K1--PGPEP1L^ENST00000378919.6" ; transcript_name "PGPEP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PACSIN2--SLCO2B1 HAVANA gene 1001 21816 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "PACSIN2--SLCO2B1^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "PACSIN2--SLCO2B1^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PACSIN2--SLCO2B1^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PACSIN2--SLCO2B1 HAVANA mRNA 1001 21816 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "PACSIN2--SLCO2B1^ENST00000263246.8" ; Parent "PACSIN2--SLCO2B1^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "PACSIN2--SLCO2B1^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PACSIN2--SLCO2B1^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PACSIN2--SLCO2B1 HAVANA gene 29452 51532 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "PACSIN2--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "PACSIN2--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PACSIN2--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PACSIN2--SLCO2B1 HAVANA mRNA 29452 51532 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "PACSIN2--SLCO2B1^ENST00000289575.10" ; Parent "PACSIN2--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "PACSIN2--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PACSIN2--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARD6B--NR1D1 HAVANA gene 11691 17827 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "PARD6B--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "PARD6B--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARD6B--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARD6B--NR1D1 HAVANA mRNA 11691 17827 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "PARD6B--NR1D1^ENST00000246672.4" ; Parent "PARD6B--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "PARD6B--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARD6B--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARD6B--NR1D1 HAVANA gene 1001 7579 . + . FI_gene_label "PARD6B^ENSG00000124171.9" ; ID "PARD6B--NR1D1^PARD6B^ENSG00000124171.9" ; ccdsid "CCDS33485.1" ; exon_id "ENSE00001455652.2" ; exon_number 1 ; gene_id "PARD6B--NR1D1^PARD6B^ENSG00000124171.9" ; gene_name PARD6B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032732.3" ; havana_transcript "OTTHUMT00000079697.3" ; hgnc_id "HGNC:16245" ; level 2 ; orig_coord_info "chr20,50731787,50731852,+" ; protein_id "ENSP00000360672.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARD6B--NR1D1^ENST00000371610.7" ; transcript_name "PARD6B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARD6B--NR1D1 HAVANA mRNA 1001 7579 . + . FI_gene_label "PARD6B^ENSG00000124171.9" ; ID "PARD6B--NR1D1^ENST00000371610.7" ; Parent "PARD6B--NR1D1^PARD6B^ENSG00000124171.9" ; ccdsid "CCDS33485.1" ; exon_id "ENSE00001455652.2" ; exon_number 1 ; gene_id "PARD6B--NR1D1^PARD6B^ENSG00000124171.9" ; gene_name PARD6B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032732.3" ; havana_transcript "OTTHUMT00000079697.3" ; hgnc_id "HGNC:16245" ; level 2 ; orig_coord_info "chr20,50731787,50731852,+" ; protein_id "ENSP00000360672.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARD6B--NR1D1^ENST00000371610.7" ; transcript_name "PARD6B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARP6--NRG4 ENSEMBL gene 4126 23776 . + . FI_gene_label "PARP6^ENSG00000137817.17" ; ID "PARP6--NRG4^PARP6^ENSG00000137817.17" ; exon_id "ENSE00003733135.1" ; exon_number 1 ; gene_id "PARP6--NRG4^PARP6^ENSG00000137817.17" ; gene_name PARP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133443.5" ; hgnc_id "HGNC:26921" ; level 3 ; orig_coord_info "chr15,72267475,72267477,-" ; protein_id "ENSP00000260376.7" ; tag basic ; transcript_id "PARP6--NRG4^ENST00000260376.11" ; transcript_name "PARP6-201" ; transcript_support_level 5 ; transcript_type protein_coding
PARP6--NRG4 ENSEMBL mRNA 4126 23776 . + . FI_gene_label "PARP6^ENSG00000137817.17" ; ID "PARP6--NRG4^ENST00000260376.11" ; Parent "PARP6--NRG4^PARP6^ENSG00000137817.17" ; exon_id "ENSE00003733135.1" ; exon_number 1 ; gene_id "PARP6--NRG4^PARP6^ENSG00000137817.17" ; gene_name PARP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133443.5" ; hgnc_id "HGNC:26921" ; level 3 ; orig_coord_info "chr15,72267475,72267477,-" ; protein_id "ENSP00000260376.7" ; tag basic ; transcript_id "PARP6--NRG4^ENST00000260376.11" ; transcript_name "PARP6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PARP6--NRG4 HAVANA gene 32580 46281 . + . FI_gene_label "NRG4^ENSG00000169752.17" ; ID "PARP6--NRG4^NRG4^ENSG00000169752.17" ; ccdsid "CCDS10288.1" ; exon_id "ENSE00002190732.1" ; exon_number 2 ; gene_id "PARP6--NRG4^NRG4^ENSG00000169752.17" ; gene_name NRG4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142917.4" ; havana_transcript "OTTHUMT00000286632.2" ; hgnc_id "HGNC:29862" ; level 2 ; orig_coord_info "chr15,76011221,76011230,-" ; protein_id "ENSP00000378367.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARP6--NRG4^ENST00000394907.8" ; transcript_name "NRG4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARP6--NRG4 HAVANA mRNA 32580 46281 . + . FI_gene_label "NRG4^ENSG00000169752.17" ; ID "PARP6--NRG4^ENST00000394907.8" ; Parent "PARP6--NRG4^NRG4^ENSG00000169752.17" ; ccdsid "CCDS10288.1" ; exon_id "ENSE00002190732.1" ; exon_number 2 ; gene_id "PARP6--NRG4^NRG4^ENSG00000169752.17" ; gene_name NRG4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142917.4" ; havana_transcript "OTTHUMT00000286632.2" ; hgnc_id "HGNC:29862" ; level 2 ; orig_coord_info "chr15,76011221,76011230,-" ; protein_id "ENSP00000378367.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARP6--NRG4^ENST00000394907.8" ; transcript_name "NRG4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PLEKHM1P1--KCNQ2 HAVANA gene 25838 45538 . + . FI_gene_label "KCNQ2^ENSG00000075043.19" ; ID "PLEKHM1P1--KCNQ2^KCNQ2^ENSG00000075043.19" ; ccdsid "CCDS13521.1" ; exon_id "ENSE00003709554.2" ; exon_number 1 ; gene_id "PLEKHM1P1--KCNQ2^KCNQ2^ENSG00000075043.19" ; gene_name KCNQ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033049.15" ; havana_transcript "OTTHUMT00000080356.2" ; hgnc_id "HGNC:6296" ; level 2 ; orig_coord_info "chr20,63472168,63472463,-" ; protein_id "ENSP00000345523.5" ; tag basic CCDS ; transcript_id "PLEKHM1P1--KCNQ2^ENST00000344425.7" ; transcript_name "KCNQ2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHM1P1--KCNQ2 HAVANA mRNA 25838 45538 . + . FI_gene_label "KCNQ2^ENSG00000075043.19" ; ID "PLEKHM1P1--KCNQ2^ENST00000344425.7" ; Parent "PLEKHM1P1--KCNQ2^KCNQ2^ENSG00000075043.19" ; ccdsid "CCDS13521.1" ; exon_id "ENSE00003709554.2" ; exon_number 1 ; gene_id "PLEKHM1P1--KCNQ2^KCNQ2^ENSG00000075043.19" ; gene_name KCNQ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033049.15" ; havana_transcript "OTTHUMT00000080356.2" ; hgnc_id "HGNC:6296" ; level 2 ; orig_coord_info "chr20,63472168,63472463,-" ; protein_id "ENSP00000345523.5" ; tag basic CCDS ; transcript_id "PLEKHM1P1--KCNQ2^ENST00000344425.7" ; transcript_name "KCNQ2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM34--OR2L3 HAVANA gene 14355 20283 . + . FI_gene_label "OR2L3^ENSG00000198128.4" ; ID "RBM34--OR2L3^OR2L3^ENSG00000198128.4" ; ccdsid "CCDS31104.1" ; exon_id "ENSE00002392655.2" ; exon_number 2 ; gene_id "RBM34--OR2L3^OR2L3^ENSG00000198128.4" ; gene_name OR2L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040195.3" ; havana_transcript "OTTHUMT00000492833.1" ; hgnc_id "HGNC:15009" ; level 2 ; orig_coord_info "chr1,248060682,248061617,+" ; protein_id "ENSP00000353044.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM34--OR2L3^ENST00000359959.4" ; transcript_name "OR2L3-201" ; transcript_support_level NA ; transcript_type protein_coding
RBM34--OR2L3 HAVANA mRNA 14355 20283 . + . FI_gene_label "OR2L3^ENSG00000198128.4" ; ID "RBM34--OR2L3^ENST00000359959.4" ; Parent "RBM34--OR2L3^OR2L3^ENSG00000198128.4" ; ccdsid "CCDS31104.1" ; exon_id "ENSE00002392655.2" ; exon_number 2 ; gene_id "RBM34--OR2L3^OR2L3^ENSG00000198128.4" ; gene_name OR2L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040195.3" ; havana_transcript "OTTHUMT00000492833.1" ; hgnc_id "HGNC:15009" ; level 2 ; orig_coord_info "chr1,248060682,248061617,+" ; protein_id "ENSP00000353044.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM34--OR2L3^ENST00000359959.4" ; transcript_name "OR2L3-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
RBM34--OR2L3 HAVANA gene 1034 11354 . + . FI_gene_label "RBM34^ENSG00000188739.15" ; ID "RBM34--OR2L3^RBM34^ENSG00000188739.15" ; ccdsid "CCDS41477.2" ; exon_id "ENSE00003571384.2" ; exon_number 1 ; gene_id "RBM34--OR2L3^RBM34^ENSG00000188739.15" ; gene_name RBM34 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039620.10" ; havana_transcript "OTTHUMT00000100146.2" ; hgnc_id "HGNC:28965" ; level 2 ; orig_coord_info "chr1,235161174,235161226,-" ; protein_id "ENSP00000386226.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM34--OR2L3^ENST00000408888.8" ; transcript_name "RBM34-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM34--OR2L3 HAVANA mRNA 1034 11354 . + . FI_gene_label "RBM34^ENSG00000188739.15" ; ID "RBM34--OR2L3^ENST00000408888.8" ; Parent "RBM34--OR2L3^RBM34^ENSG00000188739.15" ; ccdsid "CCDS41477.2" ; exon_id "ENSE00003571384.2" ; exon_number 1 ; gene_id "RBM34--OR2L3^RBM34^ENSG00000188739.15" ; gene_name RBM34 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039620.10" ; havana_transcript "OTTHUMT00000100146.2" ; hgnc_id "HGNC:28965" ; level 2 ; orig_coord_info "chr1,235161174,235161226,-" ; protein_id "ENSP00000386226.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM34--OR2L3^ENST00000408888.8" ; transcript_name "RBM34-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF213--SRCIN1 HAVANA gene 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--SRCIN1^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--SRCIN1^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--SRCIN1^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF213--SRCIN1 HAVANA mRNA 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--SRCIN1^ENST00000319921.4" ; Parent "RNF213--SRCIN1^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--SRCIN1^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--SRCIN1^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF213--SRCIN1 HAVANA gene 82416 90519 . + . FI_gene_label "SRCIN1^ENSG00000277363.5" ; ID "RNF213--SRCIN1^SRCIN1^ENSG00000277363.5" ; exon_id "ENSE00003740142.1" ; exon_number 1 ; gene_id "RNF213--SRCIN1^SRCIN1^ENSG00000277363.5" ; gene_name SRCIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188493.4" ; havana_transcript "OTTHUMT00000477426.2" ; hgnc_id "HGNC:29506" ; level 2 ; orig_coord_info "chr17,38604479,38604602,-" ; protein_id "ENSP00000478342.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "RNF213--SRCIN1^ENST00000612431.1" ; transcript_name "SRCIN1-211" ; transcript_support_level 1 ; transcript_type protein_coding
RNF213--SRCIN1 HAVANA mRNA 82416 90519 . + . FI_gene_label "SRCIN1^ENSG00000277363.5" ; ID "RNF213--SRCIN1^ENST00000612431.1" ; Parent "RNF213--SRCIN1^SRCIN1^ENSG00000277363.5" ; exon_id "ENSE00003740142.1" ; exon_number 1 ; gene_id "RNF213--SRCIN1^SRCIN1^ENSG00000277363.5" ; gene_name SRCIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188493.4" ; havana_transcript "OTTHUMT00000477426.2" ; hgnc_id "HGNC:29506" ; level 2 ; orig_coord_info "chr17,38604479,38604602,-" ; protein_id "ENSP00000478342.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "RNF213--SRCIN1^ENST00000612431.1" ; transcript_name "SRCIN1-211" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPN2--CNBD2 HAVANA gene 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--CNBD2^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--CNBD2^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--CNBD2^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPN2--CNBD2 HAVANA mRNA 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--CNBD2^ENST00000237530.11" ; Parent "RPN2--CNBD2^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--CNBD2^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--CNBD2^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPN2--CNBD2 HAVANA gene 27586 42194 . + . FI_gene_label "CNBD2^ENSG00000149646.12" ; ID "RPN2--CNBD2^CNBD2^ENSG00000149646.12" ; ccdsid "CCDS13270.1" ; exon_id "ENSE00001049118.3" ; exon_number 1 ; gene_id "RPN2--CNBD2^CNBD2^ENSG00000149646.12" ; gene_name CNBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032371.6" ; havana_transcript "OTTHUMT00000078962.1" ; hgnc_id "HGNC:16145" ; level 2 ; orig_coord_info "chr20,35968763,35968813,+" ; protein_id "ENSP00000340954.1" ; tag basic appris_principal_4 CCDS ; transcript_id "RPN2--CNBD2^ENST00000349339.5" ; transcript_name "CNBD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPN2--CNBD2 HAVANA mRNA 27586 42194 . + . FI_gene_label "CNBD2^ENSG00000149646.12" ; ID "RPN2--CNBD2^ENST00000349339.5" ; Parent "RPN2--CNBD2^CNBD2^ENSG00000149646.12" ; ccdsid "CCDS13270.1" ; exon_id "ENSE00001049118.3" ; exon_number 1 ; gene_id "RPN2--CNBD2^CNBD2^ENSG00000149646.12" ; gene_name CNBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032371.6" ; havana_transcript "OTTHUMT00000078962.1" ; hgnc_id "HGNC:16145" ; level 2 ; orig_coord_info "chr20,35968763,35968813,+" ; protein_id "ENSP00000340954.1" ; tag basic appris_principal_4 CCDS ; transcript_id "RPN2--CNBD2^ENST00000349339.5" ; transcript_name "CNBD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPN2--NORAD HAVANA gene 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--NORAD^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--NORAD^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--NORAD^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPN2--NORAD HAVANA mRNA 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--NORAD^ENST00000237530.11" ; Parent "RPN2--NORAD^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--NORAD^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--NORAD^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--AL118523.1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--AL118523.1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--AL118523.1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--AL118523.1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--AL118523.1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--AL118523.1^ENST00000225577.9" ; Parent "RPS6KB1--AL118523.1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--AL118523.1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--AL118523.1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--AL162291.1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--AL162291.1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--AL162291.1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--AL162291.1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--AL162291.1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--AL162291.1^ENST00000225577.9" ; Parent "RPS6KB1--AL162291.1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--AL162291.1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--AL162291.1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--HSPE1P1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--HSPE1P1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--HSPE1P1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--HSPE1P1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--HSPE1P1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--HSPE1P1^ENST00000225577.9" ; Parent "RPS6KB1--HSPE1P1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--HSPE1P1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--HSPE1P1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--NKILA HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--NKILA^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--NKILA^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--NKILA^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--NKILA HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--NKILA^ENST00000225577.9" ; Parent "RPS6KB1--NKILA^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--NKILA^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--NKILA^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--VMP1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--VMP1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--VMP1^ENST00000225577.9" ; Parent "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--VMP1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--VMP1 HAVANA gene 25459 44161 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--VMP1 HAVANA mRNA 25459 44161 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "RPS6KB1--VMP1^ENST00000262291.9" ; Parent "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "RPS6KB1--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMURF2--CSH1 HAVANA gene 1001 27278 . + . FI_gene_label "SMURF2^ENSG00000108854.16" ; ID "SMURF2--CSH1^SMURF2^ENSG00000108854.16" ; ccdsid "CCDS32707.1" ; exon_id "ENSE00001331843.8" ; exon_number 1 ; gene_id "SMURF2--CSH1^SMURF2^ENSG00000108854.16" ; gene_name SMURF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179189.3" ; havana_transcript "OTTHUMT00000445227.2" ; hgnc_id "HGNC:16809" ; level 2 ; orig_coord_info "chr17,64661829,64661880,-" ; protein_id "ENSP00000262435.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2--CSH1^ENST00000262435.14" ; transcript_name "SMURF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMURF2--CSH1 HAVANA mRNA 1001 27278 . + . FI_gene_label "SMURF2^ENSG00000108854.16" ; ID "SMURF2--CSH1^ENST00000262435.14" ; Parent "SMURF2--CSH1^SMURF2^ENSG00000108854.16" ; ccdsid "CCDS32707.1" ; exon_id "ENSE00001331843.8" ; exon_number 1 ; gene_id "SMURF2--CSH1^SMURF2^ENSG00000108854.16" ; gene_name SMURF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179189.3" ; havana_transcript "OTTHUMT00000445227.2" ; hgnc_id "HGNC:16809" ; level 2 ; orig_coord_info "chr17,64661829,64661880,-" ; protein_id "ENSP00000262435.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2--CSH1^ENST00000262435.14" ; transcript_name "SMURF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMURF2--CSH1 HAVANA gene 30366 32022 . + . FI_gene_label "CSH1^ENSG00000136488.15" ; ID "SMURF2--CSH1^CSH1^ENSG00000136488.15" ; ccdsid "CCDS11649.1" ; exon_id "ENSE00002504378.2" ; exon_number 1 ; gene_id "SMURF2--CSH1^CSH1^ENSG00000136488.15" ; gene_name CSH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171947.2" ; havana_transcript "OTTHUMT00000416040.2" ; hgnc_id "HGNC:2440" ; level 2 ; orig_coord_info "chr17,63896502,63896511,-" ; protein_id "ENSP00000316416.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2--CSH1^ENST00000316193.13" ; transcript_name "CSH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMURF2--CSH1 HAVANA mRNA 30366 32022 . + . FI_gene_label "CSH1^ENSG00000136488.15" ; ID "SMURF2--CSH1^ENST00000316193.13" ; Parent "SMURF2--CSH1^CSH1^ENSG00000136488.15" ; ccdsid "CCDS11649.1" ; exon_id "ENSE00002504378.2" ; exon_number 1 ; gene_id "SMURF2--CSH1^CSH1^ENSG00000136488.15" ; gene_name CSH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171947.2" ; havana_transcript "OTTHUMT00000416040.2" ; hgnc_id "HGNC:2440" ; level 2 ; orig_coord_info "chr17,63896502,63896511,-" ; protein_id "ENSP00000316416.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMURF2--CSH1^ENST00000316193.13" ; transcript_name "CSH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SYNGR1--TTLL1 HAVANA gene 1025 5030 . + . FI_gene_label "SYNGR1^ENSG00000100321.15" ; ID "SYNGR1--TTLL1^SYNGR1^ENSG00000100321.15" ; exon_id "ENSE00001278573.3" ; exon_number 1 ; gene_id "SYNGR1--TTLL1^SYNGR1^ENSG00000100321.15" ; gene_name SYNGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030978.6" ; havana_transcript "OTTHUMT00000259136.1" ; hgnc_id "HGNC:11498" ; level 1 ; orig_coord_info "chr22,39350011,39350109,+" ; protein_id "ENSP00000216155.7" ; tag basic exp_conf ; transcript_id "SYNGR1--TTLL1^ENST00000216155.11" ; transcript_name "SYNGR1-201" ; transcript_support_level 3 ; transcript_type protein_coding
SYNGR1--TTLL1 HAVANA mRNA 1025 5030 . + . FI_gene_label "SYNGR1^ENSG00000100321.15" ; ID "SYNGR1--TTLL1^ENST00000216155.11" ; Parent "SYNGR1--TTLL1^SYNGR1^ENSG00000100321.15" ; exon_id "ENSE00001278573.3" ; exon_number 1 ; gene_id "SYNGR1--TTLL1^SYNGR1^ENSG00000100321.15" ; gene_name SYNGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030978.6" ; havana_transcript "OTTHUMT00000259136.1" ; hgnc_id "HGNC:11498" ; level 1 ; orig_coord_info "chr22,39350011,39350109,+" ; protein_id "ENSP00000216155.7" ; tag basic exp_conf ; transcript_id "SYNGR1--TTLL1^ENST00000216155.11" ; transcript_name "SYNGR1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
SYNGR1--TTLL1 HAVANA gene 15295 26728 . + . FI_gene_label "TTLL1^ENSG00000100271.17" ; ID "SYNGR1--TTLL1^TTLL1^ENSG00000100271.17" ; ccdsid "CCDS14043.1" ; exon_id "ENSE00002241278.1" ; exon_number 3 ; gene_id "SYNGR1--TTLL1^TTLL1^ENSG00000100271.17" ; gene_name TTLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150699.4" ; havana_transcript "OTTHUMT00000319659.2" ; hgnc_id "HGNC:1312" ; level 2 ; orig_coord_info "chr22,43075474,43075586,-" ; protein_id "ENSP00000266254.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYNGR1--TTLL1^ENST00000266254.12" ; transcript_name "TTLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYNGR1--TTLL1 HAVANA mRNA 15295 26728 . + . FI_gene_label "TTLL1^ENSG00000100271.17" ; ID "SYNGR1--TTLL1^ENST00000266254.12" ; Parent "SYNGR1--TTLL1^TTLL1^ENSG00000100271.17" ; ccdsid "CCDS14043.1" ; exon_id "ENSE00002241278.1" ; exon_number 3 ; gene_id "SYNGR1--TTLL1^TTLL1^ENSG00000100271.17" ; gene_name TTLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150699.4" ; havana_transcript "OTTHUMT00000319659.2" ; hgnc_id "HGNC:1312" ; level 2 ; orig_coord_info "chr22,43075474,43075586,-" ; protein_id "ENSP00000266254.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYNGR1--TTLL1^ENST00000266254.12" ; transcript_name "TTLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TFB2M--CNST HAVANA gene 12514 17490 . + . FI_gene_label "CNST^ENSG00000162852.14" ; ID "TFB2M--CNST^CNST^ENSG00000162852.14" ; exon_id "ENSE00003475396.1" ; exon_number 2 ; gene_id "TFB2M--CNST^CNST^ENSG00000162852.14" ; gene_name CNST ; gene_type protein_coding ; havana_gene "OTTHUMG00000040090.4" ; havana_transcript "OTTHUMT00000096782.2" ; hgnc_id "HGNC:26486" ; level 2 ; orig_coord_info "chr1,246591563,246591941,+" ; protein_id "ENSP00000355468.1" ; tag basic ; transcript_id "TFB2M--CNST^ENST00000366511.1" ; transcript_name "CNST-201" ; transcript_support_level 3 ; transcript_type protein_coding
TFB2M--CNST HAVANA mRNA 12514 17490 . + . FI_gene_label "CNST^ENSG00000162852.14" ; ID "TFB2M--CNST^ENST00000366511.1" ; Parent "TFB2M--CNST^CNST^ENSG00000162852.14" ; exon_id "ENSE00003475396.1" ; exon_number 2 ; gene_id "TFB2M--CNST^CNST^ENSG00000162852.14" ; gene_name CNST ; gene_type protein_coding ; havana_gene "OTTHUMG00000040090.4" ; havana_transcript "OTTHUMT00000096782.2" ; hgnc_id "HGNC:26486" ; level 2 ; orig_coord_info "chr1,246591563,246591941,+" ; protein_id "ENSP00000355468.1" ; tag basic ; transcript_id "TFB2M--CNST^ENST00000366511.1" ; transcript_name "CNST-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
TFB2M--CNST HAVANA gene 1001 9443 . + . FI_gene_label "TFB2M^ENSG00000162851.8" ; ID "TFB2M--CNST^TFB2M^ENSG00000162851.8" ; ccdsid "CCDS1627.1" ; exon_id "ENSE00001441896.5" ; exon_number 1 ; gene_id "TFB2M--CNST^TFB2M^ENSG00000162851.8" ; gene_name TFB2M ; gene_type protein_coding ; havana_gene "OTTHUMG00000040091.3" ; havana_transcript "OTTHUMT00000096673.3" ; hgnc_id "HGNC:18559" ; level 2 ; orig_coord_info "chr1,246565826,246566138,-" ; protein_id "ENSP00000355471.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TFB2M--CNST^ENST00000366514.5" ; transcript_name "TFB2M-201" ; transcript_support_level 1 ; transcript_type protein_coding
TFB2M--CNST HAVANA mRNA 1001 9443 . + . FI_gene_label "TFB2M^ENSG00000162851.8" ; ID "TFB2M--CNST^ENST00000366514.5" ; Parent "TFB2M--CNST^TFB2M^ENSG00000162851.8" ; ccdsid "CCDS1627.1" ; exon_id "ENSE00001441896.5" ; exon_number 1 ; gene_id "TFB2M--CNST^TFB2M^ENSG00000162851.8" ; gene_name TFB2M ; gene_type protein_coding ; havana_gene "OTTHUMG00000040091.3" ; havana_transcript "OTTHUMT00000096673.3" ; hgnc_id "HGNC:18559" ; level 2 ; orig_coord_info "chr1,246565826,246566138,-" ; protein_id "ENSP00000355471.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TFB2M--CNST^ENST00000366514.5" ; transcript_name "TFB2M-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMX2--MS4A6E HAVANA gene 1001 5581 . + . FI_gene_label "TMX2^ENSG00000213593.10" ; ID "TMX2--MS4A6E^TMX2^ENSG00000213593.10" ; ccdsid "CCDS7967.1" ; exon_id "ENSE00003846837.1" ; exon_number 1 ; gene_id "TMX2--MS4A6E^TMX2^ENSG00000213593.10" ; gene_name TMX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167200.3" ; havana_transcript "OTTHUMT00000393708.2" ; hgnc_id "HGNC:30739" ; level 2 ; orig_coord_info "chr11,57712619,57712807,+" ; protein_id "ENSP00000278422.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MS4A6E^ENST00000278422.9" ; transcript_name "TMX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMX2--MS4A6E HAVANA mRNA 1001 5581 . + . FI_gene_label "TMX2^ENSG00000213593.10" ; ID "TMX2--MS4A6E^ENST00000278422.9" ; Parent "TMX2--MS4A6E^TMX2^ENSG00000213593.10" ; ccdsid "CCDS7967.1" ; exon_id "ENSE00003846837.1" ; exon_number 1 ; gene_id "TMX2--MS4A6E^TMX2^ENSG00000213593.10" ; gene_name TMX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167200.3" ; havana_transcript "OTTHUMT00000393708.2" ; hgnc_id "HGNC:30739" ; level 2 ; orig_coord_info "chr11,57712619,57712807,+" ; protein_id "ENSP00000278422.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MS4A6E^ENST00000278422.9" ; transcript_name "TMX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMX2--MS4A6E HAVANA gene 8582 13463 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "TMX2--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "TMX2--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TMX2--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMX2--MS4A6E HAVANA mRNA 8582 13463 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "TMX2--MS4A6E^ENST00000300182.8" ; Parent "TMX2--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "TMX2--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TMX2--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC6--MIPOL1 ENSEMBL gene 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--MIPOL1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTC6--MIPOL1 ENSEMBL mRNA 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--MIPOL1^ENST00000267368.11" ; Parent "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--MIPOL1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTC6--MIPOL1 HAVANA gene 55184 98633 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "TTC6--MIPOL1^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC6--MIPOL1 HAVANA mRNA 55184 98633 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "TTC6--MIPOL1^ENST00000327441.11" ; Parent "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "TTC6--MIPOL1^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTLL12--SLCO2B1 HAVANA gene 1001 14996 . + . FI_gene_label "TTLL12^ENSG00000100304.13" ; ID "TTLL12--SLCO2B1^TTLL12^ENSG00000100304.13" ; ccdsid "CCDS14047.1" ; exon_id "ENSE00001925503.2" ; exon_number 1 ; gene_id "TTLL12--SLCO2B1^TTLL12^ENSG00000100304.13" ; gene_name TTLL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150682.4" ; havana_transcript "OTTHUMT00000319611.2" ; hgnc_id "HGNC:28974" ; level 2 ; orig_coord_info "chr22,43186893,43187069,-" ; protein_id "ENSP00000216129.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTLL12--SLCO2B1^ENST00000216129.7" ; transcript_name "TTLL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTLL12--SLCO2B1 HAVANA mRNA 1001 14996 . + . FI_gene_label "TTLL12^ENSG00000100304.13" ; ID "TTLL12--SLCO2B1^ENST00000216129.7" ; Parent "TTLL12--SLCO2B1^TTLL12^ENSG00000100304.13" ; ccdsid "CCDS14047.1" ; exon_id "ENSE00001925503.2" ; exon_number 1 ; gene_id "TTLL12--SLCO2B1^TTLL12^ENSG00000100304.13" ; gene_name TTLL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150682.4" ; havana_transcript "OTTHUMT00000319611.2" ; hgnc_id "HGNC:28974" ; level 2 ; orig_coord_info "chr22,43186893,43187069,-" ; protein_id "ENSP00000216129.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTLL12--SLCO2B1^ENST00000216129.7" ; transcript_name "TTLL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTLL12--SLCO2B1 HAVANA gene 19336 41416 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "TTLL12--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "TTLL12--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TTLL12--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTLL12--SLCO2B1 HAVANA mRNA 19336 41416 . + . FI_gene_label "SLCO2B1^ENSG00000137491.15" ; ID "TTLL12--SLCO2B1^ENST00000289575.10" ; Parent "TTLL12--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; ccdsid "CCDS8235.1" ; exon_id "ENSE00002177754.2" ; exon_number 1 ; gene_id "TTLL12--SLCO2B1^SLCO2B1^ENSG00000137491.15" ; gene_name SLCO2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165420.5" ; havana_transcript "OTTHUMT00000383933.3" ; hgnc_id "HGNC:10962" ; level 2 ; orig_coord_info "chr11,75151382,75151397,+" ; protein_id "ENSP00000289575.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TTLL12--SLCO2B1^ENST00000289575.10" ; transcript_name "SLCO2B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
BMP7--LINC01734 HAVANA gene 20500 24029 . + . FI_gene_label "LINC01734^ENSG00000230324.1" ; ID "BMP7--LINC01734^LINC01734^ENSG00000230324.1" ; exon_id "ENSE00001687161.1" ; exon_number 1 ; gene_id "BMP7--LINC01734^LINC01734^ENSG00000230324.1" ; gene_name LINC01734 ; gene_type lncRNA ; havana_gene "OTTHUMG00000032466.2" ; havana_transcript "OTTHUMT00000079223.2" ; hgnc_id "HGNC:52522" ; level 2 ; orig_coord_info "chr20,39224555,39224748,-" ; tag basic ; transcript_id "BMP7--LINC01734^ENST00000412672.1" ; transcript_name "LINC01734-201" ; transcript_support_level 1 ; transcript_type lncRNA
BMP7--LINC01734 HAVANA RNA 20500 24029 . + . FI_gene_label "LINC01734^ENSG00000230324.1" ; ID "BMP7--LINC01734^ENST00000412672.1" ; Parent "BMP7--LINC01734^LINC01734^ENSG00000230324.1" ; exon_id "ENSE00001687161.1" ; exon_number 1 ; gene_id "BMP7--LINC01734^LINC01734^ENSG00000230324.1" ; gene_name LINC01734 ; gene_type lncRNA ; havana_gene "OTTHUMG00000032466.2" ; havana_transcript "OTTHUMT00000079223.2" ; hgnc_id "HGNC:52522" ; level 2 ; orig_coord_info "chr20,39224555,39224748,-" ; tag basic ; transcript_id "BMP7--LINC01734^ENST00000412672.1" ; transcript_name "LINC01734-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1 HAVANA RNA 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^ENST00000624936.2" ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
FER1L4--PIGU HAVANA gene 3237 7864 . + . FI_gene_label "FER1L4^ENSG00000088340.17" ; ID "FER1L4--PIGU^FER1L4^ENSG00000088340.17" ; exon_id "ENSE00001542980.1" ; exon_number 1 ; gene_id "FER1L4--PIGU^FER1L4^ENSG00000088340.17" ; gene_name FER1L4 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000032354.13" ; havana_transcript "OTTHUMT00000078892.1" ; hgnc_id "HGNC:15801" ; level 2 ; orig_coord_info "chr20,35605102,35605326,-" ; transcript_id "FER1L4--PIGU^ENST00000325076.9" ; transcript_name "FER1L4-201" ; transcript_support_level 2 ; transcript_type retained_intron
FER1L4--PIGU HAVANA RNA 3237 7864 . + . FI_gene_label "FER1L4^ENSG00000088340.17" ; ID "FER1L4--PIGU^ENST00000325076.9" ; Parent "FER1L4--PIGU^FER1L4^ENSG00000088340.17" ; exon_id "ENSE00001542980.1" ; exon_number 1 ; gene_id "FER1L4--PIGU^FER1L4^ENSG00000088340.17" ; gene_name FER1L4 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000032354.13" ; havana_transcript "OTTHUMT00000078892.1" ; hgnc_id "HGNC:15801" ; level 2 ; orig_coord_info "chr20,35605102,35605326,-" ; transcript_id "FER1L4--PIGU^ENST00000325076.9" ; transcript_name "FER1L4-201" ; transcript_support_level 2 ; transcript_type retained_intron
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PLEKHM1P1--KCNQ2 HAVANA gene 1030 7034 . + . FI_gene_label "PLEKHM1P1^ENSG00000214176.9" ; ID "PLEKHM1P1--KCNQ2^PLEKHM1P1^ENSG00000214176.9" ; exon_id "ENSE00002208800.1" ; exon_number 1 ; gene_id "PLEKHM1P1--KCNQ2^PLEKHM1P1^ENSG00000214176.9" ; gene_name PLEKHM1P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179296.2" ; havana_transcript "OTTHUMT00000445601.1" ; hgnc_id "HGNC:35411" ; level 2 ; orig_coord_info "chr17,64837056,64837125,-" ; transcript_id "PLEKHM1P1--KCNQ2^ENST00000397718.8" ; transcript_name "PLEKHM1P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
PLEKHM1P1--KCNQ2 HAVANA RNA 1030 7034 . + . FI_gene_label "PLEKHM1P1^ENSG00000214176.9" ; ID "PLEKHM1P1--KCNQ2^ENST00000397718.8" ; Parent "PLEKHM1P1--KCNQ2^PLEKHM1P1^ENSG00000214176.9" ; exon_id "ENSE00002208800.1" ; exon_number 1 ; gene_id "PLEKHM1P1--KCNQ2^PLEKHM1P1^ENSG00000214176.9" ; gene_name PLEKHM1P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179296.2" ; havana_transcript "OTTHUMT00000445601.1" ; hgnc_id "HGNC:35411" ; level 2 ; orig_coord_info "chr17,64837056,64837125,-" ; transcript_id "PLEKHM1P1--KCNQ2^ENST00000397718.8" ; transcript_name "PLEKHM1P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
RPN2--NORAD HAVANA gene 24710 30110 . + . FI_gene_label "NORAD^ENSG00000260032.2" ; ID "RPN2--NORAD^NORAD^ENSG00000260032.2" ; exon_id "ENSE00002583754.2" ; exon_number 1 ; gene_id "RPN2--NORAD^NORAD^ENSG00000260032.2" ; gene_name NORAD ; gene_type lncRNA ; havana_gene "OTTHUMG00000175580.2" ; havana_transcript "OTTHUMT00000430538.2" ; hgnc_id "HGNC:44311" ; level 2 ; orig_coord_info "chr20,36045618,36051018,-" ; tag basic ; transcript_id "RPN2--NORAD^ENST00000565493.2" ; transcript_name "NORAD-201" ; transcript_support_level NA ; transcript_type lncRNA
RPN2--NORAD HAVANA RNA 24710 30110 . + . FI_gene_label "NORAD^ENSG00000260032.2" ; ID "RPN2--NORAD^ENST00000565493.2" ; Parent "RPN2--NORAD^NORAD^ENSG00000260032.2" ; exon_id "ENSE00002583754.2" ; exon_number 1 ; gene_id "RPN2--NORAD^NORAD^ENSG00000260032.2" ; gene_name NORAD ; gene_type lncRNA ; havana_gene "OTTHUMG00000175580.2" ; havana_transcript "OTTHUMT00000430538.2" ; hgnc_id "HGNC:44311" ; level 2 ; orig_coord_info "chr20,36045618,36051018,-" ; tag basic ; transcript_id "RPN2--NORAD^ENST00000565493.2" ; transcript_name "NORAD-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
RPS6KB1--AL118523.1 HAVANA gene 30637 32488 . + . FI_gene_label "AL118523.1^ENSG00000229976.2" ; ID "RPS6KB1--AL118523.1^AL118523.1^ENSG00000229976.2" ; exon_id "ENSE00001595716.1" ; exon_number 1 ; gene_id "RPS6KB1--AL118523.1^AL118523.1^ENSG00000229976.2" ; gene_name "AL118523.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032468.3" ; havana_transcript "OTTHUMT00000079225.1" ; level 1 ; orig_coord_info "chr20,39785721,39785931,+" ; tag exp_conf ; transcript_id "RPS6KB1--AL118523.1^ENST00000444436.1" ; transcript_name "AL118523.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
RPS6KB1--AL118523.1 HAVANA RNA 30637 32488 . + . FI_gene_label "AL118523.1^ENSG00000229976.2" ; ID "RPS6KB1--AL118523.1^ENST00000444436.1" ; Parent "RPS6KB1--AL118523.1^AL118523.1^ENSG00000229976.2" ; exon_id "ENSE00001595716.1" ; exon_number 1 ; gene_id "RPS6KB1--AL118523.1^AL118523.1^ENSG00000229976.2" ; gene_name "AL118523.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032468.3" ; havana_transcript "OTTHUMT00000079225.1" ; level 1 ; orig_coord_info "chr20,39785721,39785931,+" ; tag exp_conf ; transcript_id "RPS6KB1--AL118523.1^ENST00000444436.1" ; transcript_name "AL118523.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RPS6KB1--AL162291.1 ENSEMBL gene 24997 25047 . + . FI_gene_label "AL162291.1^ENSG00000263453.1" ; ID "RPS6KB1--AL162291.1^AL162291.1^ENSG00000263453.1" ; exon_id "ENSE00002720855.1" ; exon_number 1 ; gene_id "RPS6KB1--AL162291.1^AL162291.1^ENSG00000263453.1" ; gene_name "AL162291.1" ; gene_type miRNA ; level 3 ; orig_coord_info "chr20,57895394,57895444,+" ; tag basic ; transcript_id "RPS6KB1--AL162291.1^ENST00000582082.1" ; transcript_name "AL162291.1-201" ; transcript_support_level NA ; transcript_type miRNA
RPS6KB1--AL162291.1 ENSEMBL RNA 24997 25047 . + . FI_gene_label "AL162291.1^ENSG00000263453.1" ; ID "RPS6KB1--AL162291.1^ENST00000582082.1" ; Parent "RPS6KB1--AL162291.1^AL162291.1^ENSG00000263453.1" ; exon_id "ENSE00002720855.1" ; exon_number 1 ; gene_id "RPS6KB1--AL162291.1^AL162291.1^ENSG00000263453.1" ; gene_name "AL162291.1" ; gene_type miRNA ; level 3 ; orig_coord_info "chr20,57895394,57895444,+" ; tag basic ; transcript_id "RPS6KB1--AL162291.1^ENST00000582082.1" ; transcript_name "AL162291.1-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
RPS6KB1--HSPE1P1 HAVANA gene 24997 25314 . + . FI_gene_label "HSPE1P1^ENSG00000234878.1" ; ID "RPS6KB1--HSPE1P1^HSPE1P1^ENSG00000234878.1" ; exon_id "ENSE00001767666.1" ; exon_number 1 ; gene_id "RPS6KB1--HSPE1P1^HSPE1P1^ENSG00000234878.1" ; gene_name HSPE1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032471.1" ; havana_transcript "OTTHUMT00000079229.1" ; hgnc_id "HGNC:16530" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,39932922,39933239,-" ; tag pseudo_consens basic ; transcript_id "RPS6KB1--HSPE1P1^ENST00000421494.1" ; transcript_name "HSPE1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RPS6KB1--HSPE1P1 HAVANA RNA 24997 25314 . + . FI_gene_label "HSPE1P1^ENSG00000234878.1" ; ID "RPS6KB1--HSPE1P1^ENST00000421494.1" ; Parent "RPS6KB1--HSPE1P1^HSPE1P1^ENSG00000234878.1" ; exon_id "ENSE00001767666.1" ; exon_number 1 ; gene_id "RPS6KB1--HSPE1P1^HSPE1P1^ENSG00000234878.1" ; gene_name HSPE1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032471.1" ; havana_transcript "OTTHUMT00000079229.1" ; hgnc_id "HGNC:16530" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,39932922,39933239,-" ; tag pseudo_consens basic ; transcript_id "RPS6KB1--HSPE1P1^ENST00000421494.1" ; transcript_name "HSPE1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
RPS6KB1--NKILA HAVANA gene 25024 26207 . + . FI_gene_label "NKILA^ENSG00000278709.2" ; ID "RPS6KB1--NKILA^NKILA^ENSG00000278709.2" ; exon_id "ENSE00003742452.1" ; exon_number 1 ; gene_id "RPS6KB1--NKILA^NKILA^ENSG00000278709.2" ; gene_name NKILA ; gene_type lncRNA ; havana_gene "OTTHUMG00000186958.2" ; havana_transcript "OTTHUMT00000474100.1" ; hgnc_id "HGNC:51599" ; level 2 ; orig_coord_info "chr20,57710183,57710614,+" ; tag basic ; transcript_id "RPS6KB1--NKILA^ENST00000613231.1" ; transcript_name "NKILA-201" ; transcript_support_level 4 ; transcript_type lncRNA
RPS6KB1--NKILA HAVANA RNA 25024 26207 . + . FI_gene_label "NKILA^ENSG00000278709.2" ; ID "RPS6KB1--NKILA^ENST00000613231.1" ; Parent "RPS6KB1--NKILA^NKILA^ENSG00000278709.2" ; exon_id "ENSE00003742452.1" ; exon_number 1 ; gene_id "RPS6KB1--NKILA^NKILA^ENSG00000278709.2" ; gene_name NKILA ; gene_type lncRNA ; havana_gene "OTTHUMG00000186958.2" ; havana_transcript "OTTHUMT00000474100.1" ; hgnc_id "HGNC:51599" ; level 2 ; orig_coord_info "chr20,57710183,57710614,+" ; tag basic ; transcript_id "RPS6KB1--NKILA^ENST00000613231.1" ; transcript_name "NKILA-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
643 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1242 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 54 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed