Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e61cf0c97abb8b5b1029066d738dcc/fi_workdir/aih-tih-sc-01c779-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/2a55bd0a194ea18a66f117d6bd4851/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/2a55bd0a194ea18a66f117d6bd4851/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12886
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12886
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12886
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABL2--CYCSP53 HAVANA gene 2445 23641 . + . FI_gene_label "ABL2^ENSG00000143322.21" ; ID "ABL2--CYCSP53^ABL2^ENSG00000143322.21" ; ccdsid "CCDS44282.1" ; exon_id "ENSE00001445184.1" ; exon_number 1 ; gene_id "ABL2--CYCSP53^ABL2^ENSG00000143322.21" ; gene_name ABL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035199.11" ; havana_transcript "OTTHUMT00000085175.3" ; hgnc_id "HGNC:77" ; level 2 ; orig_coord_info "chr1,179142933,179143044,-" ; protein_id "ENSP00000339209.3" ; tag basic CCDS ; transcript_id "ABL2--CYCSP53^ENST00000344730.7" ; transcript_name "ABL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABL2--CYCSP53 HAVANA mRNA 2445 23641 . + . FI_gene_label "ABL2^ENSG00000143322.21" ; ID "ABL2--CYCSP53^ENST00000344730.7" ; Parent "ABL2--CYCSP53^ABL2^ENSG00000143322.21" ; ccdsid "CCDS44282.1" ; exon_id "ENSE00001445184.1" ; exon_number 1 ; gene_id "ABL2--CYCSP53^ABL2^ENSG00000143322.21" ; gene_name ABL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035199.11" ; havana_transcript "OTTHUMT00000085175.3" ; hgnc_id "HGNC:77" ; level 2 ; orig_coord_info "chr1,179142933,179143044,-" ; protein_id "ENSP00000339209.3" ; tag basic CCDS ; transcript_id "ABL2--CYCSP53^ENST00000344730.7" ; transcript_name "ABL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABL2--PRRC2C HAVANA gene 31365 73817 . + . FI_gene_label "PRRC2C^ENSG00000117523.16" ; ID "ABL2--PRRC2C^PRRC2C^ENSG00000117523.16" ; ccdsid "CCDS1296.2" ; exon_id "ENSE00003664356.1" ; exon_number 2 ; gene_id "ABL2--PRRC2C^PRRC2C^ENSG00000117523.16" ; gene_name PRRC2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000034665.10" ; havana_transcript "OTTHUMT00000314826.4" ; hgnc_id "HGNC:24903" ; level 2 ; orig_coord_info "chr1,171512089,171512200,+" ; protein_id "ENSP00000343629.4" ; tag basic appris_principal_2 CCDS ; transcript_id "ABL2--PRRC2C^ENST00000338920.8" ; transcript_name "PRRC2C-201" ; transcript_support_level 5 ; transcript_type protein_coding
ABL2--PRRC2C HAVANA mRNA 31365 73817 . + . FI_gene_label "PRRC2C^ENSG00000117523.16" ; ID "ABL2--PRRC2C^ENST00000338920.8" ; Parent "ABL2--PRRC2C^PRRC2C^ENSG00000117523.16" ; ccdsid "CCDS1296.2" ; exon_id "ENSE00003664356.1" ; exon_number 2 ; gene_id "ABL2--PRRC2C^PRRC2C^ENSG00000117523.16" ; gene_name PRRC2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000034665.10" ; havana_transcript "OTTHUMT00000314826.4" ; hgnc_id "HGNC:24903" ; level 2 ; orig_coord_info "chr1,171512089,171512200,+" ; protein_id "ENSP00000343629.4" ; tag basic appris_principal_2 CCDS ; transcript_id "ABL2--PRRC2C^ENST00000338920.8" ; transcript_name "PRRC2C-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ABL2--PRRC2C HAVANA gene 2445 23641 . + . FI_gene_label "ABL2^ENSG00000143322.21" ; ID "ABL2--PRRC2C^ABL2^ENSG00000143322.21" ; ccdsid "CCDS44282.1" ; exon_id "ENSE00001445184.1" ; exon_number 1 ; gene_id "ABL2--PRRC2C^ABL2^ENSG00000143322.21" ; gene_name ABL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035199.11" ; havana_transcript "OTTHUMT00000085175.3" ; hgnc_id "HGNC:77" ; level 2 ; orig_coord_info "chr1,179142933,179143044,-" ; protein_id "ENSP00000339209.3" ; tag basic CCDS ; transcript_id "ABL2--PRRC2C^ENST00000344730.7" ; transcript_name "ABL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABL2--PRRC2C HAVANA mRNA 2445 23641 . + . FI_gene_label "ABL2^ENSG00000143322.21" ; ID "ABL2--PRRC2C^ENST00000344730.7" ; Parent "ABL2--PRRC2C^ABL2^ENSG00000143322.21" ; ccdsid "CCDS44282.1" ; exon_id "ENSE00001445184.1" ; exon_number 1 ; gene_id "ABL2--PRRC2C^ABL2^ENSG00000143322.21" ; gene_name ABL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035199.11" ; havana_transcript "OTTHUMT00000085175.3" ; hgnc_id "HGNC:77" ; level 2 ; orig_coord_info "chr1,179142933,179143044,-" ; protein_id "ENSP00000339209.3" ; tag basic CCDS ; transcript_id "ABL2--PRRC2C^ENST00000344730.7" ; transcript_name "ABL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAD--AC024405.1 HAVANA gene 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--AC024405.1^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--AC024405.1^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--AC024405.1^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAD--AC024405.1 HAVANA mRNA 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--AC024405.1^ENST00000309032.8" ; Parent "BAD--AC024405.1^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--AC024405.1^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--AC024405.1^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAD--OR4C50P HAVANA gene 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--OR4C50P^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--OR4C50P^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--OR4C50P^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAD--OR4C50P HAVANA mRNA 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--OR4C50P^ENST00000309032.8" ; Parent "BAD--OR4C50P^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--OR4C50P^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--OR4C50P^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--OSBPL5 HAVANA gene 30809 55448 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--OSBPL5 HAVANA mRNA 30809 55448 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CARS1--OSBPL5^ENST00000263650.12" ; Parent "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--OSBPL5 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--OSBPL5^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--OSBPL5 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--OSBPL5^ENST00000278224.13" ; Parent "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--OSBPL5^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP89--AKR1B1P7 HAVANA gene 1034 28482 . + . FI_gene_label "CEP89^ENSG00000121289.18" ; ID "CEP89--AKR1B1P7^CEP89^ENSG00000121289.18" ; ccdsid "CCDS32987.1" ; exon_id "ENSE00003843910.1" ; exon_number 1 ; gene_id "CEP89--AKR1B1P7^CEP89^ENSG00000121289.18" ; gene_name CEP89 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180424.7" ; havana_transcript "OTTHUMT00000451300.4" ; hgnc_id "HGNC:25907" ; level 2 ; orig_coord_info "chr19,32971836,32971874,-" ; protein_id "ENSP00000306105.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "CEP89--AKR1B1P7^ENST00000305768.10" ; transcript_name "CEP89-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP89--AKR1B1P7 HAVANA mRNA 1034 28482 . + . FI_gene_label "CEP89^ENSG00000121289.18" ; ID "CEP89--AKR1B1P7^ENST00000305768.10" ; Parent "CEP89--AKR1B1P7^CEP89^ENSG00000121289.18" ; ccdsid "CCDS32987.1" ; exon_id "ENSE00003843910.1" ; exon_number 1 ; gene_id "CEP89--AKR1B1P7^CEP89^ENSG00000121289.18" ; gene_name CEP89 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180424.7" ; havana_transcript "OTTHUMT00000451300.4" ; hgnc_id "HGNC:25907" ; level 2 ; orig_coord_info "chr19,32971836,32971874,-" ; protein_id "ENSP00000306105.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "CEP89--AKR1B1P7^ENST00000305768.10" ; transcript_name "CEP89-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP89--RPS3AP50 HAVANA gene 1034 28482 . + . FI_gene_label "CEP89^ENSG00000121289.18" ; ID "CEP89--RPS3AP50^CEP89^ENSG00000121289.18" ; ccdsid "CCDS32987.1" ; exon_id "ENSE00003843910.1" ; exon_number 1 ; gene_id "CEP89--RPS3AP50^CEP89^ENSG00000121289.18" ; gene_name CEP89 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180424.7" ; havana_transcript "OTTHUMT00000451300.4" ; hgnc_id "HGNC:25907" ; level 2 ; orig_coord_info "chr19,32971836,32971874,-" ; protein_id "ENSP00000306105.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "CEP89--RPS3AP50^ENST00000305768.10" ; transcript_name "CEP89-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP89--RPS3AP50 HAVANA mRNA 1034 28482 . + . FI_gene_label "CEP89^ENSG00000121289.18" ; ID "CEP89--RPS3AP50^ENST00000305768.10" ; Parent "CEP89--RPS3AP50^CEP89^ENSG00000121289.18" ; ccdsid "CCDS32987.1" ; exon_id "ENSE00003843910.1" ; exon_number 1 ; gene_id "CEP89--RPS3AP50^CEP89^ENSG00000121289.18" ; gene_name CEP89 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180424.7" ; havana_transcript "OTTHUMT00000451300.4" ; hgnc_id "HGNC:25907" ; level 2 ; orig_coord_info "chr19,32971836,32971874,-" ; protein_id "ENSP00000306105.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "CEP89--RPS3AP50^ENST00000305768.10" ; transcript_name "CEP89-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CIZ1--GOLGA2 HAVANA gene 8355 21548 . + . FI_gene_label "CIZ1^ENSG00000148337.21" ; ID "CIZ1--GOLGA2^CIZ1^ENSG00000148337.21" ; exon_id "ENSE00001459101.1" ; exon_number 1 ; gene_id "CIZ1--GOLGA2^CIZ1^ENSG00000148337.21" ; gene_name CIZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020735.7" ; havana_transcript "OTTHUMT00000054401.1" ; hgnc_id "HGNC:16744" ; level 2 ; orig_coord_info "chr9,128190688,128190857,-" ; protein_id "ENSP00000277465.4" ; tag basic appris_alternative_2 ; transcript_id "CIZ1--GOLGA2^ENST00000277465.8" ; transcript_name "CIZ1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CIZ1--GOLGA2 HAVANA mRNA 8355 21548 . + . FI_gene_label "CIZ1^ENSG00000148337.21" ; ID "CIZ1--GOLGA2^ENST00000277465.8" ; Parent "CIZ1--GOLGA2^CIZ1^ENSG00000148337.21" ; exon_id "ENSE00001459101.1" ; exon_number 1 ; gene_id "CIZ1--GOLGA2^CIZ1^ENSG00000148337.21" ; gene_name CIZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020735.7" ; havana_transcript "OTTHUMT00000054401.1" ; hgnc_id "HGNC:16744" ; level 2 ; orig_coord_info "chr9,128190688,128190857,-" ; protein_id "ENSP00000277465.4" ; tag basic appris_alternative_2 ; transcript_id "CIZ1--GOLGA2^ENST00000277465.8" ; transcript_name "CIZ1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CIZ1--GOLGA2 HAVANA gene 27259 41747 . + . FI_gene_label "GOLGA2^ENSG00000167110.18" ; ID "CIZ1--GOLGA2^GOLGA2^ENSG00000167110.18" ; exon_id "ENSE00001419847.1" ; exon_number 1 ; gene_id "CIZ1--GOLGA2^GOLGA2^ENSG00000167110.18" ; gene_name GOLGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020732.11" ; havana_transcript "OTTHUMT00000054358.3" ; hgnc_id "HGNC:4425" ; level 2 ; orig_coord_info "chr9,128275893,128275940,-" ; protein_id "ENSP00000416097.3" ; tag upstream_ATG basic appris_alternative_2 ; transcript_id "CIZ1--GOLGA2^ENST00000421699.7" ; transcript_name "GOLGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CIZ1--GOLGA2 HAVANA mRNA 27259 41747 . + . FI_gene_label "GOLGA2^ENSG00000167110.18" ; ID "CIZ1--GOLGA2^ENST00000421699.7" ; Parent "CIZ1--GOLGA2^GOLGA2^ENSG00000167110.18" ; exon_id "ENSE00001419847.1" ; exon_number 1 ; gene_id "CIZ1--GOLGA2^GOLGA2^ENSG00000167110.18" ; gene_name GOLGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020732.11" ; havana_transcript "OTTHUMT00000054358.3" ; hgnc_id "HGNC:4425" ; level 2 ; orig_coord_info "chr9,128275893,128275940,-" ; protein_id "ENSP00000416097.3" ; tag upstream_ATG basic appris_alternative_2 ; transcript_id "CIZ1--GOLGA2^ENST00000421699.7" ; transcript_name "GOLGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COG8--LSM12 HAVANA gene 20247 26993 . + . FI_gene_label "LSM12^ENSG00000161654.10" ; ID "COG8--LSM12^LSM12^ENSG00000161654.10" ; ccdsid "CCDS11475.1" ; exon_id "ENSE00001059496.6" ; exon_number 1 ; gene_id "COG8--LSM12^LSM12^ENSG00000161654.10" ; gene_name LSM12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181804.2" ; havana_transcript "OTTHUMT00000530330.1" ; hgnc_id "HGNC:26407" ; level 2 ; orig_coord_info "chr17,44066464,44066587,-" ; protein_id "ENSP00000293406.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COG8--LSM12^ENST00000293406.8" ; transcript_name "LSM12-201" ; transcript_support_level 1 ; transcript_type protein_coding
COG8--LSM12 HAVANA mRNA 20247 26993 . + . FI_gene_label "LSM12^ENSG00000161654.10" ; ID "COG8--LSM12^ENST00000293406.8" ; Parent "COG8--LSM12^LSM12^ENSG00000161654.10" ; ccdsid "CCDS11475.1" ; exon_id "ENSE00001059496.6" ; exon_number 1 ; gene_id "COG8--LSM12^LSM12^ENSG00000161654.10" ; gene_name LSM12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181804.2" ; havana_transcript "OTTHUMT00000530330.1" ; hgnc_id "HGNC:26407" ; level 2 ; orig_coord_info "chr17,44066464,44066587,-" ; protein_id "ENSP00000293406.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COG8--LSM12^ENST00000293406.8" ; transcript_name "LSM12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COG8--LSM12 HAVANA gene 1020 11734 . + . FI_gene_label "COG8^ENSG00000213380.16" ; ID "COG8--LSM12^COG8^ENSG00000213380.16" ; ccdsid "CCDS10876.1" ; exon_id "ENSE00003839008.2" ; exon_number 1 ; gene_id "COG8--LSM12^COG8^ENSG00000213380.16" ; gene_name COG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154277.7" ; havana_transcript "OTTHUMT00000489197.2" ; hgnc_id "HGNC:18623" ; level 2 ; orig_coord_info "chr16,69339176,69339552,-" ; protein_id "ENSP00000305459.6" ; tag CAGE_supported_TSS upstream_ATG basic MANE_Select appris_alternative_2 CCDS ; transcript_id "COG8--LSM12^ENST00000306875.10" ; transcript_name "COG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
COG8--LSM12 HAVANA mRNA 1020 11734 . + . FI_gene_label "COG8^ENSG00000213380.16" ; ID "COG8--LSM12^ENST00000306875.10" ; Parent "COG8--LSM12^COG8^ENSG00000213380.16" ; ccdsid "CCDS10876.1" ; exon_id "ENSE00003839008.2" ; exon_number 1 ; gene_id "COG8--LSM12^COG8^ENSG00000213380.16" ; gene_name COG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154277.7" ; havana_transcript "OTTHUMT00000489197.2" ; hgnc_id "HGNC:18623" ; level 2 ; orig_coord_info "chr16,69339176,69339552,-" ; protein_id "ENSP00000305459.6" ; tag CAGE_supported_TSS upstream_ATG basic MANE_Select appris_alternative_2 CCDS ; transcript_id "COG8--LSM12^ENST00000306875.10" ; transcript_name "COG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COQ6--MLXP1 HAVANA gene 1377 11969 . + . FI_gene_label "COQ6^ENSG00000119723.17" ; ID "COQ6--MLXP1^COQ6^ENSG00000119723.17" ; ccdsid "CCDS9823.1" ; exon_id "ENSE00002493189.2" ; exon_number 1 ; gene_id "COQ6--MLXP1^COQ6^ENSG00000119723.17" ; gene_name COQ6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171260.4" ; havana_transcript "OTTHUMT00000412616.2" ; hgnc_id "HGNC:20233" ; level 2 ; orig_coord_info "chr14,73950333,73950495,+" ; protein_id "ENSP00000333946.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--MLXP1^ENST00000334571.7" ; transcript_name "COQ6-201" ; transcript_support_level 1 ; transcript_type protein_coding
COQ6--MLXP1 HAVANA mRNA 1377 11969 . + . FI_gene_label "COQ6^ENSG00000119723.17" ; ID "COQ6--MLXP1^ENST00000334571.7" ; Parent "COQ6--MLXP1^COQ6^ENSG00000119723.17" ; ccdsid "CCDS9823.1" ; exon_id "ENSE00002493189.2" ; exon_number 1 ; gene_id "COQ6--MLXP1^COQ6^ENSG00000119723.17" ; gene_name COQ6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171260.4" ; havana_transcript "OTTHUMT00000412616.2" ; hgnc_id "HGNC:20233" ; level 2 ; orig_coord_info "chr14,73950333,73950495,+" ; protein_id "ENSP00000333946.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--MLXP1^ENST00000334571.7" ; transcript_name "COQ6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COQ6--SCG2 HAVANA gene 14970 18546 . + . FI_gene_label "SCG2^ENSG00000171951.5" ; ID "COQ6--SCG2^SCG2^ENSG00000171951.5" ; ccdsid "CCDS2457.1" ; exon_id "ENSE00001147047.3" ; exon_number 2 ; gene_id "COQ6--SCG2^SCG2^ENSG00000171951.5" ; gene_name SCG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133166.5" ; havana_transcript "OTTHUMT00000256870.3" ; hgnc_id "HGNC:10575" ; level 2 ; orig_coord_info "chr2,223597432,223599282,-" ; protein_id "ENSP00000304133.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--SCG2^ENST00000305409.3" ; transcript_name "SCG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
COQ6--SCG2 HAVANA mRNA 14970 18546 . + . FI_gene_label "SCG2^ENSG00000171951.5" ; ID "COQ6--SCG2^ENST00000305409.3" ; Parent "COQ6--SCG2^SCG2^ENSG00000171951.5" ; ccdsid "CCDS2457.1" ; exon_id "ENSE00001147047.3" ; exon_number 2 ; gene_id "COQ6--SCG2^SCG2^ENSG00000171951.5" ; gene_name SCG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133166.5" ; havana_transcript "OTTHUMT00000256870.3" ; hgnc_id "HGNC:10575" ; level 2 ; orig_coord_info "chr2,223597432,223599282,-" ; protein_id "ENSP00000304133.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--SCG2^ENST00000305409.3" ; transcript_name "SCG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COQ6--SCG2 HAVANA gene 1377 11969 . + . FI_gene_label "COQ6^ENSG00000119723.17" ; ID "COQ6--SCG2^COQ6^ENSG00000119723.17" ; ccdsid "CCDS9823.1" ; exon_id "ENSE00002493189.2" ; exon_number 1 ; gene_id "COQ6--SCG2^COQ6^ENSG00000119723.17" ; gene_name COQ6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171260.4" ; havana_transcript "OTTHUMT00000412616.2" ; hgnc_id "HGNC:20233" ; level 2 ; orig_coord_info "chr14,73950333,73950495,+" ; protein_id "ENSP00000333946.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--SCG2^ENST00000334571.7" ; transcript_name "COQ6-201" ; transcript_support_level 1 ; transcript_type protein_coding
COQ6--SCG2 HAVANA mRNA 1377 11969 . + . FI_gene_label "COQ6^ENSG00000119723.17" ; ID "COQ6--SCG2^ENST00000334571.7" ; Parent "COQ6--SCG2^COQ6^ENSG00000119723.17" ; ccdsid "CCDS9823.1" ; exon_id "ENSE00002493189.2" ; exon_number 1 ; gene_id "COQ6--SCG2^COQ6^ENSG00000119723.17" ; gene_name COQ6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171260.4" ; havana_transcript "OTTHUMT00000412616.2" ; hgnc_id "HGNC:20233" ; level 2 ; orig_coord_info "chr14,73950333,73950495,+" ; protein_id "ENSP00000333946.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COQ6--SCG2^ENST00000334571.7" ; transcript_name "COQ6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYB5B--MPP2 HAVANA gene 16220 32079 . + . FI_gene_label "MPP2^ENSG00000108852.15" ; ID "CYB5B--MPP2^MPP2^ENSG00000108852.15" ; ccdsid "CCDS11471.1" ; exon_id "ENSE00003602328.1" ; exon_number 2 ; gene_id "CYB5B--MPP2^MPP2^ENSG00000108852.15" ; gene_name MPP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133840.5" ; havana_transcript "OTTHUMT00000258386.2" ; hgnc_id "HGNC:7220" ; level 2 ; orig_coord_info "chr17,43904430,43904460,-" ; protein_id "ENSP00000269095.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CYB5B--MPP2^ENST00000269095.9" ; transcript_name "MPP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYB5B--MPP2 HAVANA mRNA 16220 32079 . + . FI_gene_label "MPP2^ENSG00000108852.15" ; ID "CYB5B--MPP2^ENST00000269095.9" ; Parent "CYB5B--MPP2^MPP2^ENSG00000108852.15" ; ccdsid "CCDS11471.1" ; exon_id "ENSE00003602328.1" ; exon_number 2 ; gene_id "CYB5B--MPP2^MPP2^ENSG00000108852.15" ; gene_name MPP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133840.5" ; havana_transcript "OTTHUMT00000258386.2" ; hgnc_id "HGNC:7220" ; level 2 ; orig_coord_info "chr17,43904430,43904460,-" ; protein_id "ENSP00000269095.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CYB5B--MPP2^ENST00000269095.9" ; transcript_name "MPP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYB5B--MPP2 HAVANA gene 1001 11643 . + . FI_gene_label "CYB5B^ENSG00000103018.17" ; ID "CYB5B--MPP2^CYB5B^ENSG00000103018.17" ; ccdsid "CCDS10880.2" ; exon_id "ENSE00002322000.2" ; exon_number 1 ; gene_id "CYB5B--MPP2^CYB5B^ENSG00000103018.17" ; gene_name CYB5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133020.7" ; havana_transcript "OTTHUMT00000256606.3" ; hgnc_id "HGNC:24374" ; level 2 ; orig_coord_info "chr16,69424684,69424857,+" ; protein_id "ENSP00000308430.8" ; tag downstream_ATG basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYB5B--MPP2^ENST00000307892.13" ; transcript_name "CYB5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYB5B--MPP2 HAVANA mRNA 1001 11643 . + . FI_gene_label "CYB5B^ENSG00000103018.17" ; ID "CYB5B--MPP2^ENST00000307892.13" ; Parent "CYB5B--MPP2^CYB5B^ENSG00000103018.17" ; ccdsid "CCDS10880.2" ; exon_id "ENSE00002322000.2" ; exon_number 1 ; gene_id "CYB5B--MPP2^CYB5B^ENSG00000103018.17" ; gene_name CYB5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133020.7" ; havana_transcript "OTTHUMT00000256606.3" ; hgnc_id "HGNC:24374" ; level 2 ; orig_coord_info "chr16,69424684,69424857,+" ; protein_id "ENSP00000308430.8" ; tag downstream_ATG basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYB5B--MPP2^ENST00000307892.13" ; transcript_name "CYB5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYLD--NKD1 HAVANA gene 33074 58517 . + . FI_gene_label "NKD1^ENSG00000140807.7" ; ID "CYLD--NKD1^NKD1^ENSG00000140807.7" ; ccdsid "CCDS10743.1" ; exon_id "ENSE00001320873.3" ; exon_number 1 ; gene_id "CYLD--NKD1^NKD1^ENSG00000140807.7" ; gene_name NKD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133169.7" ; havana_transcript "OTTHUMT00000256873.4" ; hgnc_id "HGNC:17045" ; level 2 ; orig_coord_info "chr16,50548554,50548578,+" ; protein_id "ENSP00000268459.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYLD--NKD1^ENST00000268459.6" ; transcript_name "NKD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYLD--NKD1 HAVANA mRNA 33074 58517 . + . FI_gene_label "NKD1^ENSG00000140807.7" ; ID "CYLD--NKD1^ENST00000268459.6" ; Parent "CYLD--NKD1^NKD1^ENSG00000140807.7" ; ccdsid "CCDS10743.1" ; exon_id "ENSE00001320873.3" ; exon_number 1 ; gene_id "CYLD--NKD1^NKD1^ENSG00000140807.7" ; gene_name NKD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133169.7" ; havana_transcript "OTTHUMT00000256873.4" ; hgnc_id "HGNC:17045" ; level 2 ; orig_coord_info "chr16,50548554,50548578,+" ; protein_id "ENSP00000268459.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYLD--NKD1^ENST00000268459.6" ; transcript_name "NKD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYLD--NKD1 HAVANA gene 1025 26755 . + . FI_gene_label "CYLD^ENSG00000083799.18" ; ID "CYLD--NKD1^CYLD^ENSG00000083799.18" ; ccdsid "CCDS45482.1" ; exon_id "ENSE00003516554.1" ; exon_number 4 ; gene_id "CYLD--NKD1^CYLD^ENSG00000083799.18" ; gene_name CYLD ; gene_type protein_coding ; havana_gene "OTTHUMG00000173404.5" ; havana_transcript "OTTHUMT00000422992.2" ; hgnc_id "HGNC:2584" ; level 2 ; orig_coord_info "chr16,50749699,50750202,+" ; protein_id "ENSP00000308928.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "CYLD--NKD1^ENST00000311559.13" ; transcript_name "CYLD-201" ; transcript_support_level 5 ; transcript_type protein_coding
CYLD--NKD1 HAVANA mRNA 1025 26755 . + . FI_gene_label "CYLD^ENSG00000083799.18" ; ID "CYLD--NKD1^ENST00000311559.13" ; Parent "CYLD--NKD1^CYLD^ENSG00000083799.18" ; ccdsid "CCDS45482.1" ; exon_id "ENSE00003516554.1" ; exon_number 4 ; gene_id "CYLD--NKD1^CYLD^ENSG00000083799.18" ; gene_name CYLD ; gene_type protein_coding ; havana_gene "OTTHUMG00000173404.5" ; havana_transcript "OTTHUMT00000422992.2" ; hgnc_id "HGNC:2584" ; level 2 ; orig_coord_info "chr16,50749699,50750202,+" ; protein_id "ENSP00000308928.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "CYLD--NKD1^ENST00000311559.13" ; transcript_name "CYLD-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DHX9--LINC01720 HAVANA gene 1001 26498 . + . FI_gene_label "DHX9^ENSG00000135829.17" ; ID "DHX9--LINC01720^DHX9^ENSG00000135829.17" ; ccdsid "CCDS41444.1" ; exon_id "ENSE00003559534.1" ; exon_number 2 ; gene_id "DHX9--LINC01720^DHX9^ENSG00000135829.17" ; gene_name DHX9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035337.6" ; havana_transcript "OTTHUMT00000085522.3" ; hgnc_id "HGNC:2750" ; level 2 ; orig_coord_info "chr1,182842567,182842677,+" ; protein_id "ENSP00000356520.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX9--LINC01720^ENST00000367549.4" ; transcript_name "DHX9-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHX9--LINC01720 HAVANA mRNA 1001 26498 . + . FI_gene_label "DHX9^ENSG00000135829.17" ; ID "DHX9--LINC01720^ENST00000367549.4" ; Parent "DHX9--LINC01720^DHX9^ENSG00000135829.17" ; ccdsid "CCDS41444.1" ; exon_id "ENSE00003559534.1" ; exon_number 2 ; gene_id "DHX9--LINC01720^DHX9^ENSG00000135829.17" ; gene_name DHX9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035337.6" ; havana_transcript "OTTHUMT00000085522.3" ; hgnc_id "HGNC:2750" ; level 2 ; orig_coord_info "chr1,182842567,182842677,+" ; protein_id "ENSP00000356520.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX9--LINC01720^ENST00000367549.4" ; transcript_name "DHX9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXPH5--TSPAN18 HAVANA gene 1001 19760 . + . FI_gene_label "EXPH5^ENSG00000110723.12" ; ID "EXPH5--TSPAN18^EXPH5^ENSG00000110723.12" ; ccdsid "CCDS8341.1" ; exon_id "ENSE00002291286.2" ; exon_number 1 ; gene_id "EXPH5--TSPAN18^EXPH5^ENSG00000110723.12" ; gene_name EXPH5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166536.6" ; havana_transcript "OTTHUMT00000390279.3" ; hgnc_id "HGNC:30578" ; level 2 ; orig_coord_info "chr11,108593418,108593536,-" ; protein_id "ENSP00000265843.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXPH5--TSPAN18^ENST00000265843.9" ; transcript_name "EXPH5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXPH5--TSPAN18 HAVANA mRNA 1001 19760 . + . FI_gene_label "EXPH5^ENSG00000110723.12" ; ID "EXPH5--TSPAN18^ENST00000265843.9" ; Parent "EXPH5--TSPAN18^EXPH5^ENSG00000110723.12" ; ccdsid "CCDS8341.1" ; exon_id "ENSE00002291286.2" ; exon_number 1 ; gene_id "EXPH5--TSPAN18^EXPH5^ENSG00000110723.12" ; gene_name EXPH5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166536.6" ; havana_transcript "OTTHUMT00000390279.3" ; hgnc_id "HGNC:30578" ; level 2 ; orig_coord_info "chr11,108593418,108593536,-" ; protein_id "ENSP00000265843.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXPH5--TSPAN18^ENST00000265843.9" ; transcript_name "EXPH5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXPH5--TSPAN18 ENSEMBL gene 24584 39647 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "EXPH5--TSPAN18^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "EXPH5--TSPAN18^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "EXPH5--TSPAN18^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
EXPH5--TSPAN18 ENSEMBL mRNA 24584 39647 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "EXPH5--TSPAN18^ENST00000340160.7" ; Parent "EXPH5--TSPAN18^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "EXPH5--TSPAN18^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "EXPH5--TSPAN18^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EXT2--EXPH5 HAVANA gene 32856 51615 . + . FI_gene_label "EXPH5^ENSG00000110723.12" ; ID "EXT2--EXPH5^EXPH5^ENSG00000110723.12" ; ccdsid "CCDS8341.1" ; exon_id "ENSE00002291286.2" ; exon_number 1 ; gene_id "EXT2--EXPH5^EXPH5^ENSG00000110723.12" ; gene_name EXPH5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166536.6" ; havana_transcript "OTTHUMT00000390279.3" ; hgnc_id "HGNC:30578" ; level 2 ; orig_coord_info "chr11,108593418,108593536,-" ; protein_id "ENSP00000265843.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXT2--EXPH5^ENST00000265843.9" ; transcript_name "EXPH5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXT2--EXPH5 HAVANA mRNA 32856 51615 . + . FI_gene_label "EXPH5^ENSG00000110723.12" ; ID "EXT2--EXPH5^ENST00000265843.9" ; Parent "EXT2--EXPH5^EXPH5^ENSG00000110723.12" ; ccdsid "CCDS8341.1" ; exon_id "ENSE00002291286.2" ; exon_number 1 ; gene_id "EXT2--EXPH5^EXPH5^ENSG00000110723.12" ; gene_name EXPH5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166536.6" ; havana_transcript "OTTHUMT00000390279.3" ; hgnc_id "HGNC:30578" ; level 2 ; orig_coord_info "chr11,108593418,108593536,-" ; protein_id "ENSP00000265843.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EXT2--EXPH5^ENST00000265843.9" ; transcript_name "EXPH5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXT2--EXPH5 HAVANA gene 1551 23318 . + . FI_gene_label "EXT2^ENSG00000151348.15" ; ID "EXT2--EXPH5^EXT2^ENSG00000151348.15" ; ccdsid "CCDS7908.1" ; exon_id "ENSE00003545357.1" ; exon_number 2 ; gene_id "EXT2--EXPH5^EXT2^ENSG00000151348.15" ; gene_name EXT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166498.4" ; havana_transcript "OTTHUMT00000390074.1" ; hgnc_id "HGNC:3513" ; level 2 ; orig_coord_info "chr11,44107713,44108248,+" ; protein_id "ENSP00000342656.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "EXT2--EXPH5^ENST00000343631.3" ; transcript_name "EXT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXT2--EXPH5 HAVANA mRNA 1551 23318 . + . FI_gene_label "EXT2^ENSG00000151348.15" ; ID "EXT2--EXPH5^ENST00000343631.3" ; Parent "EXT2--EXPH5^EXT2^ENSG00000151348.15" ; ccdsid "CCDS7908.1" ; exon_id "ENSE00003545357.1" ; exon_number 2 ; gene_id "EXT2--EXPH5^EXT2^ENSG00000151348.15" ; gene_name EXT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166498.4" ; havana_transcript "OTTHUMT00000390074.1" ; hgnc_id "HGNC:3513" ; level 2 ; orig_coord_info "chr11,44107713,44108248,+" ; protein_id "ENSP00000342656.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "EXT2--EXPH5^ENST00000343631.3" ; transcript_name "EXT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--TM7SF3 HAVANA gene 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--TM7SF3^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--TM7SF3^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--TM7SF3^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--TM7SF3 HAVANA mRNA 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--TM7SF3^ENST00000242737.5" ; Parent "ITPR2--TM7SF3^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--TM7SF3^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--TM7SF3^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--TM7SF3 HAVANA gene 70070 87934 . + . FI_gene_label "TM7SF3^ENSG00000064115.11" ; ID "ITPR2--TM7SF3^TM7SF3^ENSG00000064115.11" ; ccdsid "CCDS8710.1" ; exon_id "ENSE00002232459.2" ; exon_number 1 ; gene_id "ITPR2--TM7SF3^TM7SF3^ENSG00000064115.11" ; gene_name TM7SF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169243.9" ; havana_transcript "OTTHUMT00000403033.2" ; hgnc_id "HGNC:23049" ; level 2 ; orig_coord_info "chr12,27014078,27014168,-" ; protein_id "ENSP00000342322.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITPR2--TM7SF3^ENST00000343028.9" ; transcript_name "TM7SF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--TM7SF3 HAVANA mRNA 70070 87934 . + . FI_gene_label "TM7SF3^ENSG00000064115.11" ; ID "ITPR2--TM7SF3^ENST00000343028.9" ; Parent "ITPR2--TM7SF3^TM7SF3^ENSG00000064115.11" ; ccdsid "CCDS8710.1" ; exon_id "ENSE00002232459.2" ; exon_number 1 ; gene_id "ITPR2--TM7SF3^TM7SF3^ENSG00000064115.11" ; gene_name TM7SF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169243.9" ; havana_transcript "OTTHUMT00000403033.2" ; hgnc_id "HGNC:23049" ; level 2 ; orig_coord_info "chr12,27014078,27014168,-" ; protein_id "ENSP00000342322.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITPR2--TM7SF3^ENST00000343028.9" ; transcript_name "TM7SF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LAMTOR2--HDGF HAVANA gene 11016 16650 . + . FI_gene_label "HDGF^ENSG00000143321.19" ; ID "LAMTOR2--HDGF^HDGF^ENSG00000143321.19" ; ccdsid "CCDS1156.1" ; exon_id "ENSE00001425593.5" ; exon_number 1 ; gene_id "LAMTOR2--HDGF^HDGF^ENSG00000143321.19" ; gene_name HDGF ; gene_type protein_coding ; havana_gene "OTTHUMG00000041295.2" ; havana_transcript "OTTHUMT00000098946.2" ; hgnc_id "HGNC:4856" ; level 2 ; orig_coord_info "chr1,156751343,156751429,-" ; protein_id "ENSP00000349878.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LAMTOR2--HDGF^ENST00000357325.10" ; transcript_name "HDGF-201" ; transcript_support_level 1 ; transcript_type protein_coding
LAMTOR2--HDGF HAVANA mRNA 11016 16650 . + . FI_gene_label "HDGF^ENSG00000143321.19" ; ID "LAMTOR2--HDGF^ENST00000357325.10" ; Parent "LAMTOR2--HDGF^HDGF^ENSG00000143321.19" ; ccdsid "CCDS1156.1" ; exon_id "ENSE00001425593.5" ; exon_number 1 ; gene_id "LAMTOR2--HDGF^HDGF^ENSG00000143321.19" ; gene_name HDGF ; gene_type protein_coding ; havana_gene "OTTHUMG00000041295.2" ; havana_transcript "OTTHUMT00000098946.2" ; hgnc_id "HGNC:4856" ; level 2 ; orig_coord_info "chr1,156751343,156751429,-" ; protein_id "ENSP00000349878.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LAMTOR2--HDGF^ENST00000357325.10" ; transcript_name "HDGF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LAMTOR2--HDGF HAVANA gene 1069 3738 . + . FI_gene_label "LAMTOR2^ENSG00000116586.12" ; ID "LAMTOR2--HDGF^LAMTOR2^ENSG00000116586.12" ; exon_id "ENSE00001446815.1" ; exon_number 1 ; gene_id "LAMTOR2--HDGF^LAMTOR2^ENSG00000116586.12" ; gene_name LAMTOR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017462.2" ; havana_transcript "OTTHUMT00000046199.1" ; hgnc_id "HGNC:29796" ; level 2 ; orig_coord_info "chr1,156054890,156054957,+" ; protein_id "ENSP00000357285.3" ; tag basic ; transcript_id "LAMTOR2--HDGF^ENST00000368302.3" ; transcript_name "LAMTOR2-201" ; transcript_support_level 3 ; transcript_type protein_coding
LAMTOR2--HDGF HAVANA mRNA 1069 3738 . + . FI_gene_label "LAMTOR2^ENSG00000116586.12" ; ID "LAMTOR2--HDGF^ENST00000368302.3" ; Parent "LAMTOR2--HDGF^LAMTOR2^ENSG00000116586.12" ; exon_id "ENSE00001446815.1" ; exon_number 1 ; gene_id "LAMTOR2--HDGF^LAMTOR2^ENSG00000116586.12" ; gene_name LAMTOR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017462.2" ; havana_transcript "OTTHUMT00000046199.1" ; hgnc_id "HGNC:29796" ; level 2 ; orig_coord_info "chr1,156054890,156054957,+" ; protein_id "ENSP00000357285.3" ; tag basic ; transcript_id "LAMTOR2--HDGF^ENST00000368302.3" ; transcript_name "LAMTOR2-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
MARK2--CCDC82 HAVANA gene 29919 51108 . + . FI_gene_label "CCDC82^ENSG00000149231.16" ; ID "MARK2--CCDC82^CCDC82^ENSG00000149231.16" ; ccdsid "CCDS8307.1" ; exon_id "ENSE00002156584.1" ; exon_number 3 ; gene_id "MARK2--CCDC82^CCDC82^ENSG00000149231.16" ; gene_name CCDC82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167678.6" ; havana_transcript "OTTHUMT00000395542.2" ; hgnc_id "HGNC:26282" ; level 2 ; orig_coord_info "chr11,96383962,96384747,-" ; protein_id "ENSP00000278520.5" ; tag basic CCDS ; transcript_id "MARK2--CCDC82^ENST00000278520.9" ; transcript_name "CCDC82-201" ; transcript_support_level 5 ; transcript_type protein_coding
MARK2--CCDC82 HAVANA mRNA 29919 51108 . + . FI_gene_label "CCDC82^ENSG00000149231.16" ; ID "MARK2--CCDC82^ENST00000278520.9" ; Parent "MARK2--CCDC82^CCDC82^ENSG00000149231.16" ; ccdsid "CCDS8307.1" ; exon_id "ENSE00002156584.1" ; exon_number 3 ; gene_id "MARK2--CCDC82^CCDC82^ENSG00000149231.16" ; gene_name CCDC82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167678.6" ; havana_transcript "OTTHUMT00000395542.2" ; hgnc_id "HGNC:26282" ; level 2 ; orig_coord_info "chr11,96383962,96384747,-" ; protein_id "ENSP00000278520.5" ; tag basic CCDS ; transcript_id "MARK2--CCDC82^ENST00000278520.9" ; transcript_name "CCDC82-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MARK2--CCDC82 HAVANA gene 1166 23442 . + . FI_gene_label "MARK2^ENSG00000072518.22" ; ID "MARK2--CCDC82^MARK2^ENSG00000072518.22" ; ccdsid "CCDS53651.1" ; exon_id "ENSE00001475203.5" ; exon_number 1 ; gene_id "MARK2--CCDC82^MARK2^ENSG00000072518.22" ; gene_name MARK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160504.7" ; havana_transcript "OTTHUMT00000396088.1" ; hgnc_id "HGNC:3332" ; level 2 ; orig_coord_info "chr11,63839507,63839560,+" ; protein_id "ENSP00000294247.9" ; tag basic CCDS ; transcript_id "MARK2--CCDC82^ENST00000350490.11" ; transcript_name "MARK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK2--CCDC82 HAVANA mRNA 1166 23442 . + . FI_gene_label "MARK2^ENSG00000072518.22" ; ID "MARK2--CCDC82^ENST00000350490.11" ; Parent "MARK2--CCDC82^MARK2^ENSG00000072518.22" ; ccdsid "CCDS53651.1" ; exon_id "ENSE00001475203.5" ; exon_number 1 ; gene_id "MARK2--CCDC82^MARK2^ENSG00000072518.22" ; gene_name MARK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160504.7" ; havana_transcript "OTTHUMT00000396088.1" ; hgnc_id "HGNC:3332" ; level 2 ; orig_coord_info "chr11,63839507,63839560,+" ; protein_id "ENSP00000294247.9" ; tag basic CCDS ; transcript_id "MARK2--CCDC82^ENST00000350490.11" ; transcript_name "MARK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED21--AC023051.1 HAVANA gene 1013 6580 . + . FI_gene_label "MED21^ENSG00000152944.9" ; ID "MED21--AC023051.1^MED21^ENSG00000152944.9" ; ccdsid "CCDS8711.1" ; exon_id "ENSE00003687374.2" ; exon_number 1 ; gene_id "MED21--AC023051.1^MED21^ENSG00000152944.9" ; gene_name MED21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169276.4" ; havana_transcript "OTTHUMT00000403262.2" ; hgnc_id "HGNC:11473" ; level 2 ; orig_coord_info "chr12,27022580,27022621,+" ; protein_id "ENSP00000282892.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED21--AC023051.1^ENST00000282892.4" ; transcript_name "MED21-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED21--AC023051.1 HAVANA mRNA 1013 6580 . + . FI_gene_label "MED21^ENSG00000152944.9" ; ID "MED21--AC023051.1^ENST00000282892.4" ; Parent "MED21--AC023051.1^MED21^ENSG00000152944.9" ; ccdsid "CCDS8711.1" ; exon_id "ENSE00003687374.2" ; exon_number 1 ; gene_id "MED21--AC023051.1^MED21^ENSG00000152944.9" ; gene_name MED21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169276.4" ; havana_transcript "OTTHUMT00000403262.2" ; hgnc_id "HGNC:11473" ; level 2 ; orig_coord_info "chr12,27022580,27022621,+" ; protein_id "ENSP00000282892.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED21--AC023051.1^ENST00000282892.4" ; transcript_name "MED21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPS14--LINC01724 HAVANA gene 1011 3920 . + . FI_gene_label "MRPS14^ENSG00000120333.4" ; ID "MRPS14--LINC01724^MRPS14^ENSG00000120333.4" ; exon_id "ENSE00001932658.1" ; exon_number 1 ; gene_id "MRPS14--LINC01724^MRPS14^ENSG00000120333.4" ; gene_name MRPS14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034878.4" ; havana_transcript "OTTHUMT00000084417.4" ; hgnc_id "HGNC:14049" ; level 2 ; orig_coord_info "chr1,175023272,175023408,-" ; protein_id "ENSP00000431220.1" ; transcript_id "MRPS14--LINC01724^ENST00000367677.3" ; transcript_name "MRPS14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
MRPS14--LINC01724 HAVANA mRNA 1011 3920 . + . FI_gene_label "MRPS14^ENSG00000120333.4" ; ID "MRPS14--LINC01724^ENST00000367677.3" ; Parent "MRPS14--LINC01724^MRPS14^ENSG00000120333.4" ; exon_id "ENSE00001932658.1" ; exon_number 1 ; gene_id "MRPS14--LINC01724^MRPS14^ENSG00000120333.4" ; gene_name MRPS14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034878.4" ; havana_transcript "OTTHUMT00000084417.4" ; hgnc_id "HGNC:14049" ; level 2 ; orig_coord_info "chr1,175023272,175023408,-" ; protein_id "ENSP00000431220.1" ; transcript_id "MRPS14--LINC01724^ENST00000367677.3" ; transcript_name "MRPS14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PAPOLA--AK7 HAVANA gene 1941 30890 . + . FI_gene_label "PAPOLA^ENSG00000090060.18" ; ID "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; ccdsid "CCDS9946.1" ; exon_id "ENSE00002461848.1" ; exon_number 1 ; gene_id "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; gene_name PAPOLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000171441.5" ; havana_transcript "OTTHUMT00000413411.2" ; hgnc_id "HGNC:14981" ; level 2 ; orig_coord_info "chr14,96502593,96502600,+" ; protein_id "ENSP00000216277.8" ; tag basic appris_principal_2 CCDS ; transcript_id "PAPOLA--AK7^ENST00000216277.12" ; transcript_name "PAPOLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAPOLA--AK7 HAVANA mRNA 1941 30890 . + . FI_gene_label "PAPOLA^ENSG00000090060.18" ; ID "PAPOLA--AK7^ENST00000216277.12" ; Parent "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; ccdsid "CCDS9946.1" ; exon_id "ENSE00002461848.1" ; exon_number 1 ; gene_id "PAPOLA--AK7^PAPOLA^ENSG00000090060.18" ; gene_name PAPOLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000171441.5" ; havana_transcript "OTTHUMT00000413411.2" ; hgnc_id "HGNC:14981" ; level 2 ; orig_coord_info "chr14,96502593,96502600,+" ; protein_id "ENSP00000216277.8" ; tag basic appris_principal_2 CCDS ; transcript_id "PAPOLA--AK7^ENST00000216277.12" ; transcript_name "PAPOLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PAPOLA--AK7 HAVANA gene 33891 56288 . + . FI_gene_label "AK7^ENSG00000140057.9" ; ID "PAPOLA--AK7^AK7^ENSG00000140057.9" ; ccdsid "CCDS9945.1" ; exon_id "ENSE00001175774.4" ; exon_number 1 ; gene_id "PAPOLA--AK7^AK7^ENSG00000140057.9" ; gene_name AK7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171421.2" ; havana_transcript "OTTHUMT00000413340.2" ; hgnc_id "HGNC:20091" ; level 2 ; orig_coord_info "chr14,96392155,96392259,+" ; protein_id "ENSP00000267584.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAPOLA--AK7^ENST00000267584.9" ; transcript_name "AK7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAPOLA--AK7 HAVANA mRNA 33891 56288 . + . FI_gene_label "AK7^ENSG00000140057.9" ; ID "PAPOLA--AK7^ENST00000267584.9" ; Parent "PAPOLA--AK7^AK7^ENSG00000140057.9" ; ccdsid "CCDS9945.1" ; exon_id "ENSE00001175774.4" ; exon_number 1 ; gene_id "PAPOLA--AK7^AK7^ENSG00000140057.9" ; gene_name AK7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171421.2" ; havana_transcript "OTTHUMT00000413340.2" ; hgnc_id "HGNC:20091" ; level 2 ; orig_coord_info "chr14,96392155,96392259,+" ; protein_id "ENSP00000267584.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAPOLA--AK7^ENST00000267584.9" ; transcript_name "AK7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCCA--CLYBL HAVANA gene 40674 51303 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PCCA--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCCA--CLYBL HAVANA mRNA 40674 51303 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "PCCA--CLYBL^ENST00000339105.8" ; Parent "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PCCA--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCCA--CLYBL ENSEMBL gene 1001 37641 . + . FI_gene_label "PCCA^ENSG00000175198.17" ; ID "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; ccdsid "CCDS53878.1" ; exon_id "ENSE00002300882.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; gene_name PCCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017284.13" ; hgnc_id "HGNC:8653" ; level 3 ; orig_coord_info "chr13,100089121,100089225,+" ; protein_id "ENSP00000365456.3" ; tag basic CCDS ; transcript_id "PCCA--CLYBL^ENST00000376279.7" ; transcript_name "PCCA-201" ; transcript_support_level 2 ; transcript_type protein_coding
PCCA--CLYBL ENSEMBL mRNA 1001 37641 . + . FI_gene_label "PCCA^ENSG00000175198.17" ; ID "PCCA--CLYBL^ENST00000376279.7" ; Parent "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; ccdsid "CCDS53878.1" ; exon_id "ENSE00002300882.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; gene_name PCCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017284.13" ; hgnc_id "HGNC:8653" ; level 3 ; orig_coord_info "chr13,100089121,100089225,+" ; protein_id "ENSP00000365456.3" ; tag basic CCDS ; transcript_id "PCCA--CLYBL^ENST00000376279.7" ; transcript_name "PCCA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PGAP1--ANKRD44 HAVANA gene 41210 81019 . + . FI_gene_label "ANKRD44^ENSG00000065413.20" ; ID "PGAP1--ANKRD44^ANKRD44^ENSG00000065413.20" ; ccdsid "CCDS74619.1" ; exon_id "ENSE00003795682.3" ; exon_number 1 ; gene_id "PGAP1--ANKRD44^ANKRD44^ENSG00000065413.20" ; gene_name ANKRD44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154411.12" ; havana_transcript "OTTHUMT00000335117.3" ; hgnc_id "HGNC:25259" ; level 2 ; orig_coord_info "chr2,197310578,197310604,-" ; protein_id "ENSP00000282272.9" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP1--ANKRD44^ENST00000282272.15" ; transcript_name "ANKRD44-201" ; transcript_support_level 5 ; transcript_type protein_coding
PGAP1--ANKRD44 HAVANA mRNA 41210 81019 . + . FI_gene_label "ANKRD44^ENSG00000065413.20" ; ID "PGAP1--ANKRD44^ENST00000282272.15" ; Parent "PGAP1--ANKRD44^ANKRD44^ENSG00000065413.20" ; ccdsid "CCDS74619.1" ; exon_id "ENSE00003795682.3" ; exon_number 1 ; gene_id "PGAP1--ANKRD44^ANKRD44^ENSG00000065413.20" ; gene_name ANKRD44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154411.12" ; havana_transcript "OTTHUMT00000335117.3" ; hgnc_id "HGNC:25259" ; level 2 ; orig_coord_info "chr2,197310578,197310604,-" ; protein_id "ENSP00000282272.9" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP1--ANKRD44^ENST00000282272.15" ; transcript_name "ANKRD44-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PGAP1--ANKRD44 HAVANA gene 2090 37816 . + . FI_gene_label "PGAP1^ENSG00000197121.15" ; ID "PGAP1--ANKRD44^PGAP1^ENSG00000197121.15" ; ccdsid "CCDS2318.1" ; exon_id "ENSE00001901317.2" ; exon_number 1 ; gene_id "PGAP1--ANKRD44^PGAP1^ENSG00000197121.15" ; gene_name PGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132743.7" ; havana_transcript "OTTHUMT00000256103.6" ; hgnc_id "HGNC:25712" ; level 2 ; orig_coord_info "chr2,196926470,196926616,-" ; protein_id "ENSP00000346809.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP1--ANKRD44^ENST00000354764.9" ; transcript_name "PGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGAP1--ANKRD44 HAVANA mRNA 2090 37816 . + . FI_gene_label "PGAP1^ENSG00000197121.15" ; ID "PGAP1--ANKRD44^ENST00000354764.9" ; Parent "PGAP1--ANKRD44^PGAP1^ENSG00000197121.15" ; ccdsid "CCDS2318.1" ; exon_id "ENSE00001901317.2" ; exon_number 1 ; gene_id "PGAP1--ANKRD44^PGAP1^ENSG00000197121.15" ; gene_name PGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132743.7" ; havana_transcript "OTTHUMT00000256103.6" ; hgnc_id "HGNC:25712" ; level 2 ; orig_coord_info "chr2,196926470,196926616,-" ; protein_id "ENSP00000346809.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP1--ANKRD44^ENST00000354764.9" ; transcript_name "PGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PMS2P8--CCDC146 HAVANA gene 9073 29440 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P8--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P8--CCDC146 HAVANA mRNA 9073 29440 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P8--CCDC146^ENST00000285871.5" ; Parent "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P8--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--GRID2 HAVANA gene 53093 83266 . + . FI_gene_label "GRID2^ENSG00000152208.13" ; ID "PTPRK--GRID2^GRID2^ENSG00000152208.13" ; ccdsid "CCDS3637.1" ; exon_id "ENSE00002056780.3" ; exon_number 1 ; gene_id "PTPRK--GRID2^GRID2^ENSG00000152208.13" ; gene_name GRID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130975.8" ; havana_transcript "OTTHUMT00000253588.4" ; hgnc_id "HGNC:4576" ; level 2 ; orig_coord_info "chr4,92304657,92304744,+" ; protein_id "ENSP00000282020.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPRK--GRID2^ENST00000282020.9" ; transcript_name "GRID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRK--GRID2 HAVANA mRNA 53093 83266 . + . FI_gene_label "GRID2^ENSG00000152208.13" ; ID "PTPRK--GRID2^ENST00000282020.9" ; Parent "PTPRK--GRID2^GRID2^ENSG00000152208.13" ; ccdsid "CCDS3637.1" ; exon_id "ENSE00002056780.3" ; exon_number 1 ; gene_id "PTPRK--GRID2^GRID2^ENSG00000152208.13" ; gene_name GRID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130975.8" ; havana_transcript "OTTHUMT00000253588.4" ; hgnc_id "HGNC:4576" ; level 2 ; orig_coord_info "chr4,92304657,92304744,+" ; protein_id "ENSP00000282020.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPRK--GRID2^ENST00000282020.9" ; transcript_name "GRID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--GRID2 HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--GRID2^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--GRID2^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--GRID2^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--GRID2 HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--GRID2^ENST00000368207.7" ; Parent "PTPRK--GRID2^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--GRID2^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--GRID2^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RANBP2--LIMS1 HAVANA gene 1001 33169 . + . FI_gene_label "RANBP2^ENSG00000153201.16" ; ID "RANBP2--LIMS1^RANBP2^ENSG00000153201.16" ; ccdsid "CCDS2079.1" ; exon_id "ENSE00001427934.2" ; exon_number 1 ; gene_id "RANBP2--LIMS1^RANBP2^ENSG00000153201.16" ; gene_name RANBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130981.11" ; havana_transcript "OTTHUMT00000253594.2" ; hgnc_id "HGNC:9848" ; level 2 ; orig_coord_info "chr2,108719607,108719678,+" ; protein_id "ENSP00000283195.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--LIMS1^ENST00000283195.11" ; transcript_name "RANBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP2--LIMS1 HAVANA mRNA 1001 33169 . + . FI_gene_label "RANBP2^ENSG00000153201.16" ; ID "RANBP2--LIMS1^ENST00000283195.11" ; Parent "RANBP2--LIMS1^RANBP2^ENSG00000153201.16" ; ccdsid "CCDS2079.1" ; exon_id "ENSE00001427934.2" ; exon_number 1 ; gene_id "RANBP2--LIMS1^RANBP2^ENSG00000153201.16" ; gene_name RANBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130981.11" ; havana_transcript "OTTHUMT00000253594.2" ; hgnc_id "HGNC:9848" ; level 2 ; orig_coord_info "chr2,108719607,108719678,+" ; protein_id "ENSP00000283195.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--LIMS1^ENST00000283195.11" ; transcript_name "RANBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP2--LIMS1 HAVANA gene 37410 55589 . + . FI_gene_label "LIMS1^ENSG00000169756.16" ; ID "RANBP2--LIMS1^LIMS1^ENSG00000169756.16" ; ccdsid "CCDS2078.1" ; exon_id "ENSE00003687684.1" ; exon_number 2 ; gene_id "RANBP2--LIMS1^LIMS1^ENSG00000169756.16" ; gene_name LIMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130983.11" ; havana_transcript "OTTHUMT00000330217.1" ; hgnc_id "HGNC:6616" ; level 2 ; orig_coord_info "chr2,108659609,108659764,+" ; protein_id "ENSP00000331775.6" ; tag alternative_5_UTR basic appris_alternative_1 CCDS ; transcript_id "RANBP2--LIMS1^ENST00000332345.10" ; transcript_name "LIMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP2--LIMS1 HAVANA mRNA 37410 55589 . + . FI_gene_label "LIMS1^ENSG00000169756.16" ; ID "RANBP2--LIMS1^ENST00000332345.10" ; Parent "RANBP2--LIMS1^LIMS1^ENSG00000169756.16" ; ccdsid "CCDS2078.1" ; exon_id "ENSE00003687684.1" ; exon_number 2 ; gene_id "RANBP2--LIMS1^LIMS1^ENSG00000169756.16" ; gene_name LIMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130983.11" ; havana_transcript "OTTHUMT00000330217.1" ; hgnc_id "HGNC:6616" ; level 2 ; orig_coord_info "chr2,108659609,108659764,+" ; protein_id "ENSP00000331775.6" ; tag alternative_5_UTR basic appris_alternative_1 CCDS ; transcript_id "RANBP2--LIMS1^ENST00000332345.10" ; transcript_name "LIMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM39--LINC01393 HAVANA gene 1053 26718 . + . FI_gene_label "RBM39^ENSG00000131051.24" ; ID "RBM39--LINC01393^RBM39^ENSG00000131051.24" ; ccdsid "CCDS13266.1" ; exon_id "ENSE00003696124.1" ; exon_number 2 ; gene_id "RBM39--LINC01393^RBM39^ENSG00000131051.24" ; gene_name RBM39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032358.21" ; havana_transcript "OTTHUMT00000078931.5" ; hgnc_id "HGNC:15923" ; level 2 ; orig_coord_info "chr20,35740824,35740874,-" ; protein_id "ENSP00000253363.6" ; tag basic MANE_Select CCDS ; transcript_id "RBM39--LINC01393^ENST00000253363.11" ; transcript_name "RBM39-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM39--LINC01393 HAVANA mRNA 1053 26718 . + . FI_gene_label "RBM39^ENSG00000131051.24" ; ID "RBM39--LINC01393^ENST00000253363.11" ; Parent "RBM39--LINC01393^RBM39^ENSG00000131051.24" ; ccdsid "CCDS13266.1" ; exon_id "ENSE00003696124.1" ; exon_number 2 ; gene_id "RBM39--LINC01393^RBM39^ENSG00000131051.24" ; gene_name RBM39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032358.21" ; havana_transcript "OTTHUMT00000078931.5" ; hgnc_id "HGNC:15923" ; level 2 ; orig_coord_info "chr20,35740824,35740874,-" ; protein_id "ENSP00000253363.6" ; tag basic MANE_Select CCDS ; transcript_id "RBM39--LINC01393^ENST00000253363.11" ; transcript_name "RBM39-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFMBT1--TKT ENSEMBL gene 31697 47961 . + . FI_gene_label "TKT^ENSG00000163931.16" ; ID "SFMBT1--TKT^TKT^ENSG00000163931.16" ; exon_id "ENSE00003716652.1" ; exon_number 6 ; gene_id "SFMBT1--TKT^TKT^ENSG00000163931.16" ; gene_name TKT ; gene_type protein_coding ; havana_gene "OTTHUMG00000158192.3" ; hgnc_id "HGNC:11834" ; level 3 ; orig_coord_info "chr3,53234983,53235113,-" ; protein_id "ENSP00000296289.7" ; tag basic ; transcript_id "SFMBT1--TKT^ENST00000296289.10" ; transcript_name "TKT-201" ; transcript_support_level 5 ; transcript_type protein_coding
SFMBT1--TKT ENSEMBL mRNA 31697 47961 . + . FI_gene_label "TKT^ENSG00000163931.16" ; ID "SFMBT1--TKT^ENST00000296289.10" ; Parent "SFMBT1--TKT^TKT^ENSG00000163931.16" ; exon_id "ENSE00003716652.1" ; exon_number 6 ; gene_id "SFMBT1--TKT^TKT^ENSG00000163931.16" ; gene_name TKT ; gene_type protein_coding ; havana_gene "OTTHUMG00000158192.3" ; hgnc_id "HGNC:11834" ; level 3 ; orig_coord_info "chr3,53234983,53235113,-" ; protein_id "ENSP00000296289.7" ; tag basic ; transcript_id "SFMBT1--TKT^ENST00000296289.10" ; transcript_name "TKT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SFMBT1--TKT HAVANA gene 1678 28657 . + . FI_gene_label "SFMBT1^ENSG00000163935.14" ; ID "SFMBT1--TKT^SFMBT1^ENSG00000163935.14" ; ccdsid "CCDS2867.1" ; exon_id "ENSE00003602396.1" ; exon_number 2 ; gene_id "SFMBT1--TKT^SFMBT1^ENSG00000163935.14" ; gene_name SFMBT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159052.15" ; havana_transcript "OTTHUMT00000353040.4" ; hgnc_id "HGNC:20255" ; level 2 ; orig_coord_info "chr3,52969101,52969128,-" ; protein_id "ENSP00000378235.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--TKT^ENST00000394752.8" ; transcript_name "SFMBT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFMBT1--TKT HAVANA mRNA 1678 28657 . + . FI_gene_label "SFMBT1^ENSG00000163935.14" ; ID "SFMBT1--TKT^ENST00000394752.8" ; Parent "SFMBT1--TKT^SFMBT1^ENSG00000163935.14" ; ccdsid "CCDS2867.1" ; exon_id "ENSE00003602396.1" ; exon_number 2 ; gene_id "SFMBT1--TKT^SFMBT1^ENSG00000163935.14" ; gene_name SFMBT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159052.15" ; havana_transcript "OTTHUMT00000353040.4" ; hgnc_id "HGNC:20255" ; level 2 ; orig_coord_info "chr3,52969101,52969128,-" ; protein_id "ENSP00000378235.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--TKT^ENST00000394752.8" ; transcript_name "SFMBT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SIPA1L2--ANKRD29 ENSEMBL gene 7141 36394 . + . FI_gene_label "SIPA1L2^ENSG00000116991.11" ; ID "SIPA1L2--ANKRD29^SIPA1L2^ENSG00000116991.11" ; ccdsid "CCDS41474.1" ; exon_id "ENSE00001069356.4" ; exon_number 1 ; gene_id "SIPA1L2--ANKRD29^SIPA1L2^ENSG00000116991.11" ; gene_name SIPA1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037820.1" ; hgnc_id "HGNC:23800" ; level 3 ; orig_coord_info "chr1,232513857,232515339,-" ; protein_id "ENSP00000262861.4" ; tag basic appris_principal_2 CCDS ; transcript_id "SIPA1L2--ANKRD29^ENST00000262861.8" ; transcript_name "SIPA1L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SIPA1L2--ANKRD29 ENSEMBL mRNA 7141 36394 . + . FI_gene_label "SIPA1L2^ENSG00000116991.11" ; ID "SIPA1L2--ANKRD29^ENST00000262861.8" ; Parent "SIPA1L2--ANKRD29^SIPA1L2^ENSG00000116991.11" ; ccdsid "CCDS41474.1" ; exon_id "ENSE00001069356.4" ; exon_number 1 ; gene_id "SIPA1L2--ANKRD29^SIPA1L2^ENSG00000116991.11" ; gene_name SIPA1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037820.1" ; hgnc_id "HGNC:23800" ; level 3 ; orig_coord_info "chr1,232513857,232515339,-" ; protein_id "ENSP00000262861.4" ; tag basic appris_principal_2 CCDS ; transcript_id "SIPA1L2--ANKRD29^ENST00000262861.8" ; transcript_name "SIPA1L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SIPA1L2--ANKRD29 HAVANA gene 39494 54012 . + . FI_gene_label "ANKRD29^ENSG00000154065.17" ; ID "SIPA1L2--ANKRD29^ANKRD29^ENSG00000154065.17" ; ccdsid "CCDS77164.1" ; exon_id "ENSE00002951634.1" ; exon_number 1 ; gene_id "SIPA1L2--ANKRD29^ANKRD29^ENSG00000154065.17" ; gene_name ANKRD29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131875.6" ; havana_transcript "OTTHUMT00000445527.1" ; hgnc_id "HGNC:27110" ; level 2 ; orig_coord_info "chr18,23662710,23662730,-" ; protein_id "ENSP00000323387.9" ; tag basic CCDS ; transcript_id "SIPA1L2--ANKRD29^ENST00000322980.13" ; transcript_name "ANKRD29-201" ; transcript_support_level 2 ; transcript_type protein_coding
SIPA1L2--ANKRD29 HAVANA mRNA 39494 54012 . + . FI_gene_label "ANKRD29^ENSG00000154065.17" ; ID "SIPA1L2--ANKRD29^ENST00000322980.13" ; Parent "SIPA1L2--ANKRD29^ANKRD29^ENSG00000154065.17" ; ccdsid "CCDS77164.1" ; exon_id "ENSE00002951634.1" ; exon_number 1 ; gene_id "SIPA1L2--ANKRD29^ANKRD29^ENSG00000154065.17" ; gene_name ANKRD29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131875.6" ; havana_transcript "OTTHUMT00000445527.1" ; hgnc_id "HGNC:27110" ; level 2 ; orig_coord_info "chr18,23662710,23662730,-" ; protein_id "ENSP00000323387.9" ; tag basic CCDS ; transcript_id "SIPA1L2--ANKRD29^ENST00000322980.13" ; transcript_name "ANKRD29-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SNX14--SYNCRIP HAVANA gene 1299 32584 . + . FI_gene_label "SNX14^ENSG00000135317.13" ; ID "SNX14--SYNCRIP^SNX14^ENSG00000135317.13" ; ccdsid "CCDS5004.1" ; exon_id "ENSE00002068092.2" ; exon_number 1 ; gene_id "SNX14--SYNCRIP^SNX14^ENSG00000135317.13" ; gene_name SNX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015140.7" ; havana_transcript "OTTHUMT00000041393.3" ; hgnc_id "HGNC:14977" ; level 2 ; orig_coord_info "chr6,85593579,85593718,-" ; protein_id "ENSP00000313121.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SNX14--SYNCRIP^ENST00000314673.8" ; transcript_name "SNX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX14--SYNCRIP HAVANA mRNA 1299 32584 . + . FI_gene_label "SNX14^ENSG00000135317.13" ; ID "SNX14--SYNCRIP^ENST00000314673.8" ; Parent "SNX14--SYNCRIP^SNX14^ENSG00000135317.13" ; ccdsid "CCDS5004.1" ; exon_id "ENSE00002068092.2" ; exon_number 1 ; gene_id "SNX14--SYNCRIP^SNX14^ENSG00000135317.13" ; gene_name SNX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015140.7" ; havana_transcript "OTTHUMT00000041393.3" ; hgnc_id "HGNC:14977" ; level 2 ; orig_coord_info "chr6,85593579,85593718,-" ; protein_id "ENSP00000313121.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SNX14--SYNCRIP^ENST00000314673.8" ; transcript_name "SNX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX14--SYNCRIP HAVANA gene 36657 53619 . + . FI_gene_label "SYNCRIP^ENSG00000135316.19" ; ID "SNX14--SYNCRIP^SYNCRIP^ENSG00000135316.19" ; ccdsid "CCDS55041.1" ; exon_id "ENSE00001450462.1" ; exon_number 2 ; gene_id "SNX14--SYNCRIP^SYNCRIP^ENSG00000135316.19" ; gene_name SYNCRIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015141.5" ; havana_transcript "OTTHUMT00000041397.2" ; hgnc_id "HGNC:16918" ; level 2 ; orig_coord_info "chr6,85641292,85641439,-" ; protein_id "ENSP00000347380.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "SNX14--SYNCRIP^ENST00000355238.11" ; transcript_name "SYNCRIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX14--SYNCRIP HAVANA mRNA 36657 53619 . + . FI_gene_label "SYNCRIP^ENSG00000135316.19" ; ID "SNX14--SYNCRIP^ENST00000355238.11" ; Parent "SNX14--SYNCRIP^SYNCRIP^ENSG00000135316.19" ; ccdsid "CCDS55041.1" ; exon_id "ENSE00001450462.1" ; exon_number 2 ; gene_id "SNX14--SYNCRIP^SYNCRIP^ENSG00000135316.19" ; gene_name SYNCRIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015141.5" ; havana_transcript "OTTHUMT00000041397.2" ; hgnc_id "HGNC:16918" ; level 2 ; orig_coord_info "chr6,85641292,85641439,-" ; protein_id "ENSP00000347380.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "SNX14--SYNCRIP^ENST00000355238.11" ; transcript_name "SYNCRIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STARD13--AL139383.1 HAVANA gene 7683 28646 . + . FI_gene_label "STARD13^ENSG00000133121.21" ; ID "STARD13--AL139383.1^STARD13^ENSG00000133121.21" ; ccdsid "CCDS9349.1" ; exon_id "ENSE00001333091.2" ; exon_number 1 ; gene_id "STARD13--AL139383.1^STARD13^ENSG00000133121.21" ; gene_name STARD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016708.8" ; havana_transcript "OTTHUMT00000044439.3" ; hgnc_id "HGNC:19164" ; level 2 ; orig_coord_info "chr13,33185878,33186022,-" ; protein_id "ENSP00000255486.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "STARD13--AL139383.1^ENST00000255486.8" ; transcript_name "STARD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
STARD13--AL139383.1 HAVANA mRNA 7683 28646 . + . FI_gene_label "STARD13^ENSG00000133121.21" ; ID "STARD13--AL139383.1^ENST00000255486.8" ; Parent "STARD13--AL139383.1^STARD13^ENSG00000133121.21" ; ccdsid "CCDS9349.1" ; exon_id "ENSE00001333091.2" ; exon_number 1 ; gene_id "STARD13--AL139383.1^STARD13^ENSG00000133121.21" ; gene_name STARD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016708.8" ; havana_transcript "OTTHUMT00000044439.3" ; hgnc_id "HGNC:19164" ; level 2 ; orig_coord_info "chr13,33185878,33186022,-" ; protein_id "ENSP00000255486.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "STARD13--AL139383.1^ENST00000255486.8" ; transcript_name "STARD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TECPR1--BAIAP2L1 HAVANA gene 28752 45758 . + . FI_gene_label "BAIAP2L1^ENSG00000006453.14" ; ID "TECPR1--BAIAP2L1^BAIAP2L1^ENSG00000006453.14" ; ccdsid "CCDS34687.1" ; exon_id "ENSE00003618813.2" ; exon_number 1 ; gene_id "TECPR1--BAIAP2L1^BAIAP2L1^ENSG00000006453.14" ; gene_name BAIAP2L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165117.2" ; havana_transcript "OTTHUMT00000334681.2" ; hgnc_id "HGNC:21649" ; level 2 ; orig_coord_info "chr7,98400802,98400852,-" ; protein_id "ENSP00000005260.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TECPR1--BAIAP2L1^ENST00000005260.9" ; transcript_name "BAIAP2L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TECPR1--BAIAP2L1 HAVANA mRNA 28752 45758 . + . FI_gene_label "BAIAP2L1^ENSG00000006453.14" ; ID "TECPR1--BAIAP2L1^ENST00000005260.9" ; Parent "TECPR1--BAIAP2L1^BAIAP2L1^ENSG00000006453.14" ; ccdsid "CCDS34687.1" ; exon_id "ENSE00003618813.2" ; exon_number 1 ; gene_id "TECPR1--BAIAP2L1^BAIAP2L1^ENSG00000006453.14" ; gene_name BAIAP2L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165117.2" ; havana_transcript "OTTHUMT00000334681.2" ; hgnc_id "HGNC:21649" ; level 2 ; orig_coord_info "chr7,98400802,98400852,-" ; protein_id "ENSP00000005260.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TECPR1--BAIAP2L1^ENST00000005260.9" ; transcript_name "BAIAP2L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TECPR1--BAIAP2L1 HAVANA gene 1027 4450 . + . FI_gene_label "TECPR1^ENSG00000205356.10" ; ID "TECPR1--BAIAP2L1^TECPR1^ENSG00000205356.10" ; exon_id "ENSE00001482540.1" ; exon_number 3 ; gene_id "TECPR1--BAIAP2L1^TECPR1^ENSG00000205356.10" ; gene_name TECPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154273.7" ; havana_transcript "OTTHUMT00000334736.2" ; hgnc_id "HGNC:22214" ; level 2 ; orig_coord_info "chr7,98245922,98246146,-" ; protein_id "ENSP00000412675.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "TECPR1--BAIAP2L1^ENST00000415086.5" ; transcript_name "TECPR1-201" ; transcript_support_level 4 ; transcript_type protein_coding
TECPR1--BAIAP2L1 HAVANA mRNA 1027 4450 . + . FI_gene_label "TECPR1^ENSG00000205356.10" ; ID "TECPR1--BAIAP2L1^ENST00000415086.5" ; Parent "TECPR1--BAIAP2L1^TECPR1^ENSG00000205356.10" ; exon_id "ENSE00001482540.1" ; exon_number 3 ; gene_id "TECPR1--BAIAP2L1^TECPR1^ENSG00000205356.10" ; gene_name TECPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154273.7" ; havana_transcript "OTTHUMT00000334736.2" ; hgnc_id "HGNC:22214" ; level 2 ; orig_coord_info "chr7,98245922,98246146,-" ; protein_id "ENSP00000412675.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "TECPR1--BAIAP2L1^ENST00000415086.5" ; transcript_name "TECPR1-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TECPR1--PPIAP82 HAVANA gene 1027 4450 . + . FI_gene_label "TECPR1^ENSG00000205356.10" ; ID "TECPR1--PPIAP82^TECPR1^ENSG00000205356.10" ; exon_id "ENSE00001482540.1" ; exon_number 3 ; gene_id "TECPR1--PPIAP82^TECPR1^ENSG00000205356.10" ; gene_name TECPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154273.7" ; havana_transcript "OTTHUMT00000334736.2" ; hgnc_id "HGNC:22214" ; level 2 ; orig_coord_info "chr7,98245922,98246146,-" ; protein_id "ENSP00000412675.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "TECPR1--PPIAP82^ENST00000415086.5" ; transcript_name "TECPR1-201" ; transcript_support_level 4 ; transcript_type protein_coding
TECPR1--PPIAP82 HAVANA mRNA 1027 4450 . + . FI_gene_label "TECPR1^ENSG00000205356.10" ; ID "TECPR1--PPIAP82^ENST00000415086.5" ; Parent "TECPR1--PPIAP82^TECPR1^ENSG00000205356.10" ; exon_id "ENSE00001482540.1" ; exon_number 3 ; gene_id "TECPR1--PPIAP82^TECPR1^ENSG00000205356.10" ; gene_name TECPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154273.7" ; havana_transcript "OTTHUMT00000334736.2" ; hgnc_id "HGNC:22214" ; level 2 ; orig_coord_info "chr7,98245922,98246146,-" ; protein_id "ENSP00000412675.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "TECPR1--PPIAP82^ENST00000415086.5" ; transcript_name "TECPR1-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--ANKRD29 HAVANA gene 29994 44512 . + . FI_gene_label "ANKRD29^ENSG00000154065.17" ; ID "TMEM241--ANKRD29^ANKRD29^ENSG00000154065.17" ; ccdsid "CCDS77164.1" ; exon_id "ENSE00002951634.1" ; exon_number 1 ; gene_id "TMEM241--ANKRD29^ANKRD29^ENSG00000154065.17" ; gene_name ANKRD29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131875.6" ; havana_transcript "OTTHUMT00000445527.1" ; hgnc_id "HGNC:27110" ; level 2 ; orig_coord_info "chr18,23662710,23662730,-" ; protein_id "ENSP00000323387.9" ; tag basic CCDS ; transcript_id "TMEM241--ANKRD29^ENST00000322980.13" ; transcript_name "ANKRD29-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMEM241--ANKRD29 HAVANA mRNA 29994 44512 . + . FI_gene_label "ANKRD29^ENSG00000154065.17" ; ID "TMEM241--ANKRD29^ENST00000322980.13" ; Parent "TMEM241--ANKRD29^ANKRD29^ENSG00000154065.17" ; ccdsid "CCDS77164.1" ; exon_id "ENSE00002951634.1" ; exon_number 1 ; gene_id "TMEM241--ANKRD29^ANKRD29^ENSG00000154065.17" ; gene_name ANKRD29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131875.6" ; havana_transcript "OTTHUMT00000445527.1" ; hgnc_id "HGNC:27110" ; level 2 ; orig_coord_info "chr18,23662710,23662730,-" ; protein_id "ENSP00000323387.9" ; tag basic CCDS ; transcript_id "TMEM241--ANKRD29^ENST00000322980.13" ; transcript_name "ANKRD29-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--ANKRD29 HAVANA gene 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--ANKRD29^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--ANKRD29^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--ANKRD29^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM241--ANKRD29 HAVANA mRNA 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--ANKRD29^ENST00000383233.8" ; Parent "TMEM241--ANKRD29^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--ANKRD29^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--ANKRD29^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--NPC1 HAVANA gene 29898 55770 . + . FI_gene_label "NPC1^ENSG00000141458.13" ; ID "TMEM241--NPC1^NPC1^ENSG00000141458.13" ; ccdsid "CCDS11878.1" ; exon_id "ENSE00001838887.4" ; exon_number 1 ; gene_id "TMEM241--NPC1^NPC1^ENSG00000141458.13" ; gene_name NPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131873.10" ; havana_transcript "OTTHUMT00000254823.3" ; hgnc_id "HGNC:7897" ; level 2 ; orig_coord_info "chr18,23586287,23586343,-" ; protein_id "ENSP00000269228.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--NPC1^ENST00000269228.10" ; transcript_name "NPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM241--NPC1 HAVANA mRNA 29898 55770 . + . FI_gene_label "NPC1^ENSG00000141458.13" ; ID "TMEM241--NPC1^ENST00000269228.10" ; Parent "TMEM241--NPC1^NPC1^ENSG00000141458.13" ; ccdsid "CCDS11878.1" ; exon_id "ENSE00001838887.4" ; exon_number 1 ; gene_id "TMEM241--NPC1^NPC1^ENSG00000141458.13" ; gene_name NPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131873.10" ; havana_transcript "OTTHUMT00000254823.3" ; hgnc_id "HGNC:7897" ; level 2 ; orig_coord_info "chr18,23586287,23586343,-" ; protein_id "ENSP00000269228.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--NPC1^ENST00000269228.10" ; transcript_name "NPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--NPC1 HAVANA gene 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--NPC1^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--NPC1^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--NPC1^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM241--NPC1 HAVANA mRNA 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--NPC1^ENST00000383233.8" ; Parent "TMEM241--NPC1^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--NPC1^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--NPC1^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSPAN18--AP001836.1 ENSEMBL gene 2824 17887 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "TSPAN18--AP001836.1^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "TSPAN18--AP001836.1^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TSPAN18--AP001836.1^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
TSPAN18--AP001836.1 ENSEMBL mRNA 2824 17887 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "TSPAN18--AP001836.1^ENST00000340160.7" ; Parent "TSPAN18--AP001836.1^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "TSPAN18--AP001836.1^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TSPAN18--AP001836.1^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TSPAN18--MED28P5 ENSEMBL gene 2824 17887 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "TSPAN18--MED28P5^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "TSPAN18--MED28P5^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TSPAN18--MED28P5^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
TSPAN18--MED28P5 ENSEMBL mRNA 2824 17887 . + . FI_gene_label "TSPAN18^ENSG00000157570.12" ; ID "TSPAN18--MED28P5^ENST00000340160.7" ; Parent "TSPAN18--MED28P5^TSPAN18^ENSG00000157570.12" ; ccdsid "CCDS7910.1" ; exon_id "ENSE00003613540.1" ; exon_number 3 ; gene_id "TSPAN18--MED28P5^TSPAN18^ENSG00000157570.12" ; gene_name TSPAN18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163883.5" ; hgnc_id "HGNC:20660" ; level 3 ; orig_coord_info "chr11,44906417,44906479,+" ; protein_id "ENSP00000339820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TSPAN18--MED28P5^ENST00000340160.7" ; transcript_name "TSPAN18-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP50--TRPM7 HAVANA gene 5637 9649 . + . FI_gene_label "USP50^ENSG00000170236.16" ; ID "USP50--TRPM7^USP50^ENSG00000170236.16" ; exon_id "ENSE00003556488.1" ; exon_number 1 ; gene_id "USP50--TRPM7^USP50^ENSG00000170236.16" ; gene_name USP50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167591.5" ; havana_transcript "OTTHUMT00000395273.2" ; hgnc_id "HGNC:20079" ; level 2 ; orig_coord_info "chr15,50538709,50538851,-" ; protein_id "ENSP00000434014.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--TRPM7^ENST00000529349.2" ; transcript_name "USP50-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
USP50--TRPM7 HAVANA mRNA 5637 9649 . + . FI_gene_label "USP50^ENSG00000170236.16" ; ID "USP50--TRPM7^ENST00000529349.2" ; Parent "USP50--TRPM7^USP50^ENSG00000170236.16" ; exon_id "ENSE00003556488.1" ; exon_number 1 ; gene_id "USP50--TRPM7^USP50^ENSG00000170236.16" ; gene_name USP50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167591.5" ; havana_transcript "OTTHUMT00000395273.2" ; hgnc_id "HGNC:20079" ; level 2 ; orig_coord_info "chr15,50538709,50538851,-" ; protein_id "ENSP00000434014.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--TRPM7^ENST00000529349.2" ; transcript_name "USP50-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
USP50--TRPM7 HAVANA gene 31917 41673 . + . FI_gene_label "TRPM7^ENSG00000092439.16" ; ID "USP50--TRPM7^TRPM7^ENSG00000092439.16" ; exon_id "ENSE00002541088.1" ; exon_number 1 ; gene_id "USP50--TRPM7^TRPM7^ENSG00000092439.16" ; gene_name TRPM7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172449.3" ; havana_transcript "OTTHUMT00000418611.1" ; hgnc_id "HGNC:17994" ; level 2 ; orig_coord_info "chr15,50624166,50624216,-" ; protein_id "ENSP00000452873.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--TRPM7^ENST00000560638.1" ; transcript_name "TRPM7-204" ; transcript_support_level 1 ; transcript_type protein_coding
USP50--TRPM7 HAVANA mRNA 31917 41673 . + . FI_gene_label "TRPM7^ENSG00000092439.16" ; ID "USP50--TRPM7^ENST00000560638.1" ; Parent "USP50--TRPM7^TRPM7^ENSG00000092439.16" ; exon_id "ENSE00002541088.1" ; exon_number 1 ; gene_id "USP50--TRPM7^TRPM7^ENSG00000092439.16" ; gene_name TRPM7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172449.3" ; havana_transcript "OTTHUMT00000418611.1" ; hgnc_id "HGNC:17994" ; level 2 ; orig_coord_info "chr15,50624166,50624216,-" ; protein_id "ENSP00000452873.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--TRPM7^ENST00000560638.1" ; transcript_name "TRPM7-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UTRN--STX11 HAVANA gene 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--STX11^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--STX11^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--STX11^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
UTRN--STX11 HAVANA mRNA 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--STX11^ENST00000367524.7" ; Parent "UTRN--STX11^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--STX11^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--STX11^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
UTRN--STX11 HAVANA gene 92351 98854 . + . FI_gene_label "STX11^ENSG00000135604.10" ; ID "UTRN--STX11^STX11^ENSG00000135604.10" ; ccdsid "CCDS5205.1" ; exon_id "ENSE00001944657.2" ; exon_number 2 ; gene_id "UTRN--STX11^STX11^ENSG00000135604.10" ; gene_name STX11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015739.2" ; havana_transcript "OTTHUMT00000042544.2" ; hgnc_id "HGNC:11429" ; level 2 ; orig_coord_info "chr6,144186628,144187488,+" ; protein_id "ENSP00000356540.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UTRN--STX11^ENST00000367568.5" ; transcript_name "STX11-201" ; transcript_support_level 1 ; transcript_type protein_coding
UTRN--STX11 HAVANA mRNA 92351 98854 . + . FI_gene_label "STX11^ENSG00000135604.10" ; ID "UTRN--STX11^ENST00000367568.5" ; Parent "UTRN--STX11^STX11^ENSG00000135604.10" ; ccdsid "CCDS5205.1" ; exon_id "ENSE00001944657.2" ; exon_number 2 ; gene_id "UTRN--STX11^STX11^ENSG00000135604.10" ; gene_name STX11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015739.2" ; havana_transcript "OTTHUMT00000042544.2" ; hgnc_id "HGNC:11429" ; level 2 ; orig_coord_info "chr6,144186628,144187488,+" ; protein_id "ENSP00000356540.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UTRN--STX11^ENST00000367568.5" ; transcript_name "STX11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VOPP1--FKBP9P1 HAVANA gene 1487 20610 . + . FI_gene_label "VOPP1^ENSG00000154978.13" ; ID "VOPP1--FKBP9P1^VOPP1^ENSG00000154978.13" ; ccdsid "CCDS47588.1" ; exon_id "ENSE00001122599.5" ; exon_number 1 ; gene_id "VOPP1--FKBP9P1^VOPP1^ENSG00000154978.13" ; gene_name VOPP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156124.5" ; havana_transcript "OTTHUMT00000343074.2" ; hgnc_id "HGNC:34518" ; level 2 ; orig_coord_info "chr7,55572271,55572324,-" ; protein_id "ENSP00000285279.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "VOPP1--FKBP9P1^ENST00000285279.10" ; transcript_name "VOPP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VOPP1--FKBP9P1 HAVANA mRNA 1487 20610 . + . FI_gene_label "VOPP1^ENSG00000154978.13" ; ID "VOPP1--FKBP9P1^ENST00000285279.10" ; Parent "VOPP1--FKBP9P1^VOPP1^ENSG00000154978.13" ; ccdsid "CCDS47588.1" ; exon_id "ENSE00001122599.5" ; exon_number 1 ; gene_id "VOPP1--FKBP9P1^VOPP1^ENSG00000154978.13" ; gene_name VOPP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156124.5" ; havana_transcript "OTTHUMT00000343074.2" ; hgnc_id "HGNC:34518" ; level 2 ; orig_coord_info "chr7,55572271,55572324,-" ; protein_id "ENSP00000285279.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "VOPP1--FKBP9P1^ENST00000285279.10" ; transcript_name "VOPP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABL2--CYCSP53 HAVANA gene 31360 31624 . + . FI_gene_label "CYCSP53^ENSG00000234333.2" ; ID "ABL2--CYCSP53^CYCSP53^ENSG00000234333.2" ; exon_id "ENSE00001610837.2" ; exon_number 1 ; gene_id "ABL2--CYCSP53^CYCSP53^ENSG00000234333.2" ; gene_name CYCSP53 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000057643.2" ; havana_transcript "OTTHUMT00000128047.2" ; hgnc_id "HGNC:24404" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,171444699,171444963,-" ; tag pseudo_consens basic ; transcript_id "ABL2--CYCSP53^ENST00000455540.2" ; transcript_name "CYCSP53-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ABL2--CYCSP53 HAVANA RNA 31360 31624 . + . FI_gene_label "CYCSP53^ENSG00000234333.2" ; ID "ABL2--CYCSP53^ENST00000455540.2" ; Parent "ABL2--CYCSP53^CYCSP53^ENSG00000234333.2" ; exon_id "ENSE00001610837.2" ; exon_number 1 ; gene_id "ABL2--CYCSP53^CYCSP53^ENSG00000234333.2" ; gene_name CYCSP53 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000057643.2" ; havana_transcript "OTTHUMT00000128047.2" ; hgnc_id "HGNC:24404" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,171444699,171444963,-" ; tag pseudo_consens basic ; transcript_id "ABL2--CYCSP53^ENST00000455540.2" ; transcript_name "CYCSP53-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
BAD--AC024405.1 HAVANA gene 9559 15456 . + . FI_gene_label "AC024405.1^ENSG00000214883.4" ; ID "BAD--AC024405.1^AC024405.1^ENSG00000214883.4" ; exon_id "ENSE00002189224.2" ; exon_number 1 ; gene_id "BAD--AC024405.1^AC024405.1^ENSG00000214883.4" ; gene_name "AC024405.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166694.3" ; havana_transcript "OTTHUMT00000391123.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,50409042,50409188,+" ; tag basic ; transcript_id "BAD--AC024405.1^ENST00000532521.2" ; transcript_name "AC024405.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BAD--AC024405.1 HAVANA RNA 9559 15456 . + . FI_gene_label "AC024405.1^ENSG00000214883.4" ; ID "BAD--AC024405.1^ENST00000532521.2" ; Parent "BAD--AC024405.1^AC024405.1^ENSG00000214883.4" ; exon_id "ENSE00002189224.2" ; exon_number 1 ; gene_id "BAD--AC024405.1^AC024405.1^ENSG00000214883.4" ; gene_name "AC024405.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166694.3" ; havana_transcript "OTTHUMT00000391123.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,50409042,50409188,+" ; tag basic ; transcript_id "BAD--AC024405.1^ENST00000532521.2" ; transcript_name "AC024405.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BAD--OR4C50P HAVANA gene 9559 10488 . + . FI_gene_label "OR4C50P^ENSG00000237610.1" ; ID "BAD--OR4C50P^OR4C50P^ENSG00000237610.1" ; exon_id "ENSE00001684660.1" ; exon_number 1 ; gene_id "BAD--OR4C50P^OR4C50P^ENSG00000237610.1" ; gene_name OR4C50P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154323.1" ; havana_transcript "OTTHUMT00000334836.1" ; hgnc_id "HGNC:31274" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,54591480,54592409,+" ; tag basic ; transcript_id "BAD--OR4C50P^ENST00000330155.3" ; transcript_name "OR4C50P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BAD--OR4C50P HAVANA RNA 9559 10488 . + . FI_gene_label "OR4C50P^ENSG00000237610.1" ; ID "BAD--OR4C50P^ENST00000330155.3" ; Parent "BAD--OR4C50P^OR4C50P^ENSG00000237610.1" ; exon_id "ENSE00001684660.1" ; exon_number 1 ; gene_id "BAD--OR4C50P^OR4C50P^ENSG00000237610.1" ; gene_name OR4C50P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154323.1" ; havana_transcript "OTTHUMT00000334836.1" ; hgnc_id "HGNC:31274" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,54591480,54592409,+" ; tag basic ; transcript_id "BAD--OR4C50P^ENST00000330155.3" ; transcript_name "OR4C50P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
CEP89--AKR1B1P7 HAVANA gene 31483 32434 . + . FI_gene_label "AKR1B1P7^ENSG00000266899.2" ; ID "CEP89--AKR1B1P7^AKR1B1P7^ENSG00000266899.2" ; exon_id "ENSE00002835264.2" ; exon_number 1 ; gene_id "CEP89--AKR1B1P7^AKR1B1P7^ENSG00000266899.2" ; gene_name AKR1B1P7 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000182176.2" ; havana_transcript "OTTHUMT00000459851.2" ; hgnc_id "HGNC:33497" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,33360497,33361448,-" ; tag pseudo_consens basic ; transcript_id "CEP89--AKR1B1P7^ENST00000587229.2" ; transcript_name "AKR1B1P7-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CEP89--AKR1B1P7 HAVANA RNA 31483 32434 . + . FI_gene_label "AKR1B1P7^ENSG00000266899.2" ; ID "CEP89--AKR1B1P7^ENST00000587229.2" ; Parent "CEP89--AKR1B1P7^AKR1B1P7^ENSG00000266899.2" ; exon_id "ENSE00002835264.2" ; exon_number 1 ; gene_id "CEP89--AKR1B1P7^AKR1B1P7^ENSG00000266899.2" ; gene_name AKR1B1P7 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000182176.2" ; havana_transcript "OTTHUMT00000459851.2" ; hgnc_id "HGNC:33497" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,33360497,33361448,-" ; tag pseudo_consens basic ; transcript_id "CEP89--AKR1B1P7^ENST00000587229.2" ; transcript_name "AKR1B1P7-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CEP89--RPS3AP50 HAVANA gene 31483 32781 . + . FI_gene_label "RPS3AP50^ENSG00000243864.1" ; ID "CEP89--RPS3AP50^RPS3AP50^ENSG00000243864.1" ; exon_id "ENSE00001928336.1" ; exon_number 1 ; gene_id "CEP89--RPS3AP50^RPS3AP50^ENSG00000243864.1" ; gene_name RPS3AP50 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158153.2" ; havana_transcript "OTTHUMT00000350299.1" ; hgnc_id "HGNC:37018" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,33340686,33340763,+" ; tag pseudo_consens basic ; transcript_id "CEP89--RPS3AP50^ENST00000487064.1" ; transcript_name "RPS3AP50-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CEP89--RPS3AP50 HAVANA RNA 31483 32781 . + . FI_gene_label "RPS3AP50^ENSG00000243864.1" ; ID "CEP89--RPS3AP50^ENST00000487064.1" ; Parent "CEP89--RPS3AP50^RPS3AP50^ENSG00000243864.1" ; exon_id "ENSE00001928336.1" ; exon_number 1 ; gene_id "CEP89--RPS3AP50^RPS3AP50^ENSG00000243864.1" ; gene_name RPS3AP50 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158153.2" ; havana_transcript "OTTHUMT00000350299.1" ; hgnc_id "HGNC:37018" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,33340686,33340763,+" ; tag pseudo_consens basic ; transcript_id "CEP89--RPS3AP50^ENST00000487064.1" ; transcript_name "RPS3AP50-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
COQ6--MLXP1 HAVANA gene 14970 15687 . + . FI_gene_label "MLXP1^ENSG00000226539.1" ; ID "COQ6--MLXP1^MLXP1^ENSG00000226539.1" ; exon_id "ENSE00001733814.1" ; exon_number 1 ; gene_id "COQ6--MLXP1^MLXP1^ENSG00000226539.1" ; gene_name MLXP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153371.1" ; havana_transcript "OTTHUMT00000330923.1" ; hgnc_id "HGNC:54600" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,223704621,223705338,+" ; tag pseudo_consens basic ; transcript_id "COQ6--MLXP1^ENST00000446594.1" ; transcript_name "MLXP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
COQ6--MLXP1 HAVANA RNA 14970 15687 . + . FI_gene_label "MLXP1^ENSG00000226539.1" ; ID "COQ6--MLXP1^ENST00000446594.1" ; Parent "COQ6--MLXP1^MLXP1^ENSG00000226539.1" ; exon_id "ENSE00001733814.1" ; exon_number 1 ; gene_id "COQ6--MLXP1^MLXP1^ENSG00000226539.1" ; gene_name MLXP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153371.1" ; havana_transcript "OTTHUMT00000330923.1" ; hgnc_id "HGNC:54600" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,223704621,223705338,+" ; tag pseudo_consens basic ; transcript_id "COQ6--MLXP1^ENST00000446594.1" ; transcript_name "MLXP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DHX9--LINC01720 HAVANA gene 29499 35714 . + . FI_gene_label "LINC01720^ENSG00000231175.1" ; ID "DHX9--LINC01720^LINC01720^ENSG00000231175.1" ; exon_id "ENSE00001777951.1" ; exon_number 1 ; gene_id "DHX9--LINC01720^LINC01720^ENSG00000231175.1" ; gene_name LINC01720 ; gene_type lncRNA ; havana_gene "OTTHUMG00000035556.1" ; havana_transcript "OTTHUMT00000086305.1" ; hgnc_id "HGNC:52507" ; level 2 ; orig_coord_info "chr1,190624890,190625033,+" ; tag basic ; transcript_id "DHX9--LINC01720^ENST00000413356.1" ; transcript_name "LINC01720-201" ; transcript_support_level 1 ; transcript_type lncRNA
DHX9--LINC01720 HAVANA RNA 29499 35714 . + . FI_gene_label "LINC01720^ENSG00000231175.1" ; ID "DHX9--LINC01720^ENST00000413356.1" ; Parent "DHX9--LINC01720^LINC01720^ENSG00000231175.1" ; exon_id "ENSE00001777951.1" ; exon_number 1 ; gene_id "DHX9--LINC01720^LINC01720^ENSG00000231175.1" ; gene_name LINC01720 ; gene_type lncRNA ; havana_gene "OTTHUMG00000035556.1" ; havana_transcript "OTTHUMT00000086305.1" ; hgnc_id "HGNC:52507" ; level 2 ; orig_coord_info "chr1,190624890,190625033,+" ; tag basic ; transcript_id "DHX9--LINC01720^ENST00000413356.1" ; transcript_name "LINC01720-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
MED21--AC023051.1 HAVANA gene 14342 17217 . + . FI_gene_label "AC023051.1^ENSG00000234428.2" ; ID "MED21--AC023051.1^AC023051.1^ENSG00000234428.2" ; exon_id "ENSE00002258406.1" ; exon_number 1 ; gene_id "MED21--AC023051.1^AC023051.1^ENSG00000234428.2" ; gene_name "AC023051.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169229.1" ; havana_transcript "OTTHUMT00000402958.1" ; level 2 ; orig_coord_info "chr12,26623369,26623402,+" ; tag basic ; transcript_id "MED21--AC023051.1^ENST00000414098.2" ; transcript_name "AC023051.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
MED21--AC023051.1 HAVANA RNA 14342 17217 . + . FI_gene_label "AC023051.1^ENSG00000234428.2" ; ID "MED21--AC023051.1^ENST00000414098.2" ; Parent "MED21--AC023051.1^AC023051.1^ENSG00000234428.2" ; exon_id "ENSE00002258406.1" ; exon_number 1 ; gene_id "MED21--AC023051.1^AC023051.1^ENSG00000234428.2" ; gene_name "AC023051.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169229.1" ; havana_transcript "OTTHUMT00000402958.1" ; level 2 ; orig_coord_info "chr12,26623369,26623402,+" ; tag basic ; transcript_id "MED21--AC023051.1^ENST00000414098.2" ; transcript_name "AC023051.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
MRPS14--LINC01724 HAVANA gene 10171 14264 . + . FI_gene_label "LINC01724^ENSG00000227421.2" ; ID "MRPS14--LINC01724^LINC01724^ENSG00000227421.2" ; exon_id "ENSE00003856660.1" ; exon_number 1 ; gene_id "MRPS14--LINC01724^LINC01724^ENSG00000227421.2" ; gene_name LINC01724 ; gene_type lncRNA ; havana_gene "OTTHUMG00000035609.2" ; havana_transcript "OTTHUMT00000086414.2" ; hgnc_id "HGNC:52512" ; level 1 ; orig_coord_info "chr1,196065102,196065235,-" ; tag basic TAGENE exp_conf ; transcript_id "MRPS14--LINC01724^ENST00000430519.2" ; transcript_name "LINC01724-201" ; transcript_support_level 3 ; transcript_type lncRNA
MRPS14--LINC01724 HAVANA RNA 10171 14264 . + . FI_gene_label "LINC01724^ENSG00000227421.2" ; ID "MRPS14--LINC01724^ENST00000430519.2" ; Parent "MRPS14--LINC01724^LINC01724^ENSG00000227421.2" ; exon_id "ENSE00003856660.1" ; exon_number 1 ; gene_id "MRPS14--LINC01724^LINC01724^ENSG00000227421.2" ; gene_name LINC01724 ; gene_type lncRNA ; havana_gene "OTTHUMG00000035609.2" ; havana_transcript "OTTHUMT00000086414.2" ; hgnc_id "HGNC:52512" ; level 1 ; orig_coord_info "chr1,196065102,196065235,-" ; tag basic TAGENE exp_conf ; transcript_id "MRPS14--LINC01724^ENST00000430519.2" ; transcript_name "LINC01724-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PMS2P8--CCDC146 HAVANA gene 1001 5891 . + . FI_gene_label "PMS2P8^ENSG00000273897.1" ; ID "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; exon_id "ENSE00002487863.2" ; exon_number 1 ; gene_id "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; gene_name PMS2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188239.1" ; havana_transcript "OTTHUMT00000476736.1" ; hgnc_id "HGNC:33516" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73037371,73037525,+" ; tag basic ; transcript_id "PMS2P8--CCDC146^ENST00000380410.6" ; transcript_name "PMS2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P8--CCDC146 HAVANA RNA 1001 5891 . + . FI_gene_label "PMS2P8^ENSG00000273897.1" ; ID "PMS2P8--CCDC146^ENST00000380410.6" ; Parent "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; exon_id "ENSE00002487863.2" ; exon_number 1 ; gene_id "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; gene_name PMS2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188239.1" ; havana_transcript "OTTHUMT00000476736.1" ; hgnc_id "HGNC:33516" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73037371,73037525,+" ; tag basic ; transcript_id "PMS2P8--CCDC146^ENST00000380410.6" ; transcript_name "PMS2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RBM39--LINC01393 HAVANA gene 32021 37131 . + . FI_gene_label "LINC01393^ENSG00000225535.7" ; ID "RBM39--LINC01393^LINC01393^ENSG00000225535.7" ; exon_id "ENSE00001636242.1" ; exon_number 1 ; gene_id "RBM39--LINC01393^LINC01393^ENSG00000225535.7" ; gene_name LINC01393 ; gene_type lncRNA ; havana_gene "OTTHUMG00000065346.7" ; havana_transcript "OTTHUMT00000140192.2" ; hgnc_id "HGNC:50669" ; level 2 ; orig_coord_info "chr7,115078998,115079109,+" ; transcript_id "RBM39--LINC01393^ENST00000419905.5" ; transcript_name "LINC01393-201" ; transcript_support_level 2 ; transcript_type lncRNA
RBM39--LINC01393 HAVANA RNA 32021 37131 . + . FI_gene_label "LINC01393^ENSG00000225535.7" ; ID "RBM39--LINC01393^ENST00000419905.5" ; Parent "RBM39--LINC01393^LINC01393^ENSG00000225535.7" ; exon_id "ENSE00001636242.1" ; exon_number 1 ; gene_id "RBM39--LINC01393^LINC01393^ENSG00000225535.7" ; gene_name LINC01393 ; gene_type lncRNA ; havana_gene "OTTHUMG00000065346.7" ; havana_transcript "OTTHUMT00000140192.2" ; hgnc_id "HGNC:50669" ; level 2 ; orig_coord_info "chr7,115078998,115079109,+" ; transcript_id "RBM39--LINC01393^ENST00000419905.5" ; transcript_name "LINC01393-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
STARD13--AL139383.1 HAVANA gene 43979 46333 . + . FI_gene_label "AL139383.1^ENSG00000230490.3" ; ID "STARD13--AL139383.1^AL139383.1^ENSG00000230490.3" ; exon_id "ENSE00001757467.1" ; exon_number 1 ; gene_id "STARD13--AL139383.1^AL139383.1^ENSG00000230490.3" ; gene_name "AL139383.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000016714.6" ; havana_transcript "OTTHUMT00000044449.1" ; level 2 ; orig_coord_info "chr13,33524238,33524322,-" ; tag basic ; transcript_id "STARD13--AL139383.1^ENST00000437698.1" ; transcript_name "AL139383.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
STARD13--AL139383.1 HAVANA RNA 43979 46333 . + . FI_gene_label "AL139383.1^ENSG00000230490.3" ; ID "STARD13--AL139383.1^ENST00000437698.1" ; Parent "STARD13--AL139383.1^AL139383.1^ENSG00000230490.3" ; exon_id "ENSE00001757467.1" ; exon_number 1 ; gene_id "STARD13--AL139383.1^AL139383.1^ENSG00000230490.3" ; gene_name "AL139383.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000016714.6" ; havana_transcript "OTTHUMT00000044449.1" ; level 2 ; orig_coord_info "chr13,33524238,33524322,-" ; tag basic ; transcript_id "STARD13--AL139383.1^ENST00000437698.1" ; transcript_name "AL139383.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TECPR1--PPIAP82 HAVANA gene 28752 29250 . + . FI_gene_label "PPIAP82^ENSG00000213455.3" ; ID "TECPR1--PPIAP82^PPIAP82^ENSG00000213455.3" ; exon_id "ENSE00001672037.1" ; exon_number 1 ; gene_id "TECPR1--PPIAP82^PPIAP82^ENSG00000213455.3" ; gene_name PPIAP82 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154288.1" ; havana_transcript "OTTHUMT00000334699.1" ; hgnc_id "HGNC:53706" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,98454119,98454617,-" ; tag pseudo_consens basic ; transcript_id "TECPR1--PPIAP82^ENST00000452411.1" ; transcript_name "PPIAP82-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TECPR1--PPIAP82 HAVANA RNA 28752 29250 . + . FI_gene_label "PPIAP82^ENSG00000213455.3" ; ID "TECPR1--PPIAP82^ENST00000452411.1" ; Parent "TECPR1--PPIAP82^PPIAP82^ENSG00000213455.3" ; exon_id "ENSE00001672037.1" ; exon_number 1 ; gene_id "TECPR1--PPIAP82^PPIAP82^ENSG00000213455.3" ; gene_name PPIAP82 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154288.1" ; havana_transcript "OTTHUMT00000334699.1" ; hgnc_id "HGNC:53706" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,98454119,98454617,-" ; tag pseudo_consens basic ; transcript_id "TECPR1--PPIAP82^ENST00000452411.1" ; transcript_name "PPIAP82-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TSPAN18--AP001836.1 HAVANA gene 20890 21412 . + . FI_gene_label "AP001836.1^ENSG00000270753.1" ; ID "TSPAN18--AP001836.1^AP001836.1^ENSG00000270753.1" ; exon_id "ENSE00003569316.1" ; exon_number 1 ; gene_id "TSPAN18--AP001836.1^AP001836.1^ENSG00000270753.1" ; gene_name "AP001836.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184799.1" ; havana_transcript "OTTHUMT00000469210.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,97086160,97086682,-" ; tag pseudo_consens basic ; transcript_id "TSPAN18--AP001836.1^ENST00000604675.1" ; transcript_name "AP001836.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TSPAN18--AP001836.1 HAVANA RNA 20890 21412 . + . FI_gene_label "AP001836.1^ENSG00000270753.1" ; ID "TSPAN18--AP001836.1^ENST00000604675.1" ; Parent "TSPAN18--AP001836.1^AP001836.1^ENSG00000270753.1" ; exon_id "ENSE00003569316.1" ; exon_number 1 ; gene_id "TSPAN18--AP001836.1^AP001836.1^ENSG00000270753.1" ; gene_name "AP001836.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184799.1" ; havana_transcript "OTTHUMT00000469210.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,97086160,97086682,-" ; tag pseudo_consens basic ; transcript_id "TSPAN18--AP001836.1^ENST00000604675.1" ; transcript_name "AP001836.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TSPAN18--MED28P5 HAVANA gene 20890 21327 . + . FI_gene_label "MED28P5^ENSG00000255205.1" ; ID "TSPAN18--MED28P5^MED28P5^ENSG00000255205.1" ; exon_id "ENSE00002163385.1" ; exon_number 1 ; gene_id "TSPAN18--MED28P5^MED28P5^ENSG00000255205.1" ; gene_name MED28P5 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000167667.1" ; havana_transcript "OTTHUMT00000395476.1" ; hgnc_id "HGNC:45082" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,97000274,97000711,-" ; tag pseudo_consens basic ; transcript_id "TSPAN18--MED28P5^ENST00000528254.1" ; transcript_name "MED28P5-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TSPAN18--MED28P5 HAVANA RNA 20890 21327 . + . FI_gene_label "MED28P5^ENSG00000255205.1" ; ID "TSPAN18--MED28P5^ENST00000528254.1" ; Parent "TSPAN18--MED28P5^MED28P5^ENSG00000255205.1" ; exon_id "ENSE00002163385.1" ; exon_number 1 ; gene_id "TSPAN18--MED28P5^MED28P5^ENSG00000255205.1" ; gene_name MED28P5 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000167667.1" ; havana_transcript "OTTHUMT00000395476.1" ; hgnc_id "HGNC:45082" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,97000274,97000711,-" ; tag pseudo_consens basic ; transcript_id "TSPAN18--MED28P5^ENST00000528254.1" ; transcript_name "MED28P5-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
VOPP1--FKBP9P1 HAVANA gene 24730 35003 . + . FI_gene_label "FKBP9P1^ENSG00000176826.15" ; ID "VOPP1--FKBP9P1^FKBP9P1^ENSG00000176826.15" ; exon_id "ENSE00001796324.1" ; exon_number 1 ; gene_id "VOPP1--FKBP9P1^FKBP9P1^ENSG00000176826.15" ; gene_name FKBP9P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000097835.3" ; havana_transcript "OTTHUMT00000082328.1" ; hgnc_id "HGNC:23568" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,55713105,55713252,-" ; tag basic ; transcript_id "VOPP1--FKBP9P1^ENST00000441699.1" ; transcript_name "FKBP9P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
VOPP1--FKBP9P1 HAVANA RNA 24730 35003 . + . FI_gene_label "FKBP9P1^ENSG00000176826.15" ; ID "VOPP1--FKBP9P1^ENST00000441699.1" ; Parent "VOPP1--FKBP9P1^FKBP9P1^ENSG00000176826.15" ; exon_id "ENSE00001796324.1" ; exon_number 1 ; gene_id "VOPP1--FKBP9P1^FKBP9P1^ENSG00000176826.15" ; gene_name FKBP9P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000097835.3" ; havana_transcript "OTTHUMT00000082328.1" ; hgnc_id "HGNC:23568" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,55713105,55713252,-" ; tag basic ; transcript_id "VOPP1--FKBP9P1^ENST00000441699.1" ; transcript_name "FKBP9P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
1007 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1948 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 76 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed