Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c3fb44d5f6349e004d1ca5a6cbf6b1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c5643fa7f81cd0ecf8198fa965c624/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c3fb44d5f6349e004d1ca5a6cbf6b1/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293753001
unpaired = 4604699
MERGED PAIRED END READS = 293753001
MATES PROCESSED = 592110701
TOTAL READS     = 298357700
DISTINCT READS  = 1.61862e+08
DISTINCT COUNTS = 945
MAX COUNT       = 774993
COUNTS OF 1     = 1.02084e+08
MAX TERMS       = 100
OBSERVED COUNTS (774994)
1	102084060
2	34155017
3	12827796
4	5439782
5	2617373
6	1416144
7	845555
8	546760
9	375656
10	271503
11	202912
12	156159
13	123216
14	99113
15	80939
16	67350
17	56349
18	47829
19	40776
20	35528
21	30764
22	27083
23	23839
24	21033
25	18652
26	16898
27	14943
28	13679
29	12427
30	11304
31	10428
32	9426
33	8716
34	7976
35	7186
36	6767
37	6314
38	5915
39	5427
40	4990
41	4757
42	4421
43	4130
44	3850
45	3664
46	3405
47	3202
48	3076
49	2932
50	2694
51	2523
52	2426
53	2371
54	2311
55	2066
56	1973
57	1886
58	1706
59	1737
60	1613
61	1530
62	1497
63	1497
64	1355
65	1314
66	1284
67	1150
68	1149
69	1063
70	1037
71	990
72	964
73	913
74	891
75	830
76	853
77	839
78	761
79	737
80	755
81	712
82	645
83	657
84	612
85	593
86	568
87	614
88	543
89	522
90	480
91	521
92	504
93	432
94	496
95	454
96	433
97	380
98	399
99	383
100	373
101	376
102	351
103	359
104	351
105	357
106	342
107	272
108	302
109	314
110	296
111	292
112	263
113	274
114	252
115	276
116	256
117	259
118	237
119	210
120	220
121	235
122	222
123	214
124	186
125	188
126	192
127	193
128	200
129	177
130	173
131	186
132	170
133	194
134	182
135	167
136	144
137	147
138	171
139	138
140	163
141	152
142	137
143	129
144	150
145	136
146	131
147	128
148	121
149	107
150	98
151	120
152	103
153	96
154	106
155	98
156	107
157	100
158	99
159	104
160	82
161	96
162	98
163	82
164	86
165	108
166	74
167	88
168	103
169	86
170	77
171	68
172	73
173	85
174	82
175	69
176	76
177	72
178	76
179	74
180	73
181	71
182	70
183	80
184	69
185	64
186	59
187	59
188	64
189	72
190	57
191	61
192	54
193	61
194	51
195	51
196	54
197	57
198	57
199	57
200	32
201	33
202	38
203	45
204	48
205	39
206	44
207	61
208	43
209	40
210	45
211	35
212	38
213	54
214	47
215	46
216	44
217	50
218	34
219	46
220	47
221	38
222	38
223	32
224	31
225	36
226	23
227	34
228	39
229	36
230	35
231	41
232	35
233	26
234	35
235	34
236	33
237	35
238	36
239	27
240	29
241	39
242	33
243	28
244	25
245	28
246	31
247	25
248	25
249	25
250	30
251	32
252	24
253	26
254	22
255	23
256	17
257	19
258	29
259	23
260	16
261	21
262	21
263	21
264	25
265	25
266	13
267	23
268	18
269	23
270	23
271	23
272	26
273	20
274	24
275	19
276	18
277	22
278	20
279	20
280	13
281	18
282	17
283	15
284	17
285	22
286	25
287	15
288	20
289	18
290	11
291	15
292	15
293	13
294	16
295	23
296	12
297	21
298	17
299	21
300	18
301	19
302	14
303	11
304	13
305	17
306	11
307	9
308	9
309	17
310	11
311	16
312	15
313	17
314	11
315	19
316	18
317	15
318	14
319	13
320	14
321	18
322	13
323	9
324	18
325	20
326	6
327	10
328	14
329	9
330	14
331	6
332	10
333	17
334	8
335	13
336	9
337	5
338	12
339	8
340	11
341	13
342	13
343	13
344	9
345	10
346	6
347	8
348	11
349	11
350	14
351	9
352	15
353	7
354	8
355	15
356	13
357	13
358	7
359	5
360	7
361	5
362	10
363	10
364	9
365	10
366	7
367	8
368	11
369	9
370	10
371	7
372	5
373	9
374	5
375	8
376	8
377	8
378	1
379	9
380	4
381	10
382	7
383	12
384	9
385	2
386	8
387	6
388	7
389	4
390	8
391	6
392	3
393	3
394	9
395	5
396	5
397	8
398	12
399	6
400	9
401	4
402	7
403	7
404	3
405	6
406	3
407	7
408	7
409	8
410	4
411	6
412	6
413	8
414	8
415	10
416	5
417	7
418	4
419	5
420	3
421	6
422	6
423	7
424	7
425	5
426	3
427	4
428	10
429	4
430	8
431	5
432	11
433	7
434	10
435	5
436	6
437	3
438	1
439	6
440	7
441	3
442	8
443	4
444	8
445	1
446	3
447	5
448	2
449	5
450	3
451	4
452	2
453	5
454	2
455	4
456	7
457	3
458	5
459	2
460	8
461	4
462	3
463	6
464	4
465	5
466	8
467	5
468	1
469	3
470	4
471	5
472	5
473	6
474	3
475	1
476	7
477	3
478	3
479	9
480	5
481	5
482	3
483	3
484	4
485	3
486	7
487	6
488	3
490	3
491	1
492	3
493	5
494	1
495	4
496	4
497	8
498	3
499	2
500	4
501	1
502	7
503	4
504	1
505	2
506	4
507	1
509	3
510	3
511	4
512	3
513	1
514	3
515	2
516	1
517	1
518	1
519	1
520	1
521	5
522	5
523	1
524	3
525	2
526	2
527	2
528	1
529	3
530	1
531	3
532	4
533	1
534	4
535	2
536	6
538	2
539	1
540	2
541	2
542	1
543	3
544	2
545	2
546	1
547	6
548	3
549	4
550	2
551	1
553	1
554	2
556	3
557	3
558	2
559	2
561	1
562	1
563	2
564	3
565	2
566	1
567	3
568	2
569	3
570	3
571	1
572	1
573	2
574	2
575	2
576	2
577	4
578	1
579	3
580	4
581	2
582	1
583	1
585	1
586	2
587	1
588	1
589	1
590	1
591	2
592	1
593	4
595	2
598	1
599	4
600	2
601	2
602	2
603	1
604	2
605	1
606	1
607	2
608	2
609	2
610	1
611	1
614	2
615	2
616	2
617	2
618	1
619	3
620	2
621	1
622	2
623	1
627	3
628	1
629	1
630	4
632	2
633	1
634	1
635	2
637	3
639	1
640	1
642	3
643	3
644	2
645	1
649	1
650	1
651	4
652	1
653	1
654	2
655	2
656	1
657	2
658	2
659	2
661	1
664	1
666	1
667	1
668	1
669	3
670	2
673	1
674	1
675	1
676	2
677	1
678	4
679	1
680	3
681	3
682	1
683	1
685	1
686	1
687	3
688	1
689	5
690	3
692	2
694	1
695	3
696	2
698	1
699	2
700	2
701	1
703	2
704	3
706	1
707	1
709	1
711	1
712	2
713	2
714	1
716	2
717	1
719	1
721	1
722	1
723	1
724	1
725	1
727	2
728	2
731	2
732	1
734	1
736	1
737	2
738	2
739	1
740	1
743	1
744	2
746	3
748	1
750	2
751	1
753	2
755	2
757	2
758	1
759	1
760	3
763	1
766	1
770	1
773	2
776	1
778	1
780	1
781	2
783	2
784	1
785	1
786	2
787	4
788	1
789	2
790	1
793	1
795	1
797	1
799	1
801	1
802	3
803	1
804	1
805	3
806	1
807	1
810	2
811	1
812	3
816	1
817	2
818	2
820	1
821	1
822	1
824	2
825	1
826	1
829	2
830	1
832	1
833	1
834	1
835	1
837	1
838	1
840	1
844	1
846	3
848	1
849	1
850	1
851	1
853	1
856	1
858	2
859	1
862	2
864	1
866	3
868	2
870	2
871	1
873	2
875	1
879	1
880	2
883	1
885	1
886	1
890	2
892	1
894	1
896	1
899	3
905	1
914	1
917	1
923	1
926	1
930	2
935	1
936	1
939	1
940	1
943	3
947	3
948	2
951	2
953	1
955	2
957	1
961	1
963	1
966	2
967	1
971	2
972	2
975	1
977	1
987	1
992	1
996	1
998	1
999	1
1001	1
1003	1
1007	1
1013	1
1022	1
1024	1
1028	1
1029	1
1030	1
1033	2
1034	1
1040	1
1047	1
1051	1
1060	1
1061	3
1062	2
1063	1
1067	1
1072	2
1075	1
1078	1
1082	2
1084	1
1085	1
1086	1
1091	1
1092	1
1093	1
1102	2
1105	1
1108	2
1110	1
1111	1
1114	1
1115	1
1116	2
1120	1
1127	1
1129	1
1135	1
1145	1
1148	1
1158	1
1162	1
1179	1
1183	1
1203	1
1211	1
1219	1
1220	1
1224	1
1245	1
1260	1
1262	1
1269	1
1270	1
1271	1
1273	1
1285	1
1286	1
1297	1
1309	1
1340	1
1354	1
1358	1
1369	1
1379	1
1388	1
1424	1
1425	1
1437	1
1453	1
1464	1
1473	1
1481	1
1494	1
1530	1
1547	1
1554	1
1567	1
1574	1
1592	1
1595	1
1598	1
1599	1
1604	1
1606	1
1619	1
1655	1
1681	1
1711	1
1723	1
1734	1
1743	1
1753	1
1761	1
1772	1
1788	1
1793	1
1867	1
1882	1
1886	1
1887	1
1935	1
1957	1
2000	1
2120	1
2129	1
2188	1
2245	1
2261	1
2275	1
2384	1
2517	1
2628	1
2802	1
3021	1
3079	1
3114	1
3142	1
3453	1
3589	1
4217	1
4287	1
4341	1
8921	1
11514	1
14421	1
51477	1
774993	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._......_.._..........................._...._............_...._........
....................._............_..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]