File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/41d14cc11919a9803ad69844924f82/.command.log
Size
11.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-790e56-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/41d14cc11919a9803ad69844924f82/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/41d14cc11919a9803ad69844924f82/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/2fff9f3d1a6d942fef1d4ea94a873a/aih-tih-sc-790e56-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/3ba3da1313b107af03d4d856e5cd02/aih-tih-sc-790e56-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AC025884.2--IGH-@-ext
starfusion
CCDC117--HSCB
starfusion
arriba
FLAD1--CKS1BP3
starfusion
UTRN--AXIN1
starfusion
arriba
DAP3--ZBTB7B
starfusion
arriba
UBE2Z--ATP2B2
starfusion
arriba
TCP11L1--DEPDC7
starfusion
arriba
FAM222A--ACACB
starfusion
arriba
DNAJC3--CLDN10
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
HIPK1--MOV10
starfusion
arriba
TLK2--AC240565.1
starfusion
GPHN--CSRP3-AS1
starfusion
arriba
IMMP2L--DOCK4
starfusion
arriba
PAQR5--ALDH1A2
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
F3--F3
arriba
F3--AC093117.1
arriba
VTCN1--VTCN1
arriba
Metazoa_SRP--VTCN1
arriba
AC015911.9--SLFN12L
arriba
MIER1--DNAI4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
ASH1L--ASH1L
arriba
CMC2--CMC2
arriba
TVP23C--CDRT4
arriba
TNFAIP2--TNFAIP2
arriba
STAG2--STAG2
arriba
MTR--MTR
arriba
CARM1--CARM1
arriba
IARS1--NOL8
arriba
KLRC4--KLRK1
arriba
RABGAP1L--RPL30P1
arriba
RABGAP1L--RABGAP1L-DT
arriba
CDIN1--AC087516.2
arriba
CDIN1--COX6CP4
arriba
FLAD1--CKS1B
arriba
NELFB--FAM166A
arriba
NELFB--STPG3-AS1
arriba
AC092807.3--DDAH1
arriba
CADM1--AC073321.1
arriba
CADM1--IGFBP2
arriba
PCDHA5--PCDHAC1
arriba
PCDHA5--PCDHAC2
arriba
PCDHA5--PCDHA13
arriba

  0%|          | 0/54 [00:00<?, ?it/s]
Processing AC025884.2--IGH-@-ext:   0%|          | 0/54 [00:00<?, ?it/s]
Processing AC025884.2--IGH-@-ext:   2%|▏         | 1/54 [00:00<00:05,  9.16it/s]
Processing CCDC117--HSCB:   2%|▏         | 1/54 [00:00<00:05,  9.16it/s]        
Processing CCDC117--HSCB:   4%|▎         | 2/54 [00:00<00:05,  9.38it/s]
Processing FLAD1--CKS1BP3:   4%|▎         | 2/54 [00:00<00:05,  9.38it/s]
Processing FLAD1--CKS1BP3:   6%|▌         | 3/54 [00:00<00:05,  9.44it/s]
Processing UTRN--AXIN1:   6%|▌         | 3/54 [00:00<00:05,  9.44it/s]   
Processing UTRN--AXIN1:   7%|▋         | 4/54 [00:00<00:05,  9.39it/s]
Processing DAP3--ZBTB7B:   7%|▋         | 4/54 [00:00<00:05,  9.39it/s]
Processing DAP3--ZBTB7B:   9%|▉         | 5/54 [00:00<00:05,  9.43it/s]
Processing UBE2Z--ATP2B2:   9%|▉         | 5/54 [00:00<00:05,  9.43it/s]
Processing UBE2Z--ATP2B2:  11%|█         | 6/54 [00:00<00:05,  9.39it/s]
Processing TCP11L1--DEPDC7:  11%|█         | 6/54 [00:00<00:05,  9.39it/s]
Processing TCP11L1--DEPDC7:  13%|█▎        | 7/54 [00:00<00:04,  9.42it/s]
Processing FAM222A--ACACB:  13%|█▎        | 7/54 [00:00<00:04,  9.42it/s] 
Processing FAM222A--ACACB:  15%|█▍        | 8/54 [00:00<00:04,  9.44it/s]
Processing DNAJC3--CLDN10:  15%|█▍        | 8/54 [00:00<00:04,  9.44it/s]
Processing DNAJC3--CLDN10:  17%|█▋        | 9/54 [00:00<00:04,  9.39it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 9/54 [00:00<00:04,  9.39it/s]
Processing TLK2P1--AC110079.1:  19%|█▊        | 10/54 [00:01<00:04,  9.36it/s]
Processing HIPK1--MOV10:  19%|█▊        | 10/54 [00:01<00:04,  9.36it/s]      
Processing HIPK1--MOV10:  20%|██        | 11/54 [00:01<00:04,  9.39it/s]
Processing TLK2--AC240565.1:  20%|██        | 11/54 [00:01<00:04,  9.39it/s]
Processing TLK2--AC240565.1:  22%|██▏       | 12/54 [00:01<00:04,  9.42it/s]
Processing GPHN--CSRP3-AS1:  22%|██▏       | 12/54 [00:01<00:04,  9.42it/s] 
Processing GPHN--CSRP3-AS1:  24%|██▍       | 13/54 [00:01<00:04,  9.36it/s]
Processing IMMP2L--DOCK4:  24%|██▍       | 13/54 [00:01<00:04,  9.36it/s]  
Processing IMMP2L--DOCK4:  26%|██▌       | 14/54 [00:01<00:04,  9.34it/s]
Processing PAQR5--ALDH1A2:  26%|██▌       | 14/54 [00:01<00:04,  9.34it/s]
Processing PAQR5--ALDH1A2:  28%|██▊       | 15/54 [00:01<00:04,  9.33it/s]
Processing STX16--NPEPL1:  28%|██▊       | 15/54 [00:01<00:04,  9.33it/s] 
Processing STX16--NPEPL1:  30%|██▉       | 16/54 [00:01<00:04,  9.39it/s]
Processing F3--F3:  30%|██▉       | 16/54 [00:01<00:04,  9.39it/s]       
Processing F3--F3:  31%|███▏      | 17/54 [00:01<00:03,  9.37it/s]
Processing F3--AC093117.1:  31%|███▏      | 17/54 [00:01<00:03,  9.37it/s]
Processing F3--AC093117.1:  33%|███▎      | 18/54 [00:01<00:03,  9.41it/s]
Processing VTCN1--VTCN1:  33%|███▎      | 18/54 [00:01<00:03,  9.41it/s]  
Processing VTCN1--VTCN1:  35%|███▌      | 19/54 [00:02<00:03,  9.44it/s]
Processing Metazoa_SRP--VTCN1:  35%|███▌      | 19/54 [00:02<00:03,  9.44it/s]
Processing Metazoa_SRP--VTCN1:  37%|███▋      | 20/54 [00:02<00:03,  9.45it/s]
Processing AC015911.9--SLFN12L:  37%|███▋      | 20/54 [00:02<00:03,  9.45it/s]
Processing AC015911.9--SLFN12L:  39%|███▉      | 21/54 [00:02<00:03,  9.47it/s]
Processing MIER1--DNAI4:  39%|███▉      | 21/54 [00:02<00:03,  9.47it/s]       
Processing MIER1--DNAI4:  41%|████      | 22/54 [00:02<00:03,  9.48it/s]
Processing PCDHGB2--PCDHGA8:  41%|████      | 22/54 [00:02<00:03,  9.48it/s]
Processing PCDHGB2--PCDHGA8:  43%|████▎     | 23/54 [00:02<00:03,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  43%|████▎     | 23/54 [00:02<00:03,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  44%|████▍     | 24/54 [00:02<00:03,  9.49it/s]
Processing PCDHGB2--PCDHGC3:  44%|████▍     | 24/54 [00:02<00:03,  9.49it/s]
Processing PCDHGB2--PCDHGC3:  46%|████▋     | 25/54 [00:02<00:03,  9.50it/s]
Processing PCDHGB2--PCDHGA10:  46%|████▋     | 25/54 [00:02<00:03,  9.50it/s]
Processing PCDHGB2--PCDHGA10:  48%|████▊     | 26/54 [00:02<00:02,  9.50it/s]
Processing PCDHGB2--PCDHGC5:  48%|████▊     | 26/54 [00:02<00:02,  9.50it/s] 
Processing PCDHGB2--PCDHGC5:  50%|█████     | 27/54 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGB6:  50%|█████     | 27/54 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGB6:  52%|█████▏    | 28/54 [00:02<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 28/54 [00:02<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGA11:  54%|█████▎    | 29/54 [00:03<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGA12:  54%|█████▎    | 29/54 [00:03<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGA12:  56%|█████▌    | 30/54 [00:03<00:02,  9.49it/s]
Processing PCDHGB2--PCDHGB7:  56%|█████▌    | 30/54 [00:03<00:02,  9.49it/s] 
Processing PCDHGB2--PCDHGB7:  57%|█████▋    | 31/54 [00:03<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  57%|█████▋    | 31/54 [00:03<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  59%|█████▉    | 32/54 [00:03<00:02,  9.46it/s]
Processing ASH1L--ASH1L:  59%|█████▉    | 32/54 [00:03<00:02,  9.46it/s]    
Processing ASH1L--ASH1L:  61%|██████    | 33/54 [00:03<00:02,  9.42it/s]
Processing CMC2--CMC2:  61%|██████    | 33/54 [00:03<00:02,  9.42it/s]  
Processing CMC2--CMC2:  63%|██████▎   | 34/54 [00:03<00:02,  9.43it/s]
Processing TVP23C--CDRT4:  63%|██████▎   | 34/54 [00:03<00:02,  9.43it/s]
Processing TVP23C--CDRT4:  65%|██████▍   | 35/54 [00:03<00:02,  9.45it/s]
Processing TNFAIP2--TNFAIP2:  65%|██████▍   | 35/54 [00:03<00:02,  9.45it/s]
Processing TNFAIP2--TNFAIP2:  67%|██████▋   | 36/54 [00:03<00:01,  9.46it/s]
Processing STAG2--STAG2:  67%|██████▋   | 36/54 [00:03<00:01,  9.46it/s]    
Processing STAG2--STAG2:  69%|██████▊   | 37/54 [00:03<00:01,  9.46it/s]
Processing MTR--MTR:  69%|██████▊   | 37/54 [00:03<00:01,  9.46it/s]    
Processing MTR--MTR:  70%|███████   | 38/54 [00:04<00:01,  9.46it/s]
Processing CARM1--CARM1:  70%|███████   | 38/54 [00:04<00:01,  9.46it/s]
Processing CARM1--CARM1:  72%|███████▏  | 39/54 [00:04<00:01,  9.40it/s]
Processing IARS1--NOL8:  72%|███████▏  | 39/54 [00:04<00:01,  9.40it/s] 
Processing IARS1--NOL8:  74%|███████▍  | 40/54 [00:04<00:01,  9.42it/s]
Processing KLRC4--KLRK1:  74%|███████▍  | 40/54 [00:04<00:01,  9.42it/s]
Processing KLRC4--KLRK1:  76%|███████▌  | 41/54 [00:04<00:01,  9.37it/s]
Processing RABGAP1L--RPL30P1:  76%|███████▌  | 41/54 [00:04<00:01,  9.37it/s]
Processing RABGAP1L--RPL30P1:  78%|███████▊  | 42/54 [00:04<00:01,  9.40it/s]
Processing RABGAP1L--RABGAP1L-DT:  78%|███████▊  | 42/54 [00:04<00:01,  9.40it/s]
Processing RABGAP1L--RABGAP1L-DT:  80%|███████▉  | 43/54 [00:04<00:01,  9.42it/s]
Processing CDIN1--AC087516.2:  80%|███████▉  | 43/54 [00:04<00:01,  9.42it/s]    
Processing CDIN1--AC087516.2:  81%|████████▏ | 44/54 [00:04<00:01,  9.43it/s]
Processing CDIN1--COX6CP4:  81%|████████▏ | 44/54 [00:04<00:01,  9.43it/s]   
Processing CDIN1--COX6CP4:  83%|████████▎ | 45/54 [00:04<00:00,  9.43it/s]
Processing FLAD1--CKS1B:  83%|████████▎ | 45/54 [00:04<00:00,  9.43it/s]  
Processing FLAD1--CKS1B:  85%|████████▌ | 46/54 [00:04<00:00,  9.42it/s]
Processing NELFB--FAM166A:  85%|████████▌ | 46/54 [00:04<00:00,  9.42it/s]
Processing NELFB--FAM166A:  87%|████████▋ | 47/54 [00:04<00:00,  9.42it/s]
Processing NELFB--STPG3-AS1:  87%|████████▋ | 47/54 [00:04<00:00,  9.42it/s]
Processing NELFB--STPG3-AS1:  89%|████████▉ | 48/54 [00:05<00:00,  9.42it/s]
Processing AC092807.3--DDAH1:  89%|████████▉ | 48/54 [00:05<00:00,  9.42it/s]
Processing AC092807.3--DDAH1:  91%|█████████ | 49/54 [00:05<00:00,  9.45it/s]
Processing CADM1--AC073321.1:  91%|█████████ | 49/54 [00:05<00:00,  9.45it/s]
Processing CADM1--AC073321.1:  93%|█████████▎| 50/54 [00:05<00:00,  9.46it/s]
Processing CADM1--IGFBP2:  93%|█████████▎| 50/54 [00:05<00:00,  9.46it/s]    
Processing CADM1--IGFBP2:  94%|█████████▍| 51/54 [00:05<00:00,  9.47it/s]
Processing PCDHA5--PCDHAC1:  94%|█████████▍| 51/54 [00:05<00:00,  9.47it/s]
Processing PCDHA5--PCDHAC1:  96%|█████████▋| 52/54 [00:05<00:00,  9.47it/s]
Processing PCDHA5--PCDHAC2:  96%|█████████▋| 52/54 [00:05<00:00,  9.47it/s]
Processing PCDHA5--PCDHAC2:  98%|█████████▊| 53/54 [00:05<00:00,  9.43it/s]
Processing PCDHA5--PCDHA13:  98%|█████████▊| 53/54 [00:05<00:00,  9.43it/s]
Processing PCDHA5--PCDHA13: 100%|██████████| 54/54 [00:05<00:00,  9.45it/s]
Processing PCDHA5--PCDHA13: 100%|██████████| 54/54 [00:05<00:00,  9.43it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory