File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/f64d63d91485d8fdf6368d29ae0541/.command.log
Size
726 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (aih-tih-sc-28eb14-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/db18243d2a270bf7b654c858a7a56a/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/f64d63d91485d8fdf6368d29ae0541/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/f64d63d91485d8fdf6368d29ae0541/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  aih-tih-sc-28eb14-R1_A23YTGFLT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: aih-tih-sc-28eb14-R1_A23YTGFLT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated