Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/4421cb359ff1d1c55fa27b91711bdd/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/9cc6c72d53e36f9858b81c2d3857ec/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/9cc6c72d53e36f9858b81c2d3857ec/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/98e082f27cd2c645140863f7479a24/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1274d4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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