File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/4b56e794bfdf1906af268273656ab5/.command.log
Size
6.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-56cab8-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/f3bd7d0ddbef2d0c0c908e3509699c/aih-tih-sc-56cab8-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/f81545494fa83f1d2efe48146f17ee/aih-tih-sc-56cab8-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/4b56e794bfdf1906af268273656ab5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/4b56e794bfdf1906af268273656ab5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
CTCF--TANGO6
starfusion
arriba
GPHN--MPP5
starfusion
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
AGO2--TRAPPC9
starfusion
PKD1--NPIPB12
starfusion
FAM219A--AL139008.2
starfusion
arriba
AC011603.2--ABR
starfusion
NOTCH1--DIPK1B
arriba
TVP23C--CDRT4
arriba
RBM14--RBM4
arriba
PROM1--AC108063.2
arriba
PROM1--TAPT1
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
CRYZL2P--SEC16B
arriba
AC092666.1--ACTR3B
arriba
AC006008.1--ACTR3B
arriba

  0%|          | 0/30 [00:00<?, ?it/s]
Processing CTCF--TANGO6:   0%|          | 0/30 [00:00<?, ?it/s]
Processing CTCF--TANGO6:   3%|▎         | 1/30 [00:00<00:03,  9.23it/s]
Processing GPHN--MPP5:   3%|▎         | 1/30 [00:00<00:03,  9.23it/s]  
Processing GPHN--MPP5:   7%|▋         | 2/30 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 2/30 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 3/30 [00:00<00:02,  9.54it/s]
Processing STX16--NPEPL1:  10%|█         | 3/30 [00:00<00:02,  9.54it/s]     
Processing STX16--NPEPL1:  13%|█▎        | 4/30 [00:00<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 4/30 [00:00<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  17%|█▋        | 5/30 [00:00<00:02,  9.60it/s]
Processing AGO2--TRAPPC9:  17%|█▋        | 5/30 [00:00<00:02,  9.60it/s]   
Processing AGO2--TRAPPC9:  20%|██        | 6/30 [00:00<00:02,  9.61it/s]
Processing PKD1--NPIPB12:  20%|██        | 6/30 [00:00<00:02,  9.61it/s]
Processing PKD1--NPIPB12:  23%|██▎       | 7/30 [00:00<00:02,  9.62it/s]
Processing FAM219A--AL139008.2:  23%|██▎       | 7/30 [00:00<00:02,  9.62it/s]
Processing FAM219A--AL139008.2:  27%|██▋       | 8/30 [00:00<00:02,  9.62it/s]
Processing AC011603.2--ABR:  27%|██▋       | 8/30 [00:00<00:02,  9.62it/s]    
Processing AC011603.2--ABR:  30%|███       | 9/30 [00:00<00:02,  9.63it/s]
Processing NOTCH1--DIPK1B:  30%|███       | 9/30 [00:00<00:02,  9.63it/s] 
Processing NOTCH1--DIPK1B:  33%|███▎      | 10/30 [00:01<00:02,  9.63it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 10/30 [00:01<00:02,  9.63it/s] 
Processing TVP23C--CDRT4:  37%|███▋      | 11/30 [00:01<00:01,  9.63it/s]
Processing RBM14--RBM4:  37%|███▋      | 11/30 [00:01<00:01,  9.63it/s]  
Processing RBM14--RBM4:  40%|████      | 12/30 [00:01<00:01,  9.63it/s]
Processing PROM1--AC108063.2:  40%|████      | 12/30 [00:01<00:01,  9.63it/s]
Processing PROM1--AC108063.2:  43%|████▎     | 13/30 [00:01<00:01,  9.63it/s]
Processing PROM1--TAPT1:  43%|████▎     | 13/30 [00:01<00:01,  9.63it/s]     
Processing PROM1--TAPT1:  47%|████▋     | 14/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  47%|████▋     | 14/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  50%|█████     | 15/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 15/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  53%|█████▎    | 16/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  53%|█████▎    | 16/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  57%|█████▋    | 17/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  57%|█████▋    | 17/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  60%|██████    | 18/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  60%|██████    | 18/30 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  63%|██████▎   | 19/30 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  63%|██████▎   | 19/30 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  67%|██████▋   | 20/30 [00:02<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  67%|██████▋   | 20/30 [00:02<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB7:  70%|███████   | 21/30 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  70%|███████   | 21/30 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  73%|███████▎  | 22/30 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  73%|███████▎  | 22/30 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  77%|███████▋  | 23/30 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  77%|███████▋  | 23/30 [00:02<00:00,  9.63it/s] 
Processing PCDHGB2--PCDHGA9:  80%|████████  | 24/30 [00:02<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC1:  80%|████████  | 24/30 [00:02<00:00,  9.63it/s] 
Processing PCDHA4--PCDHAC1:  83%|████████▎ | 25/30 [00:02<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  83%|████████▎ | 25/30 [00:02<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  87%|████████▋ | 26/30 [00:02<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  87%|████████▋ | 26/30 [00:02<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  90%|█████████ | 27/30 [00:02<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B:  90%|█████████ | 27/30 [00:02<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B:  93%|█████████▎| 28/30 [00:02<00:00,  9.63it/s]
Processing AC092666.1--ACTR3B:  93%|█████████▎| 28/30 [00:02<00:00,  9.63it/s]
Processing AC092666.1--ACTR3B:  97%|█████████▋| 29/30 [00:03<00:00,  9.62it/s]
Processing AC006008.1--ACTR3B:  97%|█████████▋| 29/30 [00:03<00:00,  9.62it/s]
Processing AC006008.1--ACTR3B: 100%|██████████| 30/30 [00:03<00:00,  9.62it/s]
Processing AC006008.1--ACTR3B: 100%|██████████| 30/30 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory