Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9ff7d993bff5316a0d1fde84300ac1/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/2bef0ba7c48b9944cd13632d298bc2/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/2bef0ba7c48b9944cd13632d298bc2/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records paired = 241336639 unpaired = 3530335 MERGED PAIRED END READS = 241336639 MATES PROCESSED = 486203613 TOTAL READS = 244866974 DISTINCT READS = 9.45259e+07 DISTINCT COUNTS = 797 MAX COUNT = 525023 COUNTS OF 1 = 4.13535e+07 MAX TERMS = 100 OBSERVED COUNTS (525024) 1 41353542 2 22026727 3 12423274 4 7073701 5 4091451 6 2430743 7 1497428 8 957359 9 637478 10 441542 11 314538 12 232602 13 174258 14 134428 15 105910 16 84528 17 68948 18 56452 19 47283 20 39389 21 33632 22 28645 23 24931 24 21744 25 19024 26 16730 27 14704 28 13183 29 11799 30 10457 31 9459 32 8659 33 7679 34 7064 35 6331 36 5871 37 5351 38 4929 39 4523 40 4152 41 3902 42 3573 43 3308 44 3111 45 2826 46 2605 47 2541 48 2380 49 2218 50 2096 51 1994 52 1818 53 1735 54 1598 55 1540 56 1409 57 1339 58 1248 59 1219 60 1175 61 1082 62 1037 63 993 64 924 65 868 66 847 67 802 68 758 69 749 70 692 71 704 72 667 73 608 74 552 75 566 76 516 77 585 78 527 79 495 80 492 81 450 82 430 83 422 84 398 85 393 86 387 87 320 88 343 89 364 90 303 91 309 92 293 93 279 94 284 95 242 96 236 97 244 98 214 99 226 100 255 101 230 102 217 103 202 104 210 105 190 106 177 107 165 108 194 109 170 110 167 111 159 112 160 113 151 114 146 115 159 116 157 117 155 118 160 119 128 120 138 121 131 122 122 123 110 124 124 125 109 126 103 127 106 128 120 129 102 130 105 131 97 132 82 133 85 134 86 135 93 136 91 137 80 138 80 139 86 140 86 141 79 142 63 143 62 144 69 145 77 146 69 147 73 148 64 149 61 150 59 151 66 152 72 153 59 154 63 155 63 156 63 157 59 158 54 159 56 160 50 161 68 162 68 163 56 164 47 165 65 166 52 167 63 168 44 169 51 170 33 171 48 172 53 173 38 174 43 175 35 176 48 177 42 178 44 179 46 180 39 181 53 182 28 183 39 184 36 185 45 186 31 187 32 188 34 189 36 190 35 191 39 192 31 193 27 194 31 195 28 196 38 197 36 198 21 199 22 200 36 201 15 202 24 203 19 204 31 205 25 206 16 207 22 208 18 209 23 210 31 211 30 212 25 213 24 214 31 215 18 216 19 217 21 218 19 219 13 220 17 221 20 222 21 223 23 224 19 225 10 226 15 227 18 228 16 229 18 230 20 231 23 232 16 233 19 234 18 235 17 236 17 237 15 238 13 239 18 240 20 241 19 242 12 243 22 244 21 245 12 246 15 247 11 248 16 249 13 250 22 251 18 252 12 253 14 254 18 255 15 256 15 257 17 258 12 259 17 260 16 261 14 262 7 263 7 264 14 265 4 266 8 267 17 268 12 269 14 270 9 271 6 272 8 273 12 274 11 275 13 276 11 277 12 278 13 279 9 280 5 281 18 282 14 283 12 284 8 285 10 286 4 287 8 288 9 289 4 290 15 291 7 292 10 293 10 294 10 295 8 296 6 297 13 298 4 299 9 300 9 301 3 302 4 303 2 304 8 305 6 306 4 307 10 308 8 309 8 310 6 311 7 312 7 313 5 314 8 315 3 316 5 317 8 318 6 319 3 320 6 321 4 322 4 323 11 324 7 325 8 326 6 327 3 328 7 329 2 330 4 331 4 332 6 333 1 334 7 335 9 336 5 337 6 338 9 339 8 340 6 341 7 342 7 343 4 344 10 345 4 346 6 347 4 348 4 349 1 350 3 351 6 352 9 353 7 354 6 355 4 356 4 357 5 358 8 359 3 360 7 361 2 362 3 363 2 364 5 365 2 366 1 367 3 368 1 369 5 370 2 371 7 372 5 373 2 374 2 375 2 376 5 377 2 378 2 379 3 380 3 381 3 382 5 383 3 384 5 385 3 386 1 387 6 388 7 389 3 390 2 391 4 392 6 393 3 394 2 395 3 396 2 397 2 398 2 400 1 401 3 402 5 403 5 404 4 405 1 406 5 407 4 408 4 409 3 410 2 412 2 413 7 414 6 415 2 416 2 417 5 418 2 419 2 420 3 422 4 423 1 424 5 426 2 427 4 428 5 429 3 430 4 431 3 432 3 433 4 434 3 435 4 436 3 437 3 438 3 439 2 440 1 441 2 442 1 443 1 444 4 446 4 447 2 448 1 449 2 450 4 451 2 452 3 453 1 454 2 455 3 456 3 458 1 459 4 460 4 462 2 463 2 466 5 467 4 468 2 469 4 470 4 473 4 475 1 476 2 477 2 478 3 479 3 480 1 481 1 483 3 484 1 485 2 486 3 487 1 489 1 490 2 491 2 492 2 493 4 494 1 495 1 497 1 498 1 499 1 500 1 502 3 503 1 504 1 505 3 506 2 507 1 508 1 509 1 510 4 511 2 512 3 513 2 516 1 517 3 518 1 519 2 520 1 521 3 523 2 524 1 525 2 526 1 529 4 531 3 532 3 533 2 534 1 535 1 536 1 537 1 538 2 539 3 541 2 542 2 543 3 545 2 546 2 547 1 548 2 549 1 550 1 551 1 553 1 554 1 555 2 556 1 558 1 559 1 560 1 561 2 564 1 566 1 567 1 568 1 569 1 574 2 575 1 576 1 577 1 578 3 579 1 580 1 582 1 584 1 587 1 588 1 589 1 590 1 591 2 593 3 594 2 595 2 596 1 600 1 604 1 605 1 609 2 611 1 613 2 617 1 618 1 620 2 621 2 622 1 626 1 627 4 628 1 629 2 633 3 635 1 636 1 639 1 640 1 641 2 642 2 643 1 644 2 648 1 649 1 651 3 654 2 655 1 656 2 657 1 659 1 660 1 662 1 663 1 665 1 668 1 669 1 670 3 672 3 679 1 683 1 685 1 687 1 690 1 691 1 692 1 693 1 697 1 698 1 700 1 701 2 704 2 709 1 711 1 713 2 715 1 720 2 725 1 729 1 733 1 738 2 739 1 742 1 743 1 745 2 747 2 749 1 750 1 751 2 752 1 754 2 755 1 758 3 761 1 765 1 766 1 767 1 769 2 774 1 776 2 779 1 782 1 784 1 787 1 791 1 794 1 796 1 799 1 801 1 806 1 809 1 814 1 815 1 816 2 817 1 818 1 819 1 820 1 822 1 823 2 825 1 826 1 829 1 830 1 831 1 833 1 835 2 836 1 841 3 842 1 845 1 848 1 853 1 859 1 863 2 880 1 885 1 889 1 892 1 899 2 903 1 904 1 909 1 914 1 915 1 919 1 921 1 925 1 926 1 929 1 933 1 937 1 940 1 944 1 945 1 951 1 953 1 956 1 961 2 962 1 966 1 968 1 970 1 971 1 978 1 983 1 985 1 986 1 989 1 993 1 996 3 997 1 1005 1 1006 1 1011 1 1013 1 1014 1 1015 1 1023 1 1034 1 1040 1 1062 1 1086 1 1105 1 1132 1 1141 1 1155 1 1156 1 1158 1 1167 2 1193 1 1197 1 1212 1 1231 1 1239 1 1242 1 1243 1 1250 1 1272 1 1279 1 1284 1 1290 1 1298 1 1299 1 1300 1 1307 1 1316 1 1342 1 1356 2 1365 1 1375 1 1386 1 1388 1 1398 1 1411 1 1460 1 1491 1 1494 1 1528 1 1529 1 1533 1 1554 1 1575 2 1582 1 1587 1 1594 1 1642 1 1661 1 1678 1 1699 1 1725 1 1767 1 1816 1 1957 1 1970 1 1991 1 2069 1 2087 1 2120 1 2177 1 2189 1 2298 1 2319 1 2441 1 2525 1 2550 1 2676 1 2849 1 2875 1 3689 1 3956 1 4011 1 4392 1 6352 1 6383 1 7263 1 24391 1 525023 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ....................................._.................................. ........._.................... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]