File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/5b340503eb663db25ca7328a1be95f/.command.log
Size
5.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-67e6e5-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/5b340503eb663db25ca7328a1be95f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/5b340503eb663db25ca7328a1be95f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/6086b226ceb96745be4f9e1b5b3d7e/aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/923a4d40afc6e732a499d76b7902be/aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
YY1--IGH@-ext
starfusion
NF1--RAB11FIP4
starfusion
arriba
TXNL1--AC022031.2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AL669831.1--SEPTIN14
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
PRPF18--CTIF
starfusion
arriba
TLK2--AC240565.1
starfusion
AC026150.1--GOLGA6L10
starfusion
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
PCDHA5--PCDHAC1
arriba
PCDHA5--PCDHAC2
arriba
PCDHA5--PCDHA13
arriba
GABPB1--SLC27A2
arriba
TIMM23--PARGP1
arriba
NELL2--GPHN
arriba
DBX2--GPHN
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing YY1--IGH@-ext:   0%|          | 0/20 [00:00<?, ?it/s]
Processing YY1--IGH@-ext:   5%|▌         | 1/20 [00:00<00:02,  9.23it/s]
Processing NF1--RAB11FIP4:   5%|▌         | 1/20 [00:00<00:02,  9.23it/s]
Processing NF1--RAB11FIP4:  10%|█         | 2/20 [00:00<00:01,  9.47it/s]
Processing TXNL1--AC022031.2:  10%|█         | 2/20 [00:00<00:01,  9.47it/s]
Processing TXNL1--AC022031.2:  15%|█▌        | 3/20 [00:00<00:01,  9.55it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 3/20 [00:00<00:01,  9.55it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 4/20 [00:00<00:01,  9.59it/s]
Processing AL669831.1--SEPTIN14:  20%|██        | 4/20 [00:00<00:01,  9.59it/s]
Processing AL669831.1--SEPTIN14:  25%|██▌       | 5/20 [00:00<00:01,  9.61it/s]
Processing UBE2Q2P1--GOLGA6L10:  25%|██▌       | 5/20 [00:00<00:01,  9.61it/s] 
Processing UBE2Q2P1--GOLGA6L10:  30%|███       | 6/20 [00:00<00:01,  9.62it/s]
Processing PRPF18--CTIF:  30%|███       | 6/20 [00:00<00:01,  9.62it/s]       
Processing PRPF18--CTIF:  35%|███▌      | 7/20 [00:00<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  35%|███▌      | 7/20 [00:00<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  40%|████      | 8/20 [00:00<00:01,  9.64it/s]
Processing AC026150.1--GOLGA6L10:  40%|████      | 8/20 [00:00<00:01,  9.64it/s]
Processing AC026150.1--GOLGA6L10:  45%|████▌     | 9/20 [00:00<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  45%|████▌     | 9/20 [00:00<00:01,  9.64it/s]        
Processing TVP23C--CDRT4:  50%|█████     | 10/20 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  50%|█████     | 10/20 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  55%|█████▌    | 11/20 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  55%|█████▌    | 11/20 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  60%|██████    | 12/20 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  60%|██████    | 12/20 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  65%|██████▌   | 13/20 [00:01<00:00,  9.65it/s]
Processing PCDHA5--PCDHAC1:  65%|██████▌   | 13/20 [00:01<00:00,  9.65it/s]
Processing PCDHA5--PCDHAC1:  70%|███████   | 14/20 [00:01<00:00,  9.64it/s]
Processing PCDHA5--PCDHAC2:  70%|███████   | 14/20 [00:01<00:00,  9.64it/s]
Processing PCDHA5--PCDHAC2:  75%|███████▌  | 15/20 [00:01<00:00,  9.64it/s]
Processing PCDHA5--PCDHA13:  75%|███████▌  | 15/20 [00:01<00:00,  9.64it/s]
Processing PCDHA5--PCDHA13:  80%|████████  | 16/20 [00:01<00:00,  9.64it/s]
Processing GABPB1--SLC27A2:  80%|████████  | 16/20 [00:01<00:00,  9.64it/s]
Processing GABPB1--SLC27A2:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s]
Processing TIMM23--PARGP1:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s] 
Processing TIMM23--PARGP1:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]
Processing NELL2--GPHN:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]   
Processing NELL2--GPHN:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s]
Processing DBX2--GPHN:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s] 
Processing DBX2--GPHN: 100%|██████████| 20/20 [00:02<00:00,  9.64it/s]
Processing DBX2--GPHN: 100%|██████████| 20/20 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory