File Info

Filename
aih-tih-sc-318819-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/20604090c1a85aa8b4b8a202968199/aih-tih-sc-318819-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:34:24
                             Started mapping on |	Jun 08 07:36:27
                                    Finished on |	Jun 08 08:17:05
       Mapping speed, Million of reads per hour |	376.25

                          Number of input reads |	254805325
                      Average input read length |	219
                                    UNIQUE READS:
                   Uniquely mapped reads number |	239493517
                        Uniquely mapped reads % |	93.99%
                          Average mapped length |	218.62
                       Number of splices: Total |	213559987
            Number of splices: Annotated (sjdb) |	210733542
                       Number of splices: GT/AG |	211475798
                       Number of splices: GC/AG |	1486549
                       Number of splices: AT/AC |	182697
               Number of splices: Non-canonical |	414943
                      Mismatch rate per base, % |	0.31%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10673393
             % of reads mapped to multiple loci |	4.19%
        Number of reads mapped to too many loci |	291108
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	513083
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	1722331
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	228942
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3064650
                            % of chimeric reads |	1.20%